Ggra9266.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9266.t1
Unique Name	Ggra9266.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	567

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000075_pilon	contig	tig00000075_pilon:632519..634219 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	395961.Cyan7425_0297
PFAMs	Calx-beta,DUF4114,P_proprotein,Peptidase_S8,SBBP
Max annot lvl	1117\|Cyanobacteria
Evalue	4.87e-13
EggNOG OGs	COG1520@1\|root,COG1520@2\|Bacteria,1G342@1117\|Cyanobacteria
Description	PFAM Beta-propeller repeat
COG category	O

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9266	Ggra9266	Gracilaria gracilis GNS1m male	gene	tig00000075_pilon 632519..634219 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9266.t1.start1	Ggra9266.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000075_pilon 632519..632521 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9266.t1.CDS1	Ggra9266.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000075_pilon 632519..634219 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9266.t1.exon1	Ggra9266.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000075_pilon 632519..634219 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9266.t1.stop1	Ggra9266.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000075_pilon 634217..634219 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9266.t1	Ggra9266.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000075_pilon 632519..634219 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000075_pilon:632519..634219+
coding sequence from alignment at tig00000075_pilon:632519..634219+

mRNA sequence

>Ggra9266.t1 ID=Ggra9266.t1|Name=Ggra9266.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=567bp
MITSISVLCYITQALPSTESQFRAFRVGLSSEGYTSAVSLATDEHGNTFV
VGNTDGSFGKADGENVSAESIFIAKFSRSGIMIWLRRTGSAYVDKATSIY
FFGTNLYVTGFTKGNVTLGEQSEGQKFSRGIRDGFLMVYNSFTGKRLWSR
QYGMKATATQVERVAVSRRGGIIIAGRTNASLFLNGDRRVQDEEFFLARL
SHATGQIERKTQMETRSVWPFSWPQRLLIVEETSSVYVVLHTKEQDRRNM
GVVISLQFHNYDAVERVLSVGGHKVDADGYYGLSYDERSGKLVVSLTKGA
TRSTSANIMTPTFALRIVSNNTRPRQWTERAFSFDQGGGDIVKDVVMNGA
GLVMVLGSSKAQGLKTDDGKNVSSVPALWVYDVRTMKTVGSHIADNLNGL
HCDRITKFALDSDGNIVYAGVRSREDGTGEVLLGSFGVPPEYKWRSGDGN
SKPVKIYILENGSITTNEMLAVQDSKKSQSDDRQGVDSLNFGSIASICVG
SALVALVFAGLYAIVVKKRKRRSAQQEVIDSAIRSTNVQSLMHGGPHGAG
DQTDRPGLGGLFNDNL*

