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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 3656.XP_008438362.1 |
| Preferred name | UBP2 |
| PFAMs | UCH,zf-UBP |
| Max annot lvl | 35493|Streptophyta |
| KEGG ko | ko:K11844 |
| GOs | GO:0000502,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009507,GO:0009536,GO:0009987,GO:0019538,GO:0019941,GO:0030163,GO:0032991,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0051603,GO:0071704,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1905368,GO:1905369 |
| Evalue | 3.23e-27 |
| EggNOG OGs | COG5560@1|root,KOG1873@2759|Eukaryota,37MAY@33090|Viridiplantae,3G74P@35493|Streptophyta,4JGGT@91835|fabids |
| EC | 3.4.19.12 |
| Description | Ubiquitin carboxyl-terminal hydrolase |
| COG category | O |
| BRITE | ko00000,ko01000,ko01002,ko04121 |
Relationships
This mRNA is a part of the following gene feature(s):
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Ggra9162.t1.stop1 | Ggra9162.t1.stop1 | Gracilaria gracilis GNS1m male | stop_codon | tig00000075_pilon 269946..269948 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Ggra9162.t1.start1 | Ggra9162.t1.start1 | Gracilaria gracilis GNS1m male | start_codon | tig00000075_pilon 272472..272474 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Ggra9162.t1 ID=Ggra9162.t1|Name=Ggra9162.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=843bp MGRRVSQKAARRKGSKRQRAAEKRAERERNRLSARNATDPAAASHRLTLL REAVVRGDAPAPRGLTNLGNTCFFNAVMQNLARVATFREYFVGSAPCPGE GPFTAALRSFFVAMWDLSTTSVYNPSKLFTEVGKKNPNFRGRAQQDSHEL MRVLFDGVVEEEKQRLSKVHRGILPPVHESEVSDSSSDSGTLTSTTSLDE IADESPIVDDAVVFIGPQLPGESISDISKASSVTESVNTASASLDDAQSP ASESSSAEASEPEPIPAEKLLTIIERTFGGTLSSTIVCKECGSKSSVTEP FLDLQLPLVPKEEKSEEKAKEQTSDIDESEAPETVNVSDGKSLDAPKFEY SELEQSAVTTKTVAIPPPPPPLPPPPRTVRPSQGSQVCSDPMDELRKKVN PYEAEPVQENRLIVHPSVLNTENAVSSDTEAVIEDDDTDSYCLPSLFDDD FCDSNDSALEDVKGMTAFSTSEAARAQDENKALPERQPTTVQSTRRPSSF ISTFFGGFGGSSSAAPYGYKSIIGSLEEFTKIEVLEGENAYGCEECTRRE KLRVALQRKRIVTKPLVDKVRKVAQRIEALPLVDSSSEQGSDDLDVRSQE KRENVQCKITSVAFQSSVGASRESHTSEIVSSPVTSSESSSSVCSDEDGD LIVEEELETERGNAGVKVSPLTRAEEDKLLRGVKVDVPTVRTTAEKRFMI REAPDVLAIQLKRFMQTGFRGGLRKISGSVAFPAKLDITNFMDVDNEDRD DHEDNSQNVTKRKRKEKGCTEPARSEAYQYILTGVCVHGGSLSGGHYTAY VREGVESDSRGSWYFCNDSKISRATEKDVLNSEPYLLYYERV* back to topspliced messenger RNA >Ggra9162.t1 ID=Ggra9162.t1|Name=Ggra9162.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2529bp|location=Sequence derived from alignment at tig00000075_pilon:269946..272474- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.
