Ggra9246.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9246.t1
Unique NameGgra9246.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length194
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:571506..572087 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3055.EDP04616
PFAMsdUTPase
Max annot lvl3041|Chlorophyta
KEGG rclassRC00002
KEGG koko:K01520
KEGG ReactionR02100,R11896
KEGG Pathwayko00240,ko00983,ko01100,map00240,map00983,map01100
KEGG ModuleM00053
Evalue1.09e-58
EggNOG OGsCOG0756@1|root,KOG3370@2759|Eukaryota,37TVP@33090|Viridiplantae,34KHT@3041|Chlorophyta
EC3.6.1.23
DescriptiondUTPase
COG categoryF
BRITEko00000,ko00001,ko00002,ko01000,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9246Ggra9246Gracilaria gracilis GNS1m malegenetig00000075_pilon 571506..572087 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9246.t1.start1Ggra9246.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 571506..571508 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9246.t1.CDS1Ggra9246.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 571506..572087 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9246.t1.exon1Ggra9246.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 571506..572087 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9246.t1.stop1Ggra9246.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 572085..572087 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9246.t1Ggra9246.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 571506..572087 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9246.t1 ID=Ggra9246.t1|Name=Ggra9246.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=194bp
MKDTTNAAAPAATPAAPADSVLPAKRELSPKPADSAPKRECLEAPSSSEP
ALKVLKVHEKATLPKRGSPMSAGYDLAASEEVIIPARGRAVAKTGLKIAV
PVGCYGRVAPRSGLAVKKFIDTGAGVIDSDYRGEVGVVLFNFNDEDFKVE
VGDRVAQLIIEKICMGGVEEVKELDSTERGEGGFGSTGVETKA*
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spliced messenger RNA

>Ggra9246.t1 ID=Ggra9246.t1|Name=Ggra9246.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=582bp|location=Sequence derived from alignment at tig00000075_pilon:571506..572087+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGGACACCACTAATGCCGCCGCTCCCGCTGCGACCCCTGCAGCCCC
TGCTGACTCCGTGTTGCCCGCGAAGCGCGAGCTTTCACCGAAACCCGCTG
ACTCGGCTCCCAAACGGGAATGTCTCGAGGCTCCCAGCTCTTCTGAGCCT
GCGCTCAAGGTGCTCAAGGTTCACGAGAAGGCTACCCTTCCGAAGCGTGG
CTCTCCCATGTCGGCTGGCTATGACCTTGCCGCCTCAGAGGAAGTTATCA
TCCCAGCTCGCGGCCGCGCCGTTGCGAAGACCGGCTTGAAGATCGCTGTA
CCGGTCGGTTGCTACGGCCGTGTTGCTCCTCGCTCTGGCCTGGCCGTTAA
GAAATTCATTGACACAGGTGCTGGTGTCATCGATTCCGACTACCGCGGGG
AAGTTGGAGTGGTTTTGTTTAACTTCAATGATGAGGACTTCAAGGTTGAA
GTGGGGGATCGTGTGGCTCAGCTGATTATTGAGAAGATATGCATGGGAGG
TGTTGAAGAAGTTAAGGAGCTGGACAGCACTGAAAGGGGTGAAGGTGGTT
TCGGATCAACTGGTGTGGAGACTAAGGCCTAA
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protein sequence of Ggra9246.t1

>Ggra9246.t1 ID=Ggra9246.t1|Name=Ggra9246.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=194bp
MKDTTNAAAPAATPAAPADSVLPAKRELSPKPADSAPKRECLEAPSSSEP
ALKVLKVHEKATLPKRGSPMSAGYDLAASEEVIIPARGRAVAKTGLKIAV
PVGCYGRVAPRSGLAVKKFIDTGAGVIDSDYRGEVGVVLFNFNDEDFKVE
VGDRVAQLIIEKICMGGVEEVKELDSTERGEGGFGSTGVETKA*
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mRNA from alignment at tig00000075_pilon:571506..572087+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9246.t1 ID=Ggra9246.t1|Name=Ggra9246.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=582bp|location=Sequence derived from alignment at tig00000075_pilon:571506..572087+ (Gracilaria gracilis GNS1m male)
ATGAAGGACACCACTAATGCCGCCGCTCCCGCTGCGACCCCTGCAGCCCC
TGCTGACTCCGTGTTGCCCGCGAAGCGCGAGCTTTCACCGAAACCCGCTG
ACTCGGCTCCCAAACGGGAATGTCTCGAGGCTCCCAGCTCTTCTGAGCCT
GCGCTCAAGGTGCTCAAGGTTCACGAGAAGGCTACCCTTCCGAAGCGTGG
CTCTCCCATGTCGGCTGGCTATGACCTTGCCGCCTCAGAGGAAGTTATCA
TCCCAGCTCGCGGCCGCGCCGTTGCGAAGACCGGCTTGAAGATCGCTGTA
CCGGTCGGTTGCTACGGCCGTGTTGCTCCTCGCTCTGGCCTGGCCGTTAA
GAAATTCATTGACACAGGTGCTGGTGTCATCGATTCCGACTACCGCGGGG
AAGTTGGAGTGGTTTTGTTTAACTTCAATGATGAGGACTTCAAGGTTGAA
GTGGGGGATCGTGTGGCTCAGCTGATTATTGAGAAGATATGCATGGGAGG
TGTTGAAGAAGTTAAGGAGCTGGACAGCACTGAAAGGGGTGAAGGTGGTT
TCGGATCAACTGGTGTGGAGACTAAGGCCTAA
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Coding sequence (CDS) from alignment at tig00000075_pilon:571506..572087+

>Ggra9246.t1 ID=Ggra9246.t1|Name=Ggra9246.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=582bp|location=Sequence derived from alignment at tig00000075_pilon:571506..572087+ (Gracilaria gracilis GNS1m male)
ATGAAGGACACCACTAATGCCGCCGCTCCCGCTGCGACCCCTGCAGCCCC
TGCTGACTCCGTGTTGCCCGCGAAGCGCGAGCTTTCACCGAAACCCGCTG
ACTCGGCTCCCAAACGGGAATGTCTCGAGGCTCCCAGCTCTTCTGAGCCT
GCGCTCAAGGTGCTCAAGGTTCACGAGAAGGCTACCCTTCCGAAGCGTGG
CTCTCCCATGTCGGCTGGCTATGACCTTGCCGCCTCAGAGGAAGTTATCA
TCCCAGCTCGCGGCCGCGCCGTTGCGAAGACCGGCTTGAAGATCGCTGTA
CCGGTCGGTTGCTACGGCCGTGTTGCTCCTCGCTCTGGCCTGGCCGTTAA
GAAATTCATTGACACAGGTGCTGGTGTCATCGATTCCGACTACCGCGGGG
AAGTTGGAGTGGTTTTGTTTAACTTCAATGATGAGGACTTCAAGGTTGAA
GTGGGGGATCGTGTGGCTCAGCTGATTATTGAGAAGATATGCATGGGAGG
TGTTGAAGAAGTTAAGGAGCTGGACAGCACTGAAAGGGGTGAAGGTGGTT
TCGGATCAACTGGTGTGGAGACTAAGGCCTAA
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