Ggra9159.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9159.t1
Unique NameGgra9159.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length298
Homology
BLAST of Ggra9159.t1 vs. uniprot
Match: A0A2V3IS40 (Pre-mRNA-splicing factor 18 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IS40_9FLOR)

HSP 1 Score: 291 bits (744), Expect = 1.140e-94
Identity = 174/307 (56.68%), Postives = 215/307 (70.03%), Query Frame = 0
Query:    1 MDPSAALLKEIAKRKTAPSQDAKKWKSRVEIEEERSIAYYEKEQEQEETLRAKKRRRIGPVVPN------VQTNEPREVVSERDEVAKIEAEKGTSYDLKSHKKDKLVNEIGETALEYHDNPPKGSASENKGTGSSQVSRPPPAKHE------ETSVNCKEDQVHEHIRKHIRLWKSEIEQMSEGDRKKTKGRTMVKTFEQTKTWLKPLEKLLRKRKLKKAILDALRDIFDAVEERDYMKASRLYLERLAIGNAPWPMGATMVGIHARAAREKIGEDKIAHVMNDEQTRKYIQGVKRLLTVAERNFP 295
            MDP A L K I ++K  P   +KKW+SR EIEEE    Y ++E E +E   AKKR++IGP  P       +Q N P    S+ DE  +    +  S +L S   D    + GETA E  D        +N+G   +  +R P +K +      ET   C+EDQVHE I+K++R W++EI++M+  DR+K+KGR MV TFEQTKTWLKPLEKLLRKRKL+K IL AL+DIFDA EER+Y+KA+RLYLERLAIGNAPWPMGATMVGIHARAAREKIGEDKIAHVMNDE+TRKYIQG+KRLLTVA+R+FP
Sbjct:    1 MDPLAKLKKVIEEKKACPGNKSKKWRSRQEIEEESERIYKKREAELKEKQNAKKRQKIGPPPPRRTSPEVLQENAP----SDGDENRQDSIPRTDSKNLAST--DHSTGQDGETATE--DVTGSAEKPQNEGEIETHPNRSPISKEDKEKQKDETIKTCREDQVHEQIQKYMRWWRTEIQEMAAEDRRKSKGRQMVNTFEQTKTWLKPLEKLLRKRKLQKNILSALKDIFDAAEEREYVKANRLYLERLAIGNAPWPMGATMVGIHARAAREKIGEDKIAHVMNDEKTRKYIQGIKRLLTVAQRHFP 299          
BLAST of Ggra9159.t1 vs. uniprot
Match: R7QIS3 (Pre-mRNA-splicing factor 18 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QIS3_CHOCR)

HSP 1 Score: 212 bits (539), Expect = 7.160e-63
Identity = 105/150 (70.00%), Postives = 130/150 (86.67%), Query Frame = 0
Query:  146 NCKEDQVHEHIRKHIRLWKSEIEQMSEGDRKKTKGRTMVKTFEQTKTWLKPLEKLLRKRKLKKAILDALRDIFDAVEERDYMKASRLYLERLAIGNAPWPMGATMVGIHARAAREKIGEDKIAHVMNDEQTRKYIQGVKRLLTVAERNFP 295
            NCKED V+  +RK++ LW SEIE +S+ +R+ TKGR++V T+E+TK WLKPL +LLRKRKL K ILD L+ IF+A  ER+Y++A+ +YLE+LAIG APWPMGATMVGIHARAAREKIGEDKIAHVMND++ RKYIQGVKRLLTVA+R+FP
Sbjct:  220 NCKEDYVYLEMRKYMGLWASEIESISKEERRTTKGRSLVVTYEETKDWLKPLYRLLRKRKLPKKILDPLKGIFEAAAEREYIRANSIYLEQLAIGKAPWPMGATMVGIHARAAREKIGEDKIAHVMNDDRARKYIQGVKRLLTVAQRHFP 369          
BLAST of Ggra9159.t1 vs. uniprot
Match: pre-mRNA-splicing factor 18-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DB440 (pre-mRNA-splicing factor 18-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DB440)

