Ggra9194.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9194.t1
Unique NameGgra9194.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length423
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:355558..356826 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707907.1
PFAMsRCC1
Max annot lvl2759|Eukaryota
Evalue9.68e-49
EggNOG OGsCOG5184@1|root,KOG1426@2759|Eukaryota
Descriptionguanyl-nucleotide exchange factor activity
COG categoryDZ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9194Ggra9194Gracilaria gracilis GNS1m malegenetig00000075_pilon 355558..356826 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9194.t1.stop1Ggra9194.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 355558..355560 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9194.t1.CDS1Ggra9194.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 355558..356826 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9194.t1.exon1Ggra9194.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 355558..356826 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9194.t1.start1Ggra9194.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 356824..356826 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9194.t1Ggra9194.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 355558..356826 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9194.t1 ID=Ggra9194.t1|Name=Ggra9194.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=423bp
MHRGLKTLLCLGFASKSFVNLVESDNQSDYGSWMNWIFNEKEKDLEPDVG
NTRMKVLPEMPGRVLVWGGRYGKVPRSLDGLKPNMTKVAVGNGFGGAISS
DNKVFGFYKGNDSDVVQEIQVNGRPMHVEVMESTREIVLLDSKGRVHSST
CEKGGGFAPAKTLEGALKRMNVKNLECGRQHCAAISDKGRVITWGITNTS
GQLGTLESTEEENDNPQVPRLVKFPGDVPVRDVACGDRHTVFLDRRGNFY
SVGCDRWAQLGVSAEPWLADHEGFAPAIQKAGLLQGLAGAEVACGGQHSV
MLVKDGTVFSFGFNQWGQLGHHNYSTFGPPSPIAQYHIRAISVAAGENHT
CLITDHGDLMCIGSNEHGQLGNGTLQSSMKWKKVKTQKKVIKPLYLYSSG
CTTAVVVEEDEYSGRKPVEVAM*
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spliced messenger RNA

>Ggra9194.t1 ID=Ggra9194.t1|Name=Ggra9194.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1269bp|location=Sequence derived from alignment at tig00000075_pilon:355558..356826- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACAGAGGGCTTAAAACACTGTTATGTCTCGGATTCGCATCAAAGTC
TTTTGTCAATCTCGTTGAAAGCGACAATCAGAGCGATTACGGATCATGGA
TGAACTGGATTTTCAATGAGAAGGAAAAAGATCTTGAACCAGATGTAGGG
AATACCAGGATGAAAGTGCTTCCAGAAATGCCAGGAAGGGTATTGGTTTG
GGGTGGACGCTACGGGAAAGTACCTCGCAGTCTAGATGGACTCAAGCCTA
ACATGACAAAAGTAGCAGTAGGAAATGGTTTCGGTGGGGCTATTTCAAGT