ATGGGGCGCCGCGTCAGCCAAAAGGCCGCGCGCAGGAAAGGCTCCAAGCG CCAGCGCGCCGCCGAGAAGCGAGCCGAGCGCGAACGCAATCGCCTTTCTG CCCGCAACGCCACCGACCCCGCCGCTGCCAGCCATCGCCTTACACTTCTT AGGGAGGCCGTTGTTCGCGGCGATGCTCCCGCCCCCCGCGGCCTCACCAA TCTAGGTAACACTTGCTTCTTCAATGCTGTCATGCAGAACCTTGCCCGCG TGGCAACTTTCCGCGAATATTTCGTCGGAAGCGCGCCGTGCCCAGGTGAG GGCCCATTCACTGCTGCCCTACGTTCGTTTTTCGTCGCTATGTGGGACCT TAGTACCACCTCTGTATACAACCCTTCCAAACTGTTCACGGAAGTTGGCA AGAAGAACCCCAACTTCCGTGGGCGTGCGCAACAGGACTCTCATGAACTG ATGAGAGTCCTGTTTGACGGCGTCGTTGAGGAAGAGAAGCAGCGCTTATC CAAGGTTCACAGGGGCATTCTTCCCCCCGTTCACGAAAGCGAGGTTTCAG ACTCTTCATCCGACAGTGGTACACTCACGTCTACAACTTCTCTCGACGAG ATAGCCGACGAGAGTCCAATAGTCGATGATGCAGTTGTGTTTATCGGTCC ACAGCTACCTGGAGAATCAATTTCGGACATTTCCAAAGCGTCCTCGGTCA CAGAGTCTGTTAACACAGCGTCTGCTTCTCTAGACGATGCTCAGTCACCA GCGAGCGAGAGTAGTTCGGCCGAAGCCAGCGAACCGGAACCGATTCCAGC TGAAAAGCTTCTCACCATAATTGAGCGTACATTTGGCGGTACTTTGTCAT CGACAATAGTTTGCAAAGAATGCGGGTCGAAGTCATCAGTAACAGAACCG TTTCTCGACCTCCAGCTTCCTCTGGTACCAAAAGAGGAGAAAAGTGAGGA AAAGGCCAAGGAGCAAACTTCCGACATTGATGAATCCGAAGCGCCTGAAA CGGTAAACGTTTCGGATGGAAAATCGCTGGATGCTCCCAAATTTGAGTAT TCGGAACTGGAGCAATCCGCTGTGACGACGAAAACCGTAGCTATACCGCC ACCTCCACCTCCCTTGCCACCGCCGCCTCGCACGGTGCGACCGAGTCAAG GCTCTCAGGTTTGTTCCGATCCCATGGACGAATTACGCAAGAAGGTAAAT CCTTACGAAGCGGAGCCAGTTCAGGAAAACCGCCTAATTGTTCATCCGAG CGTTCTCAACACAGAAAACGCGGTCTCATCTGATACAGAGGCGGTAATTG AAGACGATGACACTGATAGCTATTGTCTTCCATCTTTGTTCGACGACGAC TTCTGTGATAGCAATGACTCTGCATTGGAAGATGTGAAGGGCATGACCGC GTTTTCTACTTCCGAAGCAGCGCGAGCCCAAGACGAGAACAAGGCGTTGC CAGAAAGGCAGCCCACGACCGTCCAGAGCACCCGCCGTCCGTCGTCATTT ATCTCTACGTTTTTTGGCGGTTTCGGTGGAAGTTCCAGTGCCGCGCCCTA TGGCTATAAATCTATCATTGGTAGCTTGGAGGAGTTTACAAAAATTGAGG TGCTTGAAGGCGAGAATGCATACGGTTGCGAGGAATGTACCAGAAGGGAA AAACTTCGAGTTGCTTTGCAGAGGAAGCGTATTGTCACGAAGCCTCTTGT CGATAAGGTTCGGAAAGTAGCTCAACGAATCGAAGCCCTTCCACTTGTGG ACTCGTCCTCAGAACAAGGATCAGATGACCTCGATGTCCGATCTCAGGAG AAGAGGGAAAATGTGCAGTGCAAGATAACAAGCGTTGCATTCCAATCGTC