Ggra9173.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9173.t1
Unique NameGgra9173.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length714
Homology
BLAST of Ggra9173.t1 vs. uniprot
Match: A0A2V3IPC1 (Nuclear pore glycoprotein p62 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPC1_9FLOR)

HSP 1 Score: 394 bits (1012), Expect = 5.140e-124
Identity = 227/304 (74.67%), Postives = 253/304 (83.22%), Query Frame = 0
Query:  416 STGASEKPSAAPPLF------SSTSAGTSAPSLPASGLPGTGASSQAHASSSSAALFSSSAKPSGTGLGQPSQVQTAGGKGEPLSVPSDIKELSLDEVVNKWTEEVADLAEQFQRGAALVSKWDRTIVANEDKIVSLHKDAQSLQIAHKELSNNLDVILSQQTELHSLLDALESDVERKIGSTNLKTESRSPYSTSSKLYGDVERESMHRLSLEIMEELDAMALTLRDLVLELNKGRSSARGDGVAGDTVSQIVSVLNAHLDSLQYLDESSSSLQKRLADVSRACEVISRDSDRMYIRRPGTMH 713
            S+  SEK S AP L        +TS G    +  A+ +P  G    A +SS++ ALF   +  +G   GQ +Q Q A GK EPLSVPSDIK+LSLDEVVNKWTEEVADLAEQFQRGAALVSKWDR IVANEDKIV+LHKDAQ+LQIAHKELSNNLDVILSQQTELHSLLDALE+DV+RKIG+  +KT+SRS Y TSSKLYGD ERESMHRLSLEIM+ELDAMALTLRDLVLELN+GRSSARGDG AGDTVSQIVSVLNAHLDSLQYLDESS+SLQKRLADVSRACEVI+R+SDRMY+RRP  M+
Sbjct:  390 SSAGSEKTSTAPSLLLTSSALGTTSTGVLGSASAAAQVPSLGL---AASSSNALALFGGGSS-AGVKPGQ-TQGQGAQGKAEPLSVPSDIKDLSLDEVVNKWTEEVADLAEQFQRGAALVSKWDRAIVANEDKIVTLHKDAQALQIAHKELSNNLDVILSQQTELHSLLDALEADVDRKIGNVMMKTDSRSTYRTSSKLYGDAERESMHRLSLEIMQELDAMALTLRDLVLELNRGRSSARGDGGAGDTVSQIVSVLNAHLDSLQYLDESSNSLQKRLADVSRACEVIARESDRMYVRRPDAMY 688          
BLAST of Ggra9173.t1 vs. uniprot
Match: R7Q8J9 (Nsp1_C domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q8J9_CHOCR)

HSP 1 Score: 298 bits (762), Expect = 4.020e-87
Identity = 155/220 (70.45%), Postives = 185/220 (84.09%), Query Frame = 0
Query:  494 SVPSDIKELSLDEVVNKWTEEVADLAEQFQRGAALVSKWDRTIVANEDKIVSLHKDAQSLQIAHKELSNNLDVILSQQTELHSLLDALESDVERKIGSTNLKTESRSPYSTSSKLYGDVERESMHRLSLEIMEELDAMALTLRDLVLELNKGRSSARGDGVAGDTVSQIVSVLNAHLDSLQYLDESSSSLQKRLADVSRACEVISRDSDRMYIRRPGTMH 713
            ++PSDIK+LSLDEVVNKWTEEV DLA QFQ+GA +VSKWDR IV+NEDKI SL++DAQS+QIAHKEL++NLD+ILSQQ ELHSLLD L+ DVERKIGS+  K  S     + +KL GD+ERESMHR+S+E+MEELD MALT+RDLV++LNKG S   G G AGDTVSQI+SVLNAHLDSLQYLDE+S SL KRL DV RACEV +R+++RMY RR   M+
Sbjct:  487 AIPSDIKDLSLDEVVNKWTEEVTDLATQFQKGARMVSKWDRAIVSNEDKINSLNRDAQSVQIAHKELNDNLDLILSQQNELHSLLDTLQIDVERKIGSSPSKPGSPHGGHSDTKLRGDIERESMHRMSIEVMEELDTMALTIRDLVVDLNKG-SEMTGRGRAGDTVSQIISVLNAHLDSLQYLDETSGSLHKRLTDVQRACEVATRETERMYGRRTAGMY 705          
BLAST of Ggra9173.t1 vs. uniprot
Match: A0A7S0BEI6 (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BEI6_9RHOD)

