Ggra9195.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9195.t1
Unique NameGgra9195.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length307
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:357483..358403 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5875.XP_763697.1
PFAMstRNA_m1G_MT
Max annot lvl422676|Aconoidasida
KEGG koko:K15445
Evalue6.44e-30
EggNOG OGsKOG2967@1|root,KOG2967@2759|Eukaryota,3YC28@5794|Apicomplexa,3KBPH@422676|Aconoidasida,3Z435@5863|Piroplasmida
EC2.1.1.221
DescriptiontRNA (Guanine-1)-methyltransferase
COG categoryS
BRITEko00000,ko01000,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9195Ggra9195Gracilaria gracilis GNS1m malegenetig00000075_pilon 357483..358403 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9195.t1.stop1Ggra9195.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 357483..357485 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9195.t1.CDS1Ggra9195.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 357483..358403 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9195.t1.exon1Ggra9195.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 357483..358403 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9195.t1.start1Ggra9195.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 358401..358403 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9195.t1Ggra9195.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 357483..358403 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9195.t1 ID=Ggra9195.t1|Name=Ggra9195.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=307bp
MGATFSQLFGRQEERTGLLNPTQETAPQPQQHEQLSKKARKKIARQQRLQ
ERKQAQKAERRELKVTERIRKRQEREEALKHLSAEQRDEMLRERVEHMRA
GRAAERAKKAHVRDILMNQSKYCVCIDLGWNAQMFEKERKSLARQLAYSY
STLRKCAEEGLTPLRLSIVGIDNDIKSILSFAAQGWESWPLQLCEESLEQ
VHDRRRLVYLTHDAEDVLETLDPSDIYVIGGLVDRNRLKGATRLKAESLS
IRSARLNLDANISIQHGTPVLTVNHCVEILLHVANGASWKDAYLRVLPER
KGIKSC*
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spliced messenger RNA

>Ggra9195.t1 ID=Ggra9195.t1|Name=Ggra9195.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=921bp|location=Sequence derived from alignment at tig00000075_pilon:357483..358403- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGCGACATTCAGTCAATTGTTTGGTCGCCAAGAAGAAAGAACCGG
GCTATTGAACCCTACCCAGGAAACTGCTCCGCAACCTCAACAGCATGAAC
AACTTTCCAAGAAGGCAAGAAAGAAAATTGCTCGCCAACAGCGCCTTCAA
GAACGCAAACAAGCTCAGAAGGCTGAAAGGCGGGAATTGAAGGTAACAGA
GAGAATACGGAAACGTCAGGAGAGAGAGGAGGCCTTGAAGCACCTTTCGG
CTGAGCAGCGAGATGAAATGCTTCGTGAGAGAGTTGAACATATGAGAGCT
GGACGAGCAGCTGAAAGAGCAAAGAAGGCCCATGTTCGAGATATTCTGAT
GAACCAGTCAAAGTATTGTGTCTGTATTGATCTAGGTTGGAACGCACAAA
TGTTTGAGAAAGAGCGAAAAAGTCTAGCCCGGCAGCTGGCGTATTCGTAC
AGTACGTTACGAAAGTGTGCTGAAGAAGGATTAACCCCTTTGCGCCTTTC
AATTGTCGGAATCGACAACGATATCAAGTCCATTCTTTCTTTCGCAGCGC
AAGGGTGGGAGTCTTGGCCCCTCCAGCTTTGTGAGGAAAGTTTGGAACAA
GTACATGACAGAAGAAGGCTCGTCTACCTTACCCACGACGCTGAAGATGT
TCTAGAAACACTGGACCCTTCTGATATATATGTCATTGGTGGCCTTGTGG
ATAGAAATCGATTGAAGGGAGCGACGCGGCTGAAAGCGGAGAGTTTATCG
ATTCGCTCGGCCAGATTGAACTTGGACGCGAACATATCTATCCAACACGG
AACACCTGTTCTGACAGTTAACCATTGTGTAGAGATCTTACTCCACGTTG
CCAATGGAGCCTCTTGGAAAGATGCATATCTGCGAGTGCTTCCTGAACGT
AAAGGAATAAAAAGTTGCTAA
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protein sequence of Ggra9195.t1