HSP 1 Score: 192 bits (487), Expect = 6.550e-55
Identity = 95/155 (61.29%), Postives = 123/155 (79.35%), Query Frame = 0
Query:  141 EETSVNCKEDQVHEHIRKHIRLWKSEIEQMSEGDRKKTKGRTMVKTFEQTKTWLKPLEKLLRKRKLKKAILDALRDIFDAVEERDYMKASRLYLERLAIGNAPWPMGATMVGIHARAAREKIGEDKIAHVMNDEQTRKYIQGVKRLLTVAERNFP 295
            +E   +C ED V+  +R+ +R+W+ ++  M    R+  +GRT   T EQTK WLKPL K LRK++L   IL AL +IF+AVEER+Y++A+  Y E+LAIGNAPWPMGATMVGIHARAAREKIGEDKIAHVMNDE++RKYIQG+KRL+T+A+R+FP
Sbjct:  233 DEDRPSCPEDYVYRQMRRWVRMWEEDVLAMPPESRRSNQGRTAAATLEQTKEWLKPLSKQLRKQRLAPNILRALVNIFEAVEEREYVRANSYYYEQLAIGNAPWPMGATMVGIHARAAREKIGEDKIAHVMNDEKSRKYIQGIKRLVTLAQRHFP 387          
BLAST of Ggra9159.t1 vs. uniprot
Match: A0A7S1XAV3 (Pre-mRNA-splicing factor 18 n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XAV3_9RHOD)

HSP 1 Score: 162 bits (409), Expect = 1.180e-43
Identity = 85/147 (57.82%), Postives = 112/147 (76.19%), Query Frame = 0
Query:  149 EDQVHEHIRKHIRLWKSEIEQMSEGDRKKTKGRTMVKTFEQTKTWLKPLEKLLRKRKLKKAILDALRDIFDAVEERDYMKASRLYLERLAIGNAPWPMGATMVGIHARAAREKIGEDKIAHVMNDEQTRKYIQGVKRLLTVAERNFP 295
            ED V   IR+ +R+W++E+E  S  +++  KG+  + TFEQTK +++PLE LL ++ L   IL  +R +FD +  R+Y+KA+  YL RLAIGNAPWPMGATMVGIHAR AREKIGE KIAH+MNDEQTRKYIQ  KRL+T+A+R +P
Sbjct:  215 EDFVARQIRRLMRMWENELEARSAEEKRTAKGKAALATFEQTKEYVRPLETLLAQKTLNPNILKPMRKMFDFMTAREYVKANDEYL-RLAIGNAPWPMGATMVGIHARTAREKIGEGKIAHIMNDEQTRKYIQACKRLITMAQRWWP 360          
BLAST of Ggra9159.t1 vs. uniprot
Match: M2XS56 (Pre-mRNA-splicing factor 18 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XS56_GALSU)

HSP 1 Score: 159 bits (402), Expect = 4.520e-43
Identity = 81/141 (57.45%), Postives = 113/141 (80.14%), Query Frame = 0
Query:  155 HIRKHIRLWKSEIEQMSEGDRKKTKGRTMVKTFEQTKTWLKPLEKLLRKRKLKKAILDALRDIFDAVEERDYMKASRLYLERLAIGNAPWPMGATMVGIHARAAREKIGEDKIAHVMNDEQTRKYIQGVKRLLTVAERNFP 295
            ++R+ +++WK+E+EQ+ E  ++ + GR  + TFEQTK +LKPL + L+K++L K+IL +L  I   VE+R+Y+ A+  YL RLAIGNAPWP+GATMVGIHAR AREKI E KIAHVMNDE+TRKYIQ VKRL+T++++ +P
Sbjct:  177 YMRRLLKMWKAEVEQLDEETKRTSLGRKTLATFEQTKEYLKPLFRKLKKQQLDKSILTSLEKILRYVEQREYVLANDEYL-RLAIGNAPWPVGATMVGIHARTAREKISEGKIAHVMNDEETRKYIQAVKRLITLSQKWYP 316          
BLAST of Ggra9159.t1 vs. uniprot
Match: A0A7S2ZAH2 (Pre-mRNA-splicing factor 18 n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZAH2_9RHOD)