HSP 1 Score: 202 bits (514), Expect = 1.370e-52
Identity = 107/219 (48.86%), Postives = 155/219 (70.78%), Query Frame = 0
Query:  492 PLSVPSDIKELSLDEVVNKWTEEVADLAEQFQRGAALVSKWDRTIVANEDKIVSLHKDAQSLQIAHKELSNNLDVILSQQTELHSLLDALESDVERKIGSTNLKTESRSPYSTSSKLYGDVERESMHRLSLEIMEELDAMALTLRDLVLELNKGRSSARGDGVAGDTVSQIVSVLNAHLDSLQYLDESSSSLQKRLADVSRACEVISRDSDRMYIRRPG 710
            P  VPS+IKEL LDE++NKW+E+V +L EQF++ A  V +WDR IV NED+I++L++D Q+LQ +H+EL  NLD +L+QQTELH+LL+ALE +V+   G++       SP S + +   D ER   H L L IM ELD+MALTLR++VLE+N+ ++       + D + QIVSVLN+H+++LQYLDES+ S+QK++  V+R  E   R++D +  RR G
Sbjct:  421 PAEVPSEIKELKLDEIINKWSEQVEELVEQFRKQAVQVGRWDRQIVTNEDRILALNQDLQTLQGSHRELEMNLDTVLAQQTELHNLLNALEKEVDAMFGTSG------SP-SLAPRTNADKERAQTHELGLGIMRELDSMALTLREVVLEINQSQAPE-----SWDVLGQIVSVLNSHMNALQYLDESTGSVQKQIHQVARLAETTKREADSLRGRRYG 627          
BLAST of Ggra9173.t1 vs. uniprot
Match: A0A7S3EA93 (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EA93_9RHOD)

HSP 1 Score: 195 bits (495), Expect = 7.620e-50
Identity = 104/220 (47.27%), Postives = 153/220 (69.55%), Query Frame = 0
Query:  491 EPLSVPSDIKELSLDEVVNKWTEEVADLAEQFQRGAALVSKWDRTIVANEDKIVSLHKDAQSLQIAHKELSNNLDVILSQQTELHSLLDALESDVERKIGSTNLKTESRSPYSTSSKLYGDVERESMHRLSLEIMEELDAMALTLRDLVLELNKGRSSARGDGVAGDTVSQIVSVLNAHLDSLQYLDESSSSLQKRLADVSRACEVISRDSDRMYIRRPG 710
            +P  VPS+IKEL LDE++NKW+E+V +L EQF++ A  V +WDR IV NED+I++L++D Q+LQ +H+EL  NLD +L+QQTELH+LL+ALE +V+   G++       SP   + +   D ER   H L L IM ELD+MALTLRD+V E+N+ ++       + D + QIVSVLN+H+++LQYLDES+ ++QK++  V+R      R++D +  RR G
Sbjct:  441 KPPEVPSEIKELKLDEIINKWSEQVEELVEQFRKQAVQVGRWDRQIVTNEDRILALNQDLQTLQGSHRELEMNLDTVLAQQTELHNLLNALEKEVDAAFGTSG------SP-GLAPRTNADKERAQTHELGLGIMRELDSMALTLRDVVQEINQSQAPE-----SWDVLGQIVSVLNSHMNALQYLDESTGNVQKQIHQVARLAGSAKREADSLRGRRYG 648          
BLAST of Ggra9173.t1 vs. uniprot
Match: A0A5J4YS61 (Nuclear pore glycoprotein p62 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YS61_PORPP)

