Ggra9258.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9258.t1
Unique NameGgra9258.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length128
Homology
BLAST of Ggra9258.t1 vs. uniprot
Match: A0A2V3IE38 (Multiprotein-bridging factor 1b n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IE38_9FLOR)

HSP 1 Score: 217 bits (552), Expect = 6.540e-71
Identity = 112/127 (88.19%), Postives = 118/127 (92.91%), Query Frame = 0
Query:    1 MSQQDWEKVVIRPKASSSKKPEAGAGGAPTEKKFAAGSNARRGDSNMAKLDAETENLSHKRVGLTLGKAIQKARTTKKMTQADLAKIINEKPAVINQYENGKAIPNGQIIVKIERALGTKLPRPVKK 127
            MS QDW+KVVIRPKASSSKKPE GAGG PTEKKFAAGSNA+RGD+NMAKLDA+ ENLSHKRVGLTLGKAIQKAR  KKMTQADLAK INEKPAV+NQYENGKA+PNGQIIVKIERALGTKLPR  KK
Sbjct:    1 MSHQDWDKVVIRPKASSSKKPEPGAGGTPTEKKFAAGSNAKRGDANMAKLDADNENLSHKRVGLTLGKAIQKARAEKKMTQADLAKAINEKPAVVNQYENGKALPNGQIIVKIERALGTKLPRQPKK 127          
BLAST of Ggra9258.t1 vs. uniprot
Match: R7Q831 (Multiprotein bridging factor 1 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q831_CHOCR)

HSP 1 Score: 156 bits (395), Expect = 6.160e-47
Identity = 88/126 (69.84%), Postives = 104/126 (82.54%), Query Frame = 0
Query:    4 QDWEKVVIRPK-ASSSKKPEAGAGGAPTEKKFAAGSNARR-GDSNMAKLDAETENLSHKRVGLTLGKAIQKARTTKKMTQADLAKIINEKPAVINQYENGKAIPNGQIIVKIERALGTKLPRPVKK 127
            QDW +VV+R K  S S+K E+G G +  E+KF AGSN +  GDS+MAKLDAET+ L+HK+VGL LGKAIQ+AR+ K MTQA LA+ INEKPAV+N YENGKAIPNGQIIVK+ERALGTKLPRP KK
Sbjct:    6 QDWSRVVMRSKNPSGSRKLESGPGSS-AERKFTAGSNTKASGDSSMAKLDAETDVLAHKKVGLGLGKAIQQARSAKGMTQAKLAQAINEKPAVVNTYENGKAIPNGQIIVKMERALGTKLPRPSKK 130          
BLAST of Ggra9258.t1 vs. uniprot
Match: endothelial differentiation-related factor 1 homolog n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DC305 (endothelial differentiation-related factor 1 homolog n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DC305)

HSP 1 Score: 155 bits (393), Expect = 1.060e-46
Identity = 86/121 (71.07%), Postives = 97/121 (80.17%), Query Frame = 0
Query:    4 QDWEKVVIRPKASSS-KKPEAGAGGAPTEKKFAAGSNARRGDSNMAKLDAETENLSHKRVGLTLGKAIQKARTTKKMTQADLAKIINEKPAVINQYENGKAIPNGQIIVKIERALGTKLPR 123
            QDW++VVI+PKASS  KK EAGAGGA TEKK +  S        +AKLD ETE L+HK+VGL LGKAIQ+ART K MTQA LA+ INEKPAV+N+YENGKAIPNGQII KIERALG KLPR
Sbjct:    5 QDWDRVVIKPKASSGGKKAEAGAGGASTEKKSSTNSGKGVDGQALAKLDRETEELAHKKVGLGLGKAIQQARTAKGMTQAKLAQAINEKPAVVNEYENGKAIPNGQIISKIERALGCKLPR 125          
BLAST of Ggra9258.t1 vs. uniprot
Match: A0A1X6NKB2 (HTH cro/C1-type domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NKB2_PORUM)