GGTTGGTGCTTCTAGGGAGTCGCATACGTCTGAAATAGTGTCTTCCCCTG TCACTAGCAGCGAGAGCAGCAGTAGCGTATGTTCGGATGAAGATGGAGAT TTGATAGTTGAGGAAGAACTTGAGACTGAAAGAGGGAACGCTGGCGTCAA GGTTTCCCCTCTGACCAGGGCAGAGGAAGACAAACTGCTGAGAGGCGTCA AAGTTGATGTGCCTACCGTTCGTACTACGGCTGAAAAACGATTTATGATA CGAGAAGCCCCTGATGTTTTGGCCATTCAACTGAAGCGTTTCATGCAGAC AGGTTTCCGGGGGGGACTGCGGAAGATATCAGGCAGTGTCGCCTTCCCAG CTAAACTGGATATTACTAATTTCATGGATGTCGATAATGAGGACAGAGAT GATCACGAGGATAACTCACAGAACGTGACAAAAAGAAAACGGAAGGAGAA AGGTTGTACGGAGCCGGCAAGATCCGAAGCTTATCAATACATTCTTACCG GTGTTTGCGTTCACGGCGGTTCGCTTTCAGGTGGCCATTACACGGCTTAT GTTCGCGAAGGGGTGGAATCTGATAGCAGAGGTAGCTGGTACTTCTGCAA TGATTCAAAGATATCTAGAGCAACTGAAAAGGATGTTCTTAATAGCGAAC CCTATCTGCTGTATTACGAACGCGTCTAA back to topprotein sequence of Ggra9162.t1 >Ggra9162.t1 ID=Ggra9162.t1|Name=Ggra9162.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=843bp
MGRRVSQKAARRKGSKRQRAAEKRAERERNRLSARNATDPAAASHRLTLL REAVVRGDAPAPRGLTNLGNTCFFNAVMQNLARVATFREYFVGSAPCPGE GPFTAALRSFFVAMWDLSTTSVYNPSKLFTEVGKKNPNFRGRAQQDSHEL MRVLFDGVVEEEKQRLSKVHRGILPPVHESEVSDSSSDSGTLTSTTSLDE IADESPIVDDAVVFIGPQLPGESISDISKASSVTESVNTASASLDDAQSP ASESSSAEASEPEPIPAEKLLTIIERTFGGTLSSTIVCKECGSKSSVTEP FLDLQLPLVPKEEKSEEKAKEQTSDIDESEAPETVNVSDGKSLDAPKFEY SELEQSAVTTKTVAIPPPPPPLPPPPRTVRPSQGSQVCSDPMDELRKKVN PYEAEPVQENRLIVHPSVLNTENAVSSDTEAVIEDDDTDSYCLPSLFDDD FCDSNDSALEDVKGMTAFSTSEAARAQDENKALPERQPTTVQSTRRPSSF ISTFFGGFGGSSSAAPYGYKSIIGSLEEFTKIEVLEGENAYGCEECTRRE KLRVALQRKRIVTKPLVDKVRKVAQRIEALPLVDSSSEQGSDDLDVRSQE KRENVQCKITSVAFQSSVGASRESHTSEIVSSPVTSSESSSSVCSDEDGD LIVEEELETERGNAGVKVSPLTRAEEDKLLRGVKVDVPTVRTTAEKRFMI REAPDVLAIQLKRFMQTGFRGGLRKISGSVAFPAKLDITNFMDVDNEDRD DHEDNSQNVTKRKRKEKGCTEPARSEAYQYILTGVCVHGGSLSGGHYTAY VREGVESDSRGSWYFCNDSKISRATEKDVLNSEPYLLYYERV* back to topmRNA from alignment at tig00000075_pilon:269946..272474- Legend: polypeptideCDSexonstart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Ggra9162.t1 ID=Ggra9162.t1|Name=Ggra9162.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2529bp|location=Sequence derived from alignment at tig00000075_pilon:269946..272474- (Gracilaria gracilis GNS1m male) ATGGGGCGCCGCGTCAGCCAAAAGGCCGCGCGCAGGAAAGGCTCCAAGCG