GATAACAAAGTGTTTGGGTTTTACAAAGGTAATGATTCGGATGTTGTCCA
GGAAATTCAGGTAAATGGAAGACCGATGCACGTCGAAGTGATGGAATCTA
CTCGCGAAATAGTGCTGTTAGATTCCAAGGGTCGTGTTCATTCTTCAACA
TGTGAAAAGGGCGGCGGTTTCGCACCTGCAAAAACGTTGGAAGGAGCTTT
GAAGCGCATGAACGTTAAGAACCTCGAATGTGGAAGGCAGCATTGTGCAG
CGATTTCTGATAAAGGACGGGTCATAACTTGGGGCATTACTAATACATCC
GGGCAGTTGGGGACTCTGGAATCAACTGAGGAAGAGAACGACAACCCTCA
AGTACCTCGTCTAGTGAAGTTTCCTGGAGACGTCCCCGTCCGTGACGTTG
CTTGTGGTGATAGGCACACAGTGTTTCTGGATAGGAGAGGTAACTTTTAC
AGCGTAGGATGTGATCGATGGGCACAGCTAGGAGTATCTGCAGAACCATG
GTTAGCGGATCACGAAGGCTTTGCTCCTGCAATTCAGAAGGCAGGTCTTT
TGCAAGGGCTCGCAGGTGCAGAAGTTGCTTGTGGGGGTCAACACAGTGTC
ATGCTCGTCAAAGATGGGACAGTGTTCTCGTTTGGGTTCAATCAGTGGGG
TCAGTTGGGTCATCACAATTACTCTACGTTTGGACCCCCCTCTCCAATTG
CACAGTATCATATTAGAGCGATATCTGTCGCTGCCGGGGAAAACCATACC
TGCCTCATTACTGACCATGGAGATCTTATGTGCATTGGAAGCAATGAGCA
CGGACAACTTGGAAATGGAACCTTGCAGTCGTCAATGAAATGGAAAAAGG
TCAAGACTCAGAAGAAGGTAATAAAGCCGTTATATCTATATTCTTCCGGA
TGTACGACAGCCGTTGTTGTCGAAGAGGATGAGTACAGCGGTCGGAAACC
GGTTGAAGTGGCAATGTAA
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protein sequence of Ggra9194.t1

>Ggra9194.t1 ID=Ggra9194.t1|Name=Ggra9194.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=423bp
MHRGLKTLLCLGFASKSFVNLVESDNQSDYGSWMNWIFNEKEKDLEPDVG
NTRMKVLPEMPGRVLVWGGRYGKVPRSLDGLKPNMTKVAVGNGFGGAISS
DNKVFGFYKGNDSDVVQEIQVNGRPMHVEVMESTREIVLLDSKGRVHSST
CEKGGGFAPAKTLEGALKRMNVKNLECGRQHCAAISDKGRVITWGITNTS
GQLGTLESTEEENDNPQVPRLVKFPGDVPVRDVACGDRHTVFLDRRGNFY
SVGCDRWAQLGVSAEPWLADHEGFAPAIQKAGLLQGLAGAEVACGGQHSV
MLVKDGTVFSFGFNQWGQLGHHNYSTFGPPSPIAQYHIRAISVAAGENHT
CLITDHGDLMCIGSNEHGQLGNGTLQSSMKWKKVKTQKKVIKPLYLYSSG
CTTAVVVEEDEYSGRKPVEVAM*
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mRNA from alignment at tig00000075_pilon:355558..356826-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9194.t1 ID=Ggra9194.t1|Name=Ggra9194.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1269bp|location=Sequence derived from alignment at tig00000075_pilon:355558..356826- (Gracilaria gracilis GNS1m male)
ATGCACAGAGGGCTTAAAACACTGTTATGTCTCGGATTCGCATCAAAGTC
TTTTGTCAATCTCGTTGAAAGCGACAATCAGAGCGATTACGGATCATGGA
TGAACTGGATTTTCAATGAGAAGGAAAAAGATCTTGAACCAGATGTAGGG
AATACCAGGATGAAAGTGCTTCCAGAAATGCCAGGAAGGGTATTGGTTTG
GGGTGGACGCTACGGGAAAGTACCTCGCAGTCTAGATGGACTCAAGCCTA
ACATGACAAAAGTAGCAGTAGGAAATGGTTTCGGTGGGGCTATTTCAAGT
GATAACAAAGTGTTTGGGTTTTACAAAGGTAATGATTCGGATGTTGTCCA
GGAAATTCAGGTAAATGGAAGACCGATGCACGTCGAAGTGATGGAATCTA
CTCGCGAAATAGTGCTGTTAGATTCCAAGGGTCGTGTTCATTCTTCAACA
TGTGAAAAGGGCGGCGGTTTCGCACCTGCAAAAACGTTGGAAGGAGCTTT