spliced messenger RNA

>Ggra9266.t1 ID=Ggra9266.t1|Name=Ggra9266.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1701bp|location=Sequence derived from alignment at tig00000075_pilon:632519..634219+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCACTTCGATAAGTGTTCTTTGTTACATCACGCAGGCATTGCCATC
AACTGAATCTCAATTTCGCGCCTTTCGAGTAGGTCTGTCATCGGAGGGGT
ATACATCAGCCGTATCATTGGCCACAGATGAGCACGGGAATACTTTCGTA
GTTGGTAATACCGACGGTTCCTTTGGCAAGGCAGACGGTGAAAATGTAAG
TGCCGAAAGCATATTCATTGCGAAGTTCAGCCGTTCTGGGATAATGATAT
GGCTTCGAAGAACAGGATCGGCATATGTAGACAAAGCAACCTCTATATAT
TTCTTTGGGACGAACCTATACGTAACTGGGTTTACGAAAGGGAACGTAAC
TCTTGGTGAACAATCAGAAGGGCAGAAATTCTCTCGTGGTATCAGGGATG
GATTCTTAATGGTTTACAACTCCTTCACGGGGAAAAGGTTGTGGTCGAGA
CAGTACGGCATGAAAGCCACGGCAACTCAAGTTGAACGAGTGGCTGTTTC
TAGACGTGGGGGCATCATTATCGCAGGCAGGACGAACGCGTCACTTTTCC
TGAATGGCGACAGAAGAGTGCAGGACGAAGAATTTTTCTTGGCTCGATTG
AGTCATGCTACAGGTCAGATTGAGAGAAAGACCCAGATGGAAACCCGGTC
TGTGTGGCCATTCTCATGGCCCCAAAGGCTTTTAATCGTTGAAGAGACTT
CATCTGTGTATGTTGTTCTGCACACTAAAGAGCAAGATAGGCGCAATATG
GGTGTTGTTATATCTTTGCAATTTCATAACTATGACGCAGTTGAACGAGT
ACTGAGTGTTGGTGGACACAAAGTCGATGCGGATGGGTACTATGGTCTCT
CATACGATGAAAGATCTGGTAAACTGGTTGTTTCATTGACGAAGGGCGCT
ACGCGTTCTACTTCTGCAAACATTATGACACCAACTTTTGCGCTACGGAT
TGTTTCGAACAATACAAGACCGAGACAATGGACTGAGCGGGCGTTTAGCT
TTGACCAGGGTGGTGGAGACATTGTGAAAGACGTTGTGATGAATGGAGCT
GGATTAGTAATGGTGTTGGGAAGTTCGAAAGCCCAAGGTCTGAAGACAGA
TGATGGGAAGAATGTAAGCTCTGTCCCAGCATTATGGGTTTATGATGTCC
GTACGATGAAGACTGTCGGTTCACACATCGCAGACAACTTGAACGGACTT
CACTGCGATAGGATTACAAAGTTTGCCTTGGACAGCGATGGAAACATTGT
GTACGCCGGAGTGAGAAGCAGAGAAGATGGAACCGGAGAAGTGTTGCTGG
GGAGCTTTGGTGTGCCACCCGAATACAAATGGAGATCGGGAGATGGGAAT
TCTAAGCCAGTGAAGATCTACATTCTAGAAAATGGTTCAATCACTACGAA
TGAAATGTTGGCTGTTCAGGATTCGAAGAAATCGCAAAGTGATGATAGGC
AAGGAGTAGATTCTCTTAATTTTGGTTCCATTGCAAGTATCTGCGTTGGT
TCAGCTTTAGTTGCACTAGTCTTTGCTGGCTTGTATGCAATAGTGGTTAA
AAAGAGAAAACGGCGAAGTGCACAGCAGGAGGTTATCGACAGTGCCATCC
GTTCCACTAACGTGCAGTCGTTGATGCACGGTGGTCCTCATGGGGCTGGT
GATCAAACAGACCGACCAGGACTGGGGGGATTATTCAATGACAATCTTTA
G

protein sequence of Ggra9266.t1

>Ggra9266.t1 ID=Ggra9266.t1|Name=Ggra9266.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=567bp
MITSISVLCYITQALPSTESQFRAFRVGLSSEGYTSAVSLATDEHGNTFV
VGNTDGSFGKADGENVSAESIFIAKFSRSGIMIWLRRTGSAYVDKATSIY
FFGTNLYVTGFTKGNVTLGEQSEGQKFSRGIRDGFLMVYNSFTGKRLWSR
QYGMKATATQVERVAVSRRGGIIIAGRTNASLFLNGDRRVQDEEFFLARL
SHATGQIERKTQMETRSVWPFSWPQRLLIVEETSSVYVVLHTKEQDRRNM
GVVISLQFHNYDAVERVLSVGGHKVDADGYYGLSYDERSGKLVVSLTKGA
TRSTSANIMTPTFALRIVSNNTRPRQWTERAFSFDQGGGDIVKDVVMNGA
GLVMVLGSSKAQGLKTDDGKNVSSVPALWVYDVRTMKTVGSHIADNLNGL
HCDRITKFALDSDGNIVYAGVRSREDGTGEVLLGSFGVPPEYKWRSGDGN
SKPVKIYILENGSITTNEMLAVQDSKKSQSDDRQGVDSLNFGSIASICVG
SALVALVFAGLYAIVVKKRKRRSAQQEVIDSAIRSTNVQSLMHGGPHGAG
DQTDRPGLGGLFNDNL*