HSP 1 Score: 135 bits (340), Expect = 1.300e-38
Identity = 78/122 (63.93%), Postives = 90/122 (73.77%), Query Frame = 0
Query:    4 QDWEKVVIRPKASSSK---KPEAGAGGAP-TEKKFAAGSNARRGDSNMAKLDAETENLSHKRVGLTLGKAIQKARTTKKMTQADLAKIINEKPAVINQYENGKAIPNGQIIVKIERALGTKL 121
            QDWE V IRPK  S K        AGGA  TEKK  AGSN+R GD N++KLDAET+ L+H  V ++L K+IQKAR  KK +QA LA+ INEKPAVINQYE GKA+PN QII K+ERALGTKL
Sbjct:    3 QDWEPVKIRPKTGSRKADVNAAVRAGGAVVTEKKHGAGSNSRTGDKNLSKLDAETDVLAHATVSMSLSKSIQKARVDKKWSQAQLAQAINEKPAVINQYEAGKALPNSQIISKMERALGTKL 124          
BLAST of Ggra9258.t1 vs. uniprot
Match: B9A9Z0 (Multiprotein bridging factor 1 n=1 Tax=Neopyropia yezoensis TaxID=2788 RepID=B9A9Z0_NEOYE)

HSP 1 Score: 133 bits (334), Expect = 1.060e-37
Identity = 75/122 (61.48%), Postives = 89/122 (72.95%), Query Frame = 0
Query:    4 QDWEKVVIRPKASSSKKPEAGA----GGAPTEKKFAAGSNARRGDSNMAKLDAETENLSHKRVGLTLGKAIQKARTTKKMTQADLAKIINEKPAVINQYENGKAIPNGQIIVKIERALGTKL 121
            QDW  V IRPK  S K   + A    G    EKK  AGSN+R GD+N++KLDAET+ L+H  V L+L K+IQKAR  KK +QA LA+ INEKPAVINQYE+GKA+PN QII KIERALGTK+
Sbjct:    3 QDWAPVRIRPKTGSKKADVSAAVRSGGTVVAEKKHGAGSNSRTGDTNLSKLDAETDVLAHATVSLSLSKSIQKARIDKKWSQAQLAQAINEKPAVINQYESGKALPNNQIISKIERALGTKV 124          
BLAST of Ggra9258.t1 vs. uniprot
Match: D8LR14 (Flagellar associated protein, transcriptional coactivator-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LR14_ECTSI)

HSP 1 Score: 119 bits (299), Expect = 3.020e-32
Identity = 74/134 (55.22%), Postives = 87/134 (64.93%), Query Frame = 0
Query:    4 QDWEKVVI---RPKASSSKKPEAGAGGA-----PTEKKFAAGSN--ARRGDSNMAKLDAETENLSHKRVGLTLGKAIQKARTTKKMTQADLAKIINEKPAVINQYENGKAIPNGQIIVKIERALGTKLPRPVKK 127
            QDW  V+I   RP A+  +K  A A  A      TE+KFAAG N  + RG  NM KLD ETE   H RV   L +AIQ+AR  KKMTQ  LA  INEKP V+ +YE+GKAIPN Q+I K+ERALG +LPRP KK
Sbjct:    3 QDWNTVMISKTRPTATRGQKNAATAAAARSGTLDTERKFAAGENKSSHRGHMNMKKLDDETEEFQHTRVDRGLAQAIQQARLGKKMTQKQLATQINEKPQVVGEYESGKAIPNPQLISKLERALGVRLPRPGKK 136          
BLAST of Ggra9258.t1 vs. uniprot
Match: A0A0A0KGV6 (HTH cro/C1-type domain-containing protein n=6 Tax=Cucurbitaceae TaxID=3650 RepID=A0A0A0KGV6_CUCSA)