HSP 1 Score: 157 bits (397), Expect = 4.490e-42
Identity = 84/147 (57.14%), Postives = 109/147 (74.15%), Query Frame = 0
Query:  149 EDQVHEHIRKHIRLWKSEIEQMSEGDRKKTKGRTMVKTFEQTKTWLKPLEKLLRKRKLKKAILDALRDIFDAVEERDYMKASRLYLERLAIGNAPWPMGATMVGIHARAAREKIGEDKIAHVMNDEQTRKYIQGVKRLLTVAERNFP 295
            ED V   I K +  WK  ++     +++  KGR  + T+EQ+K +L+PLEK L++R+L   +L AL+ IF  VEER+Y++A+ +YL +LAIGNAPWPMGATMVGIHAR AREKIGE KIAHVMNDEQTRKYIQ VKRL+T+ +   P
Sbjct:  196 EDYVRGQINKLMAKWKEVLDNKPADEKRTQKGRKALATYEQSKEYLEPLEKKLKRRELGLNVLHALKQIFQFVEEREYVQANDVYL-KLAIGNAPWPMGATMVGIHARTAREKIGEGKIAHVMNDEQTRKYIQAVKRLITMTQSWSP 341          
BLAST of Ggra9159.t1 vs. uniprot
Match: D2V2Q2 (Pre-mRNA-splicing factor 18 n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2V2Q2_NAEGR)

HSP 1 Score: 136 bits (342), Expect = 2.480e-36
Identity = 65/137 (47.45%), Postives = 102/137 (74.45%), Query Frame = 0
Query:  160 IRLWKSEIEQMSEGDRKKTKGRTMVKTFEQTKTWLKPLEKLLRKRKLKKAILDALRDIFDAVEERDYMKASRLYLERLAIGNAPWPMGATMVGIHARAAREKIGEDKIAHVMNDEQTRKYIQGVKRLLTVAERNFPA 296
            ++ W+ +++ + E  +K  KG+     ++QTK+++KPL KLL+KR+L   I+ +L  I   + E++Y+KA+ +Y+E LAIGN PWP+G TMVGIHAR ARE+IG DKI H++NDE  R+Y+Q VKRL+T+A++ +P+
Sbjct:    1 MKEWRYKLDDLPEHVKKSAKGKHDATIYKQTKSYIKPLFKLLKKRQLADEIVQSLEPICSFMAEKEYVKANDVYME-LAIGNQPWPIGVTMVGIHARTARERIGSDKIKHILNDEDQRRYVQSVKRLMTLAQQLYPS 136          
BLAST of Ggra9159.t1 vs. uniprot
Match: pre-mRNA-splicing factor 18 n=1 Tax=Nymphaea colorata TaxID=210225 RepID=UPI00129EC070 (pre-mRNA-splicing factor 18 n=1 Tax=Nymphaea colorata TaxID=210225 RepID=UPI00129EC070)

HSP 1 Score: 143 bits (361), Expect = 3.720e-36
Identity = 74/149 (49.66%), Postives = 100/149 (67.11%), Query Frame = 0
Query:  147 CKEDQVHEHIRKHIRLWKSEIEQMSEGDRKKTKGRTMVKTFEQTKTWLKPLEKLLRKRKLKKAILDALRDIFDAVEERDYMKASRLYLERLAIGNAPWPMGATMVGIHARAAREKIGEDKIAHVMNDEQTRKYIQGVKRLLTVAERNFP 295
            C ED++    ++ +  W  E+EQ  E +++  KG++MV TF+Q   +L PL K  RKR L   I  ALR + D   ERDY+ A   Y+ +LAIGNAPWP+G TMVGIH R+AREKI  + +AH+MNDE TRKY+Q VKRL+T  +R +P
Sbjct:  232 CDEDKILVFFKRLLNEWNQELEQRPESEKRTAKGKSMVATFKQCARYLNPLFKFCRKRVLPDDIRQALRVVVDCCMERDYLAAMDQYI-KLAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSVKRLMTFCQRRYP 379          
BLAST of Ggra9159.t1 vs. uniprot
Match: A0A6I9TCH1 (Pre-mRNA-splicing factor 18 n=2 Tax=Lamiales TaxID=4143 RepID=A0A6I9TCH1_SESIN)