CCAGCGCGCCGCCGAGAAGCGAGCCGAGCGCGAACGCAATCGCCTTTCTG
CCCGCAACGCCACCGACCCCGCCGCTGCCAGCCATCGCCTTACACTTCTT
AGGGAGGCCGTTGTTCGCGGCGATGCTCCCGCCCCCCGCGGCCTCACCAA
TCTAGGTAACACTTGCTTCTTCAATGCTGTCATGCAGAACCTTGCCCGCG
TGGCAACTTTCCGCGAATATTTCGTCGGAAGCGCGCCGTGCCCAGGTGAG
GGCCCATTCACTGCTGCCCTACGTTCGTTTTTCGTCGCTATGTGGGACCT
TAGTACCACCTCTGTATACAACCCTTCCAAACTGTTCACGGAAGTTGGCA
AGAAGAACCCCAACTTCCGTGGGCGTGCGCAACAGGACTCTCATGAACTG
ATGAGAGTCCTGTTTGACGGCGTCGTTGAGGAAGAGAAGCAGCGCTTATC
CAAGGTTCACAGGGGCATTCTTCCCCCCGTTCACGAAAGCGAGGTTTCAG
ACTCTTCATCCGACAGTGGTACACTCACGTCTACAACTTCTCTCGACGAG
ATAGCCGACGAGAGTCCAATAGTCGATGATGCAGTTGTGTTTATCGGTCC
ACAGCTACCTGGAGAATCAATTTCGGACATTTCCAAAGCGTCCTCGGTCA
CAGAGTCTGTTAACACAGCGTCTGCTTCTCTAGACGATGCTCAGTCACCA
GCGAGCGAGAGTAGTTCGGCCGAAGCCAGCGAACCGGAACCGATTCCAGC
TGAAAAGCTTCTCACCATAATTGAGCGTACATTTGGCGGTACTTTGTCAT
CGACAATAGTTTGCAAAGAATGCGGGTCGAAGTCATCAGTAACAGAACCG
TTTCTCGACCTCCAGCTTCCTCTGGTACCAAAAGAGGAGAAAAGTGAGGA
AAAGGCCAAGGAGCAAACTTCCGACATTGATGAATCCGAAGCGCCTGAAA
CGGTAAACGTTTCGGATGGAAAATCGCTGGATGCTCCCAAATTTGAGTAT
TCGGAACTGGAGCAATCCGCTGTGACGACGAAAACCGTAGCTATACCGCC
ACCTCCACCTCCCTTGCCACCGCCGCCTCGCACGGTGCGACCGAGTCAAG
GCTCTCAGGTTTGTTCCGATCCCATGGACGAATTACGCAAGAAGGTAAAT
CCTTACGAAGCGGAGCCAGTTCAGGAAAACCGCCTAATTGTTCATCCGAG
CGTTCTCAACACAGAAAACGCGGTCTCATCTGATACAGAGGCGGTAATTG
AAGACGATGACACTGATAGCTATTGTCTTCCATCTTTGTTCGACGACGAC
TTCTGTGATAGCAATGACTCTGCATTGGAAGATGTGAAGGGCATGACCGC
GTTTTCTACTTCCGAAGCAGCGCGAGCCCAAGACGAGAACAAGGCGTTGC
CAGAAAGGCAGCCCACGACCGTCCAGAGCACCCGCCGTCCGTCGTCATTT
ATCTCTACGTTTTTTGGCGGTTTCGGTGGAAGTTCCAGTGCCGCGCCCTA
TGGCTATAAATCTATCATTGGTAGCTTGGAGGAGTTTACAAAAATTGAGG
TGCTTGAAGGCGAGAATGCATACGGTTGCGAGGAATGTACCAGAAGGGAA
AAACTTCGAGTTGCTTTGCAGAGGAAGCGTATTGTCACGAAGCCTCTTGT