GAAGCGCATGAACGTTAAGAACCTCGAATGTGGAAGGCAGCATTGTGCAG
CGATTTCTGATAAAGGACGGGTCATAACTTGGGGCATTACTAATACATCC
GGGCAGTTGGGGACTCTGGAATCAACTGAGGAAGAGAACGACAACCCTCA
AGTACCTCGTCTAGTGAAGTTTCCTGGAGACGTCCCCGTCCGTGACGTTG
CTTGTGGTGATAGGCACACAGTGTTTCTGGATAGGAGAGGTAACTTTTAC
AGCGTAGGATGTGATCGATGGGCACAGCTAGGAGTATCTGCAGAACCATG
GTTAGCGGATCACGAAGGCTTTGCTCCTGCAATTCAGAAGGCAGGTCTTT
TGCAAGGGCTCGCAGGTGCAGAAGTTGCTTGTGGGGGTCAACACAGTGTC
ATGCTCGTCAAAGATGGGACAGTGTTCTCGTTTGGGTTCAATCAGTGGGG
TCAGTTGGGTCATCACAATTACTCTACGTTTGGACCCCCCTCTCCAATTG
CACAGTATCATATTAGAGCGATATCTGTCGCTGCCGGGGAAAACCATACC
TGCCTCATTACTGACCATGGAGATCTTATGTGCATTGGAAGCAATGAGCA
CGGACAACTTGGAAATGGAACCTTGCAGTCGTCAATGAAATGGAAAAAGG
TCAAGACTCAGAAGAAGGTAATAAAGCCGTTATATCTATATTCTTCCGGA
TGTACGACAGCCGTTGTTGTCGAAGAGGATGAGTACAGCGGTCGGAAACC
GGTTGAAGTGGCAATGTAA
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Coding sequence (CDS) from alignment at tig00000075_pilon:355558..356826-

>Ggra9194.t1 ID=Ggra9194.t1|Name=Ggra9194.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1269bp|location=Sequence derived from alignment at tig00000075_pilon:355558..356826- (Gracilaria gracilis GNS1m male)
ATGCACAGAGGGCTTAAAACACTGTTATGTCTCGGATTCGCATCAAAGTC
TTTTGTCAATCTCGTTGAAAGCGACAATCAGAGCGATTACGGATCATGGA
TGAACTGGATTTTCAATGAGAAGGAAAAAGATCTTGAACCAGATGTAGGG
AATACCAGGATGAAAGTGCTTCCAGAAATGCCAGGAAGGGTATTGGTTTG
GGGTGGACGCTACGGGAAAGTACCTCGCAGTCTAGATGGACTCAAGCCTA
ACATGACAAAAGTAGCAGTAGGAAATGGTTTCGGTGGGGCTATTTCAAGT
GATAACAAAGTGTTTGGGTTTTACAAAGGTAATGATTCGGATGTTGTCCA
GGAAATTCAGGTAAATGGAAGACCGATGCACGTCGAAGTGATGGAATCTA
CTCGCGAAATAGTGCTGTTAGATTCCAAGGGTCGTGTTCATTCTTCAACA
TGTGAAAAGGGCGGCGGTTTCGCACCTGCAAAAACGTTGGAAGGAGCTTT
GAAGCGCATGAACGTTAAGAACCTCGAATGTGGAAGGCAGCATTGTGCAG
CGATTTCTGATAAAGGACGGGTCATAACTTGGGGCATTACTAATACATCC
GGGCAGTTGGGGACTCTGGAATCAACTGAGGAAGAGAACGACAACCCTCA
AGTACCTCGTCTAGTGAAGTTTCCTGGAGACGTCCCCGTCCGTGACGTTG
CTTGTGGTGATAGGCACACAGTGTTTCTGGATAGGAGAGGTAACTTTTAC
AGCGTAGGATGTGATCGATGGGCACAGCTAGGAGTATCTGCAGAACCATG
GTTAGCGGATCACGAAGGCTTTGCTCCTGCAATTCAGAAGGCAGGTCTTT
TGCAAGGGCTCGCAGGTGCAGAAGTTGCTTGTGGGGGTCAACACAGTGTC
ATGCTCGTCAAAGATGGGACAGTGTTCTCGTTTGGGTTCAATCAGTGGGG
TCAGTTGGGTCATCACAATTACTCTACGTTTGGACCCCCCTCTCCAATTG
CACAGTATCATATTAGAGCGATATCTGTCGCTGCCGGGGAAAACCATACC
TGCCTCATTACTGACCATGGAGATCTTATGTGCATTGGAAGCAATGAGCA
CGGACAACTTGGAAATGGAACCTTGCAGTCGTCAATGAAATGGAAAAAGG
TCAAGACTCAGAAGAAGGTAATAAAGCCGTTATATCTATATTCTTCCGGA
TGTACGACAGCCGTTGTTGTCGAAGAGGATGAGTACAGCGGTCGGAAACC
GGTTGAAGTGGCAATGTAA
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