HSP 1 Score: 117 bits (292), Expect = 3.800e-31
Identity = 75/130 (57.69%), Postives = 85/130 (65.38%), Query Frame = 0
Query:    4 QDWEKVVIRPKA--SSSKKPEAGAGGA-------PTEKKFAAGSNARRGDS---NMAKLDAETENLSHKRVGLTLGKAIQKARTTKKMTQADLAKIINEKPAVINQYENGKAIPNGQIIVKIERALGTKL 121
            QDWE VVIR KA  +++KK E     A        T KK AAGSN     S   N  KLD ETENLSH RV   L KAI  ART KK+TQ+ LA++INEKP VI +YE+GKAIPN QII K+ERALG KL
Sbjct:    9 QDWEPVVIRKKAPNAAAKKDEKAVNAARRAGAEIETIKKSAAGSNKSASSSTTLNTRKLDEETENLSHDRVPTELKKAIMHARTEKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQIITKLERALGAKL 138          
BLAST of Ggra9258.t1 vs. uniprot
Match: A0A5B8MLA0 (HTH cro/C1-type domain-containing protein n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MLA0_9CHLO)

HSP 1 Score: 117 bits (292), Expect = 3.800e-31
Identity = 67/132 (50.76%), Postives = 84/132 (63.64%), Query Frame = 0
Query:    4 QDWEKVVIRPKASSSKKPEAG--------AGGAPTEKKFAAGSNARRGDSNMAKLDAETENLSHKRVGLTLGKAIQKARTTKKMTQADLAKIINEKPAVINQYENGKAIPNGQIIVKIERALGTKLPRPVKK 127
            QDW++V+IR K  SS + +          +G   T  KF+ GSN + G +N  KLDA  E  +HK+V   L KAIQ+AR  KKMTQA LA  INE+P ++ +YENGKAIPN QI+ KIERALG KL    KK
Sbjct:    7 QDWDQVIIRKKKPSSSQTKDSKNVNNAFRSGNVDTLNKFSGGSNKKAGPANATKLDASDEAFAHKKVSTDLKKAIQQARMAKKMTQAQLATAINEQPKIVQEYENGKAIPNNQILGKIERALGVKLRGGNKK 138          
BLAST of Ggra9258.t1 vs. uniprot
Match: A0A5N6L1G6 (HTH cro/C1-type domain-containing protein n=2 Tax=rosids TaxID=71275 RepID=A0A5N6L1G6_9ROSI)

HSP 1 Score: 115 bits (288), Expect = 1.530e-30
Identity = 73/130 (56.15%), Postives = 86/130 (66.15%), Query Frame = 0
Query:    4 QDWEKVVIRPKA--SSSKKPEAGAGGA-------PTEKKFAAGSNARRGDS---NMAKLDAETENLSHKRVGLTLGKAIQKARTTKKMTQADLAKIINEKPAVINQYENGKAIPNGQIIVKIERALGTKL 121
            QDWE VVIR KA  +++KK E     A        T KK  AG+N     S   N  KLD ETENL+H+RV   L KAI +ART KK+TQA LA++INEKP VI +YE+GKAIPN QII K+ERALG KL
Sbjct:    9 QDWEPVVIRKKAPNAAAKKDEKAVNAARRSGAEIETIKKSTAGTNKAASSSTSLNTRKLDEETENLAHERVPTELKKAITQARTEKKLTQAQLAQLINEKPQVIQEYESGKAIPNQQIITKLERALGAKL 138          
BLAST of Ggra9258.t1 vs. uniprot
Match: A0A830HM77 (Multiprotein-bridging factor 1a n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HM77_9CHLO)