CGATAAGGTTCGGAAAGTAGCTCAACGAATCGAAGCCCTTCCACTTGTGG
ACTCGTCCTCAGAACAAGGATCAGATGACCTCGATGTCCGATCTCAGGAG
AAGAGGGAAAATGTGCAGTGCAAGATAACAAGCGTTGCATTCCAATCGTC
GGTTGGTGCTTCTAGGGAGTCGCATACGTCTGAAATAGTGTCTTCCCCTG
TCACTAGCAGCGAGAGCAGCAGTAGCGTATGTTCGGATGAAGATGGAGAT
TTGATAGTTGAGGAAGAACTTGAGACTGAAAGAGGGAACGCTGGCGTCAA
GGTTTCCCCTCTGACCAGGGCAGAGGAAGACAAACTGCTGAGAGGCGTCA
AAGTTGATGTGCCTACCGTTCGTACTACGGCTGAAAAACGATTTATGATA
CGAGAAGCCCCTGATGTTTTGGCCATTCAACTGAAGCGTTTCATGCAGAC
AGGTTTCCGGGGGGGACTGCGGAAGATATCAGGCAGTGTCGCCTTCCCAG
CTAAACTGGATATTACTAATTTCATGGATGTCGATAATGAGGACAGAGAT
GATCACGAGGATAACTCACAGAACGTGACAAAAAGAAAACGGAAGGAGAA
AGGTTGTACGGAGCCGGCAAGATCCGAAGCTTATCAATACATTCTTACCG
GTGTTTGCGTTCACGGCGGTTCGCTTTCAGGTGGCCATTACACGGCTTAT
GTTCGCGAAGGGGTGGAATCTGATAGCAGAGGTAGCTGGTACTTCTGCAA
TGATTCAAAGATATCTAGAGCAACTGAAAAGGATGTTCTTAATAGCGAAC
CCTATCTGCTGTATTACGAACGCGTCTAA back to topCoding sequence (CDS) from alignment at tig00000075_pilon:269946..272474- >Ggra9162.t1 ID=Ggra9162.t1|Name=Ggra9162.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2529bp|location=Sequence derived from alignment at tig00000075_pilon:269946..272474- (Gracilaria gracilis GNS1m male) ATGGGGCGCCGCGTCAGCCAAAAGGCCGCGCGCAGGAAAGGCTCCAAGCG CCAGCGCGCCGCCGAGAAGCGAGCCGAGCGCGAACGCAATCGCCTTTCTG CCCGCAACGCCACCGACCCCGCCGCTGCCAGCCATCGCCTTACACTTCTT AGGGAGGCCGTTGTTCGCGGCGATGCTCCCGCCCCCCGCGGCCTCACCAA TCTAGGTAACACTTGCTTCTTCAATGCTGTCATGCAGAACCTTGCCCGCG TGGCAACTTTCCGCGAATATTTCGTCGGAAGCGCGCCGTGCCCAGGTGAG GGCCCATTCACTGCTGCCCTACGTTCGTTTTTCGTCGCTATGTGGGACCT TAGTACCACCTCTGTATACAACCCTTCCAAACTGTTCACGGAAGTTGGCA AGAAGAACCCCAACTTCCGTGGGCGTGCGCAACAGGACTCTCATGAACTG ATGAGAGTCCTGTTTGACGGCGTCGTTGAGGAAGAGAAGCAGCGCTTATC CAAGGTTCACAGGGGCATTCTTCCCCCCGTTCACGAAAGCGAGGTTTCAG ACTCTTCATCCGACAGTGGTACACTCACGTCTACAACTTCTCTCGACGAG ATAGCCGACGAGAGTCCAATAGTCGATGATGCAGTTGTGTTTATCGGTCC ACAGCTACCTGGAGAATCAATTTCGGACATTTCCAAAGCGTCCTCGGTCA CAGAGTCTGTTAACACAGCGTCTGCTTCTCTAGACGATGCTCAGTCACCA