mRNA from alignment at tig00000075_pilon:632519..634219+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9266.t1 ID=Ggra9266.t1|Name=Ggra9266.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1701bp|location=Sequence derived from alignment at tig00000075_pilon:632519..634219+ (Gracilaria gracilis GNS1m male)
ATGATCACTTCGATAAGTGTTCTTTGTTACATCACGCAGGCATTGCCATC
AACTGAATCTCAATTTCGCGCCTTTCGAGTAGGTCTGTCATCGGAGGGGT
ATACATCAGCCGTATCATTGGCCACAGATGAGCACGGGAATACTTTCGTA
GTTGGTAATACCGACGGTTCCTTTGGCAAGGCAGACGGTGAAAATGTAAG
TGCCGAAAGCATATTCATTGCGAAGTTCAGCCGTTCTGGGATAATGATAT
GGCTTCGAAGAACAGGATCGGCATATGTAGACAAAGCAACCTCTATATAT
TTCTTTGGGACGAACCTATACGTAACTGGGTTTACGAAAGGGAACGTAAC
TCTTGGTGAACAATCAGAAGGGCAGAAATTCTCTCGTGGTATCAGGGATG
GATTCTTAATGGTTTACAACTCCTTCACGGGGAAAAGGTTGTGGTCGAGA
CAGTACGGCATGAAAGCCACGGCAACTCAAGTTGAACGAGTGGCTGTTTC
TAGACGTGGGGGCATCATTATCGCAGGCAGGACGAACGCGTCACTTTTCC
TGAATGGCGACAGAAGAGTGCAGGACGAAGAATTTTTCTTGGCTCGATTG
AGTCATGCTACAGGTCAGATTGAGAGAAAGACCCAGATGGAAACCCGGTC
TGTGTGGCCATTCTCATGGCCCCAAAGGCTTTTAATCGTTGAAGAGACTT
CATCTGTGTATGTTGTTCTGCACACTAAAGAGCAAGATAGGCGCAATATG
GGTGTTGTTATATCTTTGCAATTTCATAACTATGACGCAGTTGAACGAGT
ACTGAGTGTTGGTGGACACAAAGTCGATGCGGATGGGTACTATGGTCTCT
CATACGATGAAAGATCTGGTAAACTGGTTGTTTCATTGACGAAGGGCGCT
ACGCGTTCTACTTCTGCAAACATTATGACACCAACTTTTGCGCTACGGAT
TGTTTCGAACAATACAAGACCGAGACAATGGACTGAGCGGGCGTTTAGCT
TTGACCAGGGTGGTGGAGACATTGTGAAAGACGTTGTGATGAATGGAGCT
GGATTAGTAATGGTGTTGGGAAGTTCGAAAGCCCAAGGTCTGAAGACAGA
TGATGGGAAGAATGTAAGCTCTGTCCCAGCATTATGGGTTTATGATGTCC
GTACGATGAAGACTGTCGGTTCACACATCGCAGACAACTTGAACGGACTT
CACTGCGATAGGATTACAAAGTTTGCCTTGGACAGCGATGGAAACATTGT
GTACGCCGGAGTGAGAAGCAGAGAAGATGGAACCGGAGAAGTGTTGCTGG
GGAGCTTTGGTGTGCCACCCGAATACAAATGGAGATCGGGAGATGGGAAT
TCTAAGCCAGTGAAGATCTACATTCTAGAAAATGGTTCAATCACTACGAA
TGAAATGTTGGCTGTTCAGGATTCGAAGAAATCGCAAAGTGATGATAGGC
AAGGAGTAGATTCTCTTAATTTTGGTTCCATTGCAAGTATCTGCGTTGGT
TCAGCTTTAGTTGCACTAGTCTTTGCTGGCTTGTATGCAATAGTGGTTAA
AAAGAGAAAACGGCGAAGTGCACAGCAGGAGGTTATCGACAGTGCCATCC
GTTCCACTAACGTGCAGTCGTTGATGCACGGTGGTCCTCATGGGGCTGGT
GATCAAACAGACCGACCAGGACTGGGGGGATTATTCAATGACAATCTTTA
G