HSP 1 Score: 113 bits (282), Expect = 1.210e-29
Identity = 72/129 (55.81%), Postives = 85/129 (65.89%), Query Frame = 0
Query:    4 QDWEKVVIRPKA----SSSKKPEAGAG----GAPTE--KKFAAGSNARRGD-SNMAKLDAETENLSHKRVGLTLGKAIQKARTTKKMTQADLAKIINEKPAVINQYENGKAIPNGQIIVKIERALGTKL 121
            QDWE VVIR K     SS+K P++ A     GA  E  +KF AG+N R G  SN  KL+ +TENLSH+RV   L K IQ+AR  KKMTQA L   INE P  + +YENGKAIPN Q++ KIERALG KL
Sbjct:    8 QDWEPVVIRKKGPAPGSSAKDPKSLAAAIRSGAQVETMQKFGAGTNKRGGGPSNAQKLENDTENLSHERVSSELKKMIQQARLAKKMTQAQLGNAINEPPKTVQEYENGKAIPNNQVLGKIERALGVKL 136          
The following BLAST results are available for this feature:
BLAST of Ggra9258.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IE386.540e-7188.19Multiprotein-bridging factor 1b n=1 Tax=Gracilario... [more]
R7Q8316.160e-4769.84Multiprotein bridging factor 1 n=1 Tax=Chondrus cr... [more]
endothelial differentiation-related factor 1 homolog n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DC3051.060e-4671.07endothelial differentiation-related factor 1 homol... [more]
A0A1X6NKB21.300e-3863.93HTH cro/C1-type domain-containing protein n=1 Tax=... [more]
B9A9Z01.060e-3761.48Multiprotein bridging factor 1 n=1 Tax=Neopyropia ... [more]
D8LR143.020e-3255.22Flagellar associated protein, transcriptional coac... [more]
A0A0A0KGV63.800e-3157.69HTH cro/C1-type domain-containing protein n=6 Tax=... [more]
A0A5B8MLA03.800e-3150.76HTH cro/C1-type domain-containing protein n=1 Tax=... [more]
A0A5N6L1G61.530e-3056.15HTH cro/C1-type domain-containing protein n=2 Tax=... [more]
A0A830HM771.210e-2955.81Multiprotein-bridging factor 1a n=1 Tax=Pycnococcu... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001387Cro/C1-type helix-turn-helix domainSMARTSM00530mbf_short4coord: 69..124
e-value: 4.9E-12
score: 56.0
IPR001387Cro/C1-type helix-turn-helix domainPFAMPF01381HTH_3coord: 70..121
e-value: 1.4E-13
score: 50.7
IPR001387Cro/C1-type helix-turn-helix domainPROSITEPS50943HTH_CROC1coord: 70..124
score: 13.059753
IPR001387Cro/C1-type helix-turn-helix domainCDDcd00093HTH_XREcoord: 67..121
e-value: 1.26045E-12
score: 56.4074
IPR013729Multiprotein bridging factor 1, N-terminalPFAMPF08523MBF1coord: 4..62
e-value: 1.1E-8
score: 35.4
IPR010982Lambda repressor-like, DNA-binding domain superfamilyGENE3D1.10.260.40coord: 54..127
e-value: 6.1E-27
score: 94.9
IPR010982Lambda repressor-like, DNA-binding domain superfamilySUPERFAMILY47413lambda repressor-like DNA-binding domainscoord: 65..121
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..54
NoneNo IPR availablePANTHERPTHR10245ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1coord: 1..121

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:611518..612250 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9258.t1Ggra9258.t1Gracilaria gracilis GNS1m malemRNAtig00000075_pilon 611518..612250 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9258.t1 ID=Ggra9258.t1|Name=Ggra9258.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=128bp
MSQQDWEKVVIRPKASSSKKPEAGAGGAPTEKKFAAGSNARRGDSNMAKL
DAETENLSHKRVGLTLGKAIQKARTTKKMTQADLAKIINEKPAVINQYEN
GKAIPNGQIIVKIERALGTKLPRPVKK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001387Cro/C1-type_HTH
IPR013729MBF1_N
IPR010982Lambda_DNA-bd_dom_sf