HSP 1 Score: 186 bits (472), Expect = 3.100e-47
Identity = 109/248 (43.95%), Postives = 157/248 (63.31%), Query Frame = 0
Query:  460 SSSAALFSSSAKPSGTGLGQPS------QVQTAGGKGEPLSVPSDIKELSLDEVVNKWTEEVADLAEQFQRGAALVSKWDRTIVANEDKIVSLHKDAQSLQIAHKELSNNLDVILSQQTELHSLLDALESDVERKIGSTNLKTESRSPYSTSSKLYGDVERESMHRLSLEIMEELDAMALTLRDLVLELNKGRSSARGDGVAGDTVSQIVSVLNAHLDSLQYLDESSSSLQKRLADVSRACEVISRDS 701
            S++A+  ++SA P    LG  S      Q Q AG       +PS+IK+L+LDEVV+KW+EE+ DL EQF++ A  V +WDR IVANED+I+SL+ D  +++ A KEL  N+D + SQQ+EL  LL+ALES+++R  G +          S   K   D++RE  H ++L + +ELD M  +L+D++ +LN+ R+ A      GDTV QIVSVLN+HL SL+YLD S   L  +L +VSR  E + RD+
Sbjct:  331 SATASNVAASAPPGTGALGASSSAPAAAQSQPAGALDIGAEIPSEIKDLNLDEVVSKWSEEMEDLVEQFRKYAVQVGRWDRQIVANEDRILSLNSDTMAIKAAEKELDMNIDTVASQQSELDHLLNALESELDRVDGES----------SGLGKTTADMDREQTHNMALGLADELDGMTTSLKDIIEQLNQSRTPA-----VGDTVGQIVSVLNSHLTSLEYLDSSCGRLNAKLQEVSRLAESVQRDT 563          
BLAST of Ggra9173.t1 vs. uniprot
Match: A0A8C9NT86 (Nucleoporin 62 C-terminal like n=1 Tax=Serinus canaria TaxID=9135 RepID=A0A8C9NT86_SERCA)

HSP 1 Score: 134 bits (336), Expect = 1.310e-31
Identity = 73/214 (34.11%), Postives = 122/214 (57.01%), Query Frame = 0
Query:  492 PLSVPSDIKELSLDEVVNKWTEEVADLAEQFQRGAALVSKWDRTIVANEDKIVSLHKDAQSLQIAHKELSNNLDVILSQQTELHSLLDALESDVERKIGSTNLKTESRSPYSTSSKLYGDVERESMHRLSLEIMEELDAMALTLRDLVLELNKGRSSARGDGVAGDTVSQIVSVLNAHLDSLQYLDESSSSLQKRLADVSRACEVISRDSDRMY 705
            PLS P  +    L+ ++NKW+ E+ D  + F   A  V+ WDR ++ N +KI SLH++ + +++  K L   LD ILSQQ EL  LL  LE  V+ + G+  L+             + D ERE  ++L+  I  +L  MA  L+D++  LN    ++ G     D + QI  +LNAH+DSLQ++D++S+ LQ+++ +V++ CE   ++ +R +
Sbjct:   53 PLSAPPVMTYAQLESLINKWSLELEDQEKHFLHQATQVNAWDRMLIENGEKITSLHREVEKVKVDQKRLDQELDFILSQQKELEDLLTPLEESVKEQSGTIYLQ-------------HADEERERTYKLAENIDAQLKRMAQDLKDIIDHLN----TSGGPADTSDPLQQICKILNAHMDSLQWIDQNSAVLQRKVEEVTKVCESRRKEQERSF 249          
BLAST of Ggra9173.t1 vs. uniprot
Match: R7VUU0 (Nuclear pore glycoprotein p62 n=6 Tax=Neognathae TaxID=8825 RepID=R7VUU0_COLLI)

HSP 1 Score: 133 bits (335), Expect = 8.050e-31
Identity = 73/214 (34.11%), Postives = 121/214 (56.54%), Query Frame = 0
Query:  492 PLSVPSDIKELSLDEVVNKWTEEVADLAEQFQRGAALVSKWDRTIVANEDKIVSLHKDAQSLQIAHKELSNNLDVILSQQTELHSLLDALESDVERKIGSTNLKTESRSPYSTSSKLYGDVERESMHRLSLEIMEELDAMALTLRDLVLELNKGRSSARGDGVAGDTVSQIVSVLNAHLDSLQYLDESSSSLQKRLADVSRACEVISRDSDRMY 705
            P S P  +    L+ ++NKW+ E+ D  + F   A  V+ WDR ++ N +KI SLH++ + +++  K L   LD ILSQQ EL  LL  LE  V+ + G+  L+             + D ERE  ++L+  I  +L  MA  L+D+   LN    ++RG     D + QI  +LNAH+DSLQ++D++S+ LQ+++ +V++ CE   ++ +R +
Sbjct:  116 PASAPPVMTYAQLESLINKWSLELEDQEKHFLHQATQVNAWDRMLIENGEKITSLHREVEKVKLDQKRLDQELDFILSQQKELEDLLTPLEESVKEQSGTIYLQ-------------HADEERERTYKLAENIDAQLKRMAQDLKDITEHLN----TSRGPADTSDPLQQICKILNAHMDSLQWIDQNSAVLQRKVEEVTKVCESRRKEQERSF 312          
BLAST of Ggra9173.t1 vs. uniprot
Match: A0A6B0S0Y1 (Nsp1_C domain-containing protein n=1 Tax=Bos mutus TaxID=72004 RepID=A0A6B0S0Y1_9CETA)