Coding sequence (CDS) from alignment at tig00000075_pilon:632519..634219+

>Ggra9266.t1 ID=Ggra9266.t1|Name=Ggra9266.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1701bp|location=Sequence derived from alignment at tig00000075_pilon:632519..634219+ (Gracilaria gracilis GNS1m male)
ATGATCACTTCGATAAGTGTTCTTTGTTACATCACGCAGGCATTGCCATC
AACTGAATCTCAATTTCGCGCCTTTCGAGTAGGTCTGTCATCGGAGGGGT
ATACATCAGCCGTATCATTGGCCACAGATGAGCACGGGAATACTTTCGTA
GTTGGTAATACCGACGGTTCCTTTGGCAAGGCAGACGGTGAAAATGTAAG
TGCCGAAAGCATATTCATTGCGAAGTTCAGCCGTTCTGGGATAATGATAT
GGCTTCGAAGAACAGGATCGGCATATGTAGACAAAGCAACCTCTATATAT
TTCTTTGGGACGAACCTATACGTAACTGGGTTTACGAAAGGGAACGTAAC
TCTTGGTGAACAATCAGAAGGGCAGAAATTCTCTCGTGGTATCAGGGATG
GATTCTTAATGGTTTACAACTCCTTCACGGGGAAAAGGTTGTGGTCGAGA
CAGTACGGCATGAAAGCCACGGCAACTCAAGTTGAACGAGTGGCTGTTTC
TAGACGTGGGGGCATCATTATCGCAGGCAGGACGAACGCGTCACTTTTCC
TGAATGGCGACAGAAGAGTGCAGGACGAAGAATTTTTCTTGGCTCGATTG
AGTCATGCTACAGGTCAGATTGAGAGAAAGACCCAGATGGAAACCCGGTC
TGTGTGGCCATTCTCATGGCCCCAAAGGCTTTTAATCGTTGAAGAGACTT
CATCTGTGTATGTTGTTCTGCACACTAAAGAGCAAGATAGGCGCAATATG
GGTGTTGTTATATCTTTGCAATTTCATAACTATGACGCAGTTGAACGAGT
ACTGAGTGTTGGTGGACACAAAGTCGATGCGGATGGGTACTATGGTCTCT
CATACGATGAAAGATCTGGTAAACTGGTTGTTTCATTGACGAAGGGCGCT
ACGCGTTCTACTTCTGCAAACATTATGACACCAACTTTTGCGCTACGGAT
TGTTTCGAACAATACAAGACCGAGACAATGGACTGAGCGGGCGTTTAGCT
TTGACCAGGGTGGTGGAGACATTGTGAAAGACGTTGTGATGAATGGAGCT
GGATTAGTAATGGTGTTGGGAAGTTCGAAAGCCCAAGGTCTGAAGACAGA
TGATGGGAAGAATGTAAGCTCTGTCCCAGCATTATGGGTTTATGATGTCC
GTACGATGAAGACTGTCGGTTCACACATCGCAGACAACTTGAACGGACTT
CACTGCGATAGGATTACAAAGTTTGCCTTGGACAGCGATGGAAACATTGT
GTACGCCGGAGTGAGAAGCAGAGAAGATGGAACCGGAGAAGTGTTGCTGG
GGAGCTTTGGTGTGCCACCCGAATACAAATGGAGATCGGGAGATGGGAAT
TCTAAGCCAGTGAAGATCTACATTCTAGAAAATGGTTCAATCACTACGAA
TGAAATGTTGGCTGTTCAGGATTCGAAGAAATCGCAAAGTGATGATAGGC
AAGGAGTAGATTCTCTTAATTTTGGTTCCATTGCAAGTATCTGCGTTGGT
TCAGCTTTAGTTGCACTAGTCTTTGCTGGCTTGTATGCAATAGTGGTTAA
AAAGAGAAAACGGCGAAGTGCACAGCAGGAGGTTATCGACAGTGCCATCC
GTTCCACTAACGTGCAGTCGTTGATGCACGGTGGTCCTCATGGGGCTGGT
GATCAAACAGACCGACCAGGACTGGGGGGATTATTCAATGACAATCTTTA
G