GCGAGCGAGAGTAGTTCGGCCGAAGCCAGCGAACCGGAACCGATTCCAGC TGAAAAGCTTCTCACCATAATTGAGCGTACATTTGGCGGTACTTTGTCAT CGACAATAGTTTGCAAAGAATGCGGGTCGAAGTCATCAGTAACAGAACCG TTTCTCGACCTCCAGCTTCCTCTGGTACCAAAAGAGGAGAAAAGTGAGGA AAAGGCCAAGGAGCAAACTTCCGACATTGATGAATCCGAAGCGCCTGAAA CGGTAAACGTTTCGGATGGAAAATCGCTGGATGCTCCCAAATTTGAGTAT TCGGAACTGGAGCAATCCGCTGTGACGACGAAAACCGTAGCTATACCGCC ACCTCCACCTCCCTTGCCACCGCCGCCTCGCACGGTGCGACCGAGTCAAG GCTCTCAGGTTTGTTCCGATCCCATGGACGAATTACGCAAGAAGGTAAAT CCTTACGAAGCGGAGCCAGTTCAGGAAAACCGCCTAATTGTTCATCCGAG CGTTCTCAACACAGAAAACGCGGTCTCATCTGATACAGAGGCGGTAATTG AAGACGATGACACTGATAGCTATTGTCTTCCATCTTTGTTCGACGACGAC TTCTGTGATAGCAATGACTCTGCATTGGAAGATGTGAAGGGCATGACCGC GTTTTCTACTTCCGAAGCAGCGCGAGCCCAAGACGAGAACAAGGCGTTGC CAGAAAGGCAGCCCACGACCGTCCAGAGCACCCGCCGTCCGTCGTCATTT ATCTCTACGTTTTTTGGCGGTTTCGGTGGAAGTTCCAGTGCCGCGCCCTA TGGCTATAAATCTATCATTGGTAGCTTGGAGGAGTTTACAAAAATTGAGG TGCTTGAAGGCGAGAATGCATACGGTTGCGAGGAATGTACCAGAAGGGAA AAACTTCGAGTTGCTTTGCAGAGGAAGCGTATTGTCACGAAGCCTCTTGT CGATAAGGTTCGGAAAGTAGCTCAACGAATCGAAGCCCTTCCACTTGTGG ACTCGTCCTCAGAACAAGGATCAGATGACCTCGATGTCCGATCTCAGGAG AAGAGGGAAAATGTGCAGTGCAAGATAACAAGCGTTGCATTCCAATCGTC GGTTGGTGCTTCTAGGGAGTCGCATACGTCTGAAATAGTGTCTTCCCCTG TCACTAGCAGCGAGAGCAGCAGTAGCGTATGTTCGGATGAAGATGGAGAT TTGATAGTTGAGGAAGAACTTGAGACTGAAAGAGGGAACGCTGGCGTCAA GGTTTCCCCTCTGACCAGGGCAGAGGAAGACAAACTGCTGAGAGGCGTCA AAGTTGATGTGCCTACCGTTCGTACTACGGCTGAAAAACGATTTATGATA CGAGAAGCCCCTGATGTTTTGGCCATTCAACTGAAGCGTTTCATGCAGAC AGGTTTCCGGGGGGGACTGCGGAAGATATCAGGCAGTGTCGCCTTCCCAG CTAAACTGGATATTACTAATTTCATGGATGTCGATAATGAGGACAGAGAT GATCACGAGGATAACTCACAGAACGTGACAAAAAGAAAACGGAAGGAGAA AGGTTGTACGGAGCCGGCAAGATCCGAAGCTTATCAATACATTCTTACCG GTGTTTGCGTTCACGGCGGTTCGCTTTCAGGTGGCCATTACACGGCTTAT GTTCGCGAAGGGGTGGAATCTGATAGCAGAGGTAGCTGGTACTTCTGCAA TGATTCAAAGATATCTAGAGCAACTGAAAAGGATGTTCTTAATAGCGAAC CCTATCTGCTGTATTACGAACGCGTCTAA back to top
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