>Ggra9195.t1 ID=Ggra9195.t1|Name=Ggra9195.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=307bp
MGATFSQLFGRQEERTGLLNPTQETAPQPQQHEQLSKKARKKIARQQRLQ
ERKQAQKAERRELKVTERIRKRQEREEALKHLSAEQRDEMLRERVEHMRA
GRAAERAKKAHVRDILMNQSKYCVCIDLGWNAQMFEKERKSLARQLAYSY
STLRKCAEEGLTPLRLSIVGIDNDIKSILSFAAQGWESWPLQLCEESLEQ
VHDRRRLVYLTHDAEDVLETLDPSDIYVIGGLVDRNRLKGATRLKAESLS
IRSARLNLDANISIQHGTPVLTVNHCVEILLHVANGASWKDAYLRVLPER
KGIKSC*
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mRNA from alignment at tig00000075_pilon:357483..358403-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9195.t1 ID=Ggra9195.t1|Name=Ggra9195.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=921bp|location=Sequence derived from alignment at tig00000075_pilon:357483..358403- (Gracilaria gracilis GNS1m male)
ATGGGCGCGACATTCAGTCAATTGTTTGGTCGCCAAGAAGAAAGAACCGG
GCTATTGAACCCTACCCAGGAAACTGCTCCGCAACCTCAACAGCATGAAC
AACTTTCCAAGAAGGCAAGAAAGAAAATTGCTCGCCAACAGCGCCTTCAA
GAACGCAAACAAGCTCAGAAGGCTGAAAGGCGGGAATTGAAGGTAACAGA
GAGAATACGGAAACGTCAGGAGAGAGAGGAGGCCTTGAAGCACCTTTCGG
CTGAGCAGCGAGATGAAATGCTTCGTGAGAGAGTTGAACATATGAGAGCT
GGACGAGCAGCTGAAAGAGCAAAGAAGGCCCATGTTCGAGATATTCTGAT
GAACCAGTCAAAGTATTGTGTCTGTATTGATCTAGGTTGGAACGCACAAA
TGTTTGAGAAAGAGCGAAAAAGTCTAGCCCGGCAGCTGGCGTATTCGTAC
AGTACGTTACGAAAGTGTGCTGAAGAAGGATTAACCCCTTTGCGCCTTTC
AATTGTCGGAATCGACAACGATATCAAGTCCATTCTTTCTTTCGCAGCGC
AAGGGTGGGAGTCTTGGCCCCTCCAGCTTTGTGAGGAAAGTTTGGAACAA
GTACATGACAGAAGAAGGCTCGTCTACCTTACCCACGACGCTGAAGATGT
TCTAGAAACACTGGACCCTTCTGATATATATGTCATTGGTGGCCTTGTGG
ATAGAAATCGATTGAAGGGAGCGACGCGGCTGAAAGCGGAGAGTTTATCG
ATTCGCTCGGCCAGATTGAACTTGGACGCGAACATATCTATCCAACACGG
AACACCTGTTCTGACAGTTAACCATTGTGTAGAGATCTTACTCCACGTTG
CCAATGGAGCCTCTTGGAAAGATGCATATCTGCGAGTGCTTCCTGAACGT
AAAGGAATAAAAAGTTGCTAA
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Coding sequence (CDS) from alignment at tig00000075_pilon:357483..358403-

>Ggra9195.t1 ID=Ggra9195.t1|Name=Ggra9195.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=921bp|location=Sequence derived from alignment at tig00000075_pilon:357483..358403- (Gracilaria gracilis GNS1m male)
ATGGGCGCGACATTCAGTCAATTGTTTGGTCGCCAAGAAGAAAGAACCGG
GCTATTGAACCCTACCCAGGAAACTGCTCCGCAACCTCAACAGCATGAAC
AACTTTCCAAGAAGGCAAGAAAGAAAATTGCTCGCCAACAGCGCCTTCAA
GAACGCAAACAAGCTCAGAAGGCTGAAAGGCGGGAATTGAAGGTAACAGA
GAGAATACGGAAACGTCAGGAGAGAGAGGAGGCCTTGAAGCACCTTTCGG
CTGAGCAGCGAGATGAAATGCTTCGTGAGAGAGTTGAACATATGAGAGCT
GGACGAGCAGCTGAAAGAGCAAAGAAGGCCCATGTTCGAGATATTCTGAT
GAACCAGTCAAAGTATTGTGTCTGTATTGATCTAGGTTGGAACGCACAAA
TGTTTGAGAAAGAGCGAAAAAGTCTAGCCCGGCAGCTGGCGTATTCGTAC
AGTACGTTACGAAAGTGTGCTGAAGAAGGATTAACCCCTTTGCGCCTTTC
AATTGTCGGAATCGACAACGATATCAAGTCCATTCTTTCTTTCGCAGCGC
AAGGGTGGGAGTCTTGGCCCCTCCAGCTTTGTGAGGAAAGTTTGGAACAA
GTACATGACAGAAGAAGGCTCGTCTACCTTACCCACGACGCTGAAGATGT
TCTAGAAACACTGGACCCTTCTGATATATATGTCATTGGTGGCCTTGTGG
ATAGAAATCGATTGAAGGGAGCGACGCGGCTGAAAGCGGAGAGTTTATCG
ATTCGCTCGGCCAGATTGAACTTGGACGCGAACATATCTATCCAACACGG
AACACCTGTTCTGACAGTTAACCATTGTGTAGAGATCTTACTCCACGTTG
CCAATGGAGCCTCTTGGAAAGATGCATATCTGCGAGTGCTTCCTGAACGT
AAAGGAATAAAAAGTTGCTAA
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