HSP 1 Score: 131 bits (329), Expect = 8.470e-31
Identity = 69/202 (34.16%), Postives = 119/202 (58.91%), Query Frame = 0
Query:  504 LDEVVNKWTEEVADLAEQFQRGAALVSKWDRTIVANEDKIVSLHKDAQSLQIAHKELSNNLDVILSQQTELHSLLDALESDVERKIGSTNLKTESRSPYSTSSKLYGDVERESMHRLSLEIMEELDAMALTLRDLVLELNKGRSSARGDGVAGDTVSQIVSVLNAHLDSLQYLDESSSSLQKRLADVSRACEVISRDSDRMY 705
            L+ ++NKW+ E+ D    F + A  V+ WDRT++ N ++I SLH++ + +++  K L   LD ILSQQ EL  LL  LE  V+ + G+ +L+             + D ERE  ++L+  I  +L  MA  L+D++  LN    ++ G     D + QI  +LNAH+DSLQ++D++S+ LQ+++ +V++ CE   ++ +R +
Sbjct:   53 LESLINKWSLELEDQERHFLQQATQVNAWDRTLIENGERITSLHREVEKVKLDQKRLDQELDFILSQQKELEDLLSPLEESVKEQSGTVHLQ-------------HADEEREKTYKLAENIDAQLKRMAQDLKDIIEHLN----TSGGPADTSDPLQQICKILNAHMDSLQWIDQNSALLQRKVEEVTKVCEGRRKEQERSF 237          
BLAST of Ggra9173.t1 vs. uniprot
Match: A0A8C2TIZ9 (Nucleoporin 62 n=1 Tax=Coturnix japonica TaxID=93934 RepID=A0A8C2TIZ9_COTJA)

HSP 1 Score: 134 bits (337), Expect = 9.730e-31
Identity = 74/214 (34.58%), Postives = 121/214 (56.54%), Query Frame = 0
Query:  492 PLSVPSDIKELSLDEVVNKWTEEVADLAEQFQRGAALVSKWDRTIVANEDKIVSLHKDAQSLQIAHKELSNNLDVILSQQTELHSLLDALESDVERKIGSTNLKTESRSPYSTSSKLYGDVERESMHRLSLEIMEELDAMALTLRDLVLELNKGRSSARGDGVAGDTVSQIVSVLNAHLDSLQYLDESSSSLQKRLADVSRACEVISRDSDRMY 705
            PLS P  +    L+ ++NKW+ E+ D  + F   A  V+ WDRT++ N +KI SLH++ + +++  K L   LD ILSQQ EL  LL  LE  V+ + G+  L+             + D ERE  ++L+  I  +L  MA  L+D++  LN     A       D + QI  +LNAH+DSLQ++D++S+ LQ+++ +V++ CE   ++ +R +
Sbjct:  154 PLSAPPVMTYAQLESLINKWSLELEDQEKHFLHQATQVNAWDRTLIENGEKITSLHREVEKVKLDQKRLDQELDFILSQQKELEDLLTPLEESVKEQSGTIYLQ-------------HADEERERTYKLAENIDAQLKRMAQDLKDIIEHLNTSGRPAD----TSDPLQQICKILNAHMDSLQWIDQNSALLQRKVEEVTKVCESRRKEQERSF 350          
BLAST of Ggra9173.t1 vs. uniprot
Match: A0A8C9NW03 (Nucleoporin 62 C-terminal like n=2 Tax=Carduelinae TaxID=37599 RepID=A0A8C9NW03_SERCA)

HSP 1 Score: 134 bits (336), Expect = 1.060e-30
Identity = 73/214 (34.11%), Postives = 122/214 (57.01%), Query Frame = 0
Query:  492 PLSVPSDIKELSLDEVVNKWTEEVADLAEQFQRGAALVSKWDRTIVANEDKIVSLHKDAQSLQIAHKELSNNLDVILSQQTELHSLLDALESDVERKIGSTNLKTESRSPYSTSSKLYGDVERESMHRLSLEIMEELDAMALTLRDLVLELNKGRSSARGDGVAGDTVSQIVSVLNAHLDSLQYLDESSSSLQKRLADVSRACEVISRDSDRMY 705
            PLS P  +    L+ ++NKW+ E+ D  + F   A  V+ WDR ++ N +KI SLH++ + +++  K L   LD ILSQQ EL  LL  LE  V+ + G+  L+             + D ERE  ++L+  I  +L  MA  L+D++  LN    ++ G     D + QI  +LNAH+DSLQ++D++S+ LQ+++ +V++ CE   ++ +R +
Sbjct:  143 PLSAPPVMTYAQLESLINKWSLELEDQEKHFLHQATQVNAWDRMLIENGEKITSLHREVEKVKVDQKRLDQELDFILSQQKELEDLLTPLEESVKEQSGTIYLQ-------------HADEERERTYKLAENIDAQLKRMAQDLKDIIDHLN----TSGGPADTSDPLQQICKILNAHMDSLQWIDQNSAVLQRKVEEVTKVCESRRKEQERSF 339          
The following BLAST results are available for this feature:
BLAST of Ggra9173.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IPC15.140e-12474.67Nuclear pore glycoprotein p62 n=1 Tax=Gracilariops... [more]
R7Q8J94.020e-8770.45Nsp1_C domain-containing protein n=1 Tax=Chondrus ... [more]
A0A7S0BEI61.370e-5248.86Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S3EA937.620e-5047.27Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A5J4YS613.100e-4743.95Nuclear pore glycoprotein p62 n=1 Tax=Porphyridium... [more]
A0A8C9NT861.310e-3134.11Nucleoporin 62 C-terminal like n=1 Tax=Serinus can... [more]
R7VUU08.050e-3134.11Nuclear pore glycoprotein p62 n=6 Tax=Neognathae T... [more]
A0A6B0S0Y18.470e-3134.16Nsp1_C domain-containing protein n=1 Tax=Bos mutus... [more]
A0A8C2TIZ99.730e-3134.58Nucleoporin 62 n=1 Tax=Coturnix japonica TaxID=939... [more]
A0A8C9NW031.060e-3034.11Nucleoporin 62 C-terminal like n=2 Tax=Carduelinae... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.20.5.170coord: 530..592
e-value: 3.8E-15
score: 57.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 270..294
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 332..488
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 230..258
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 332..497
NoneNo IPR availablePANTHERPTHR12084:SF0NUCLEOPORIN 62-LIKEcoord: 4..701
IPR007758Nucleoporin, NSP1-like, C-terminalPFAMPF05064Nsp1_Ccoord: 497..596
e-value: 4.2E-22
score: 78.1
IPR026010Nucleoporin NSP1/NUP62PANTHERPTHR12084NUCLEAR PORE GLYCOPROTEIN P62-RELATEDcoord: 4..701

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:295217..297358 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9173.t1Ggra9173.t1Gracilaria gracilis GNS1m malemRNAtig00000075_pilon 295217..297358 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9173.t1 ID=Ggra9173.t1|Name=Ggra9173.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=714bp
MSFSSSGGGFSFGSGASTNGFGFAQSNAFGSSTSASSGGLFGAPASSSSL
FGSSAAPPTFGTPSSSSLFGSGTVSSAFGTPAGAGQPASTSTSLFGTATP
FAGSASSGHAFASAGSLFGTPSASAQPSSASLFGGSSSSSAFGQPSGSLF
GASAAPSQSLFTTPSSSAFGSSSGSLFVPSSTPASASNSAPAPGSGFASG
FGASSAASSSFQASGSNFFSTPSAEATAAQSAANATSLFTTPSQPTAQPD
SSSGFGFSASASSSAAQASGFSFSVSDDEPKPSTSQAAAPPMTSASSAAE
GFSFNLSSTLSASAGQASTGFGFGTPSAAPSASLFSSSASSAPGPAPSSA
GTKSASSAAGASAPSSDFSFRTAPSGAASATASGTATSAQTSGGFSLGGS
APSSSPLGASTPLPSSTGASEKPSAAPPLFSSTSAGTSAPSLPASGLPGT
GASSQAHASSSSAALFSSSAKPSGTGLGQPSQVQTAGGKGEPLSVPSDIK
ELSLDEVVNKWTEEVADLAEQFQRGAALVSKWDRTIVANEDKIVSLHKDA
QSLQIAHKELSNNLDVILSQQTELHSLLDALESDVERKIGSTNLKTESRS
PYSTSSKLYGDVERESMHRLSLEIMEELDAMALTLRDLVLELNKGRSSAR
GDGVAGDTVSQIVSVLNAHLDSLQYLDESSSSLQKRLADVSRACEVISRD
SDRMYIRRPGTMH*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007758Nucleoporin_NSP1_C
IPR026010NSP1/NUP62