HSP 1 Score: 142 bits (357), Expect = 1.160e-35
Identity = 73/149 (48.99%), Postives = 101/149 (67.79%), Query Frame = 0
Query:  147 CKEDQVHEHIRKHIRLWKSEIEQMSEGDRKKTKGRTMVKTFEQTKTWLKPLEKLLRKRKLKKAILDALRDIFDAVEERDYMKASRLYLERLAIGNAPWPMGATMVGIHARAAREKIGEDKIAHVMNDEQTRKYIQGVKRLLTVAERNFP 295
            C ED++    +K +  W  E+ +MSE +++  KG++MV TF+Q   +L PL K  RK+ L   I  AL  + D   +RDY+ A   Y+ +LAIGNAPWP+G TMVGIH R+AREKI  + +AH+MNDE TRKY+Q VKRL+T A+R +P
Sbjct:  221 CDEDKILVFFKKLLNEWNQELNEMSEAEKRTAKGKSMVATFKQCARYLNPLFKFCRKKVLPDDIRQALMVVVDCCMKRDYLAAMDHYI-KLAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSVKRLMTFAQRRYP 368          
BLAST of Ggra9159.t1 vs. uniprot
Match: A0A6A4QYA3 (Pre-mRNA-splicing factor 18 n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A4QYA3_LUPAL)

HSP 1 Score: 137 bits (344), Expect = 1.650e-35
Identity = 69/149 (46.31%), Postives = 100/149 (67.11%), Query Frame = 0
Query:  147 CKEDQVHEHIRKHIRLWKSEIEQMSEGDRKKTKGRTMVKTFEQTKTWLKPLEKLLRKRKLKKAILDALRDIFDAVEERDYMKASRLYLERLAIGNAPWPMGATMVGIHARAAREKIGEDKIAHVMNDEQTRKYIQGVKRLLTVAERNFP 295
            C ED++    +K +  WK E+++M E +++  KG++MV TF+Q   +L PL K  RK+ L   I  AL  + +   +RDY+ A   Y+ ++AIGNAPWP+G TMVGIH R+AREKI  + +AH+MNDE T KY+Q VKRL+T  +R +P
Sbjct:   42 CGEDRILAFFKKLLNEWKQELDEMGESEKRTAKGKSMVATFKQCARYLTPLFKFCRKKVLPDDIRQALLVVVECCMKRDYLAAMDQYI-KMAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTHKYLQSVKRLMTFCQRRYP 189          
The following BLAST results are available for this feature:
BLAST of Ggra9159.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IS401.140e-9456.68Pre-mRNA-splicing factor 18 n=1 Tax=Gracilariopsis... [more]
R7QIS37.160e-6370.00Pre-mRNA-splicing factor 18 n=1 Tax=Chondrus crisp... [more]
pre-mRNA-splicing factor 18-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DB4406.550e-5561.29pre-mRNA-splicing factor 18-like n=1 Tax=Mercenari... [more]
A0A7S1XAV31.180e-4357.82Pre-mRNA-splicing factor 18 n=1 Tax=Compsopogon ca... [more]
M2XS564.520e-4357.45Pre-mRNA-splicing factor 18 n=1 Tax=Galdieria sulp... [more]
A0A7S2ZAH24.490e-4257.14Pre-mRNA-splicing factor 18 n=1 Tax=Rhodosorus mar... [more]
D2V2Q22.480e-3647.45Pre-mRNA-splicing factor 18 n=1 Tax=Naegleria grub... [more]
pre-mRNA-splicing factor 18 n=1 Tax=Nymphaea colorata TaxID=210225 RepID=UPI00129EC0703.720e-3649.66pre-mRNA-splicing factor 18 n=1 Tax=Nymphaea color... [more]
A0A6I9TCH11.160e-3548.99Pre-mRNA-splicing factor 18 n=2 Tax=Lamiales TaxID... [more]
A0A6A4QYA31.650e-3546.31Pre-mRNA-splicing factor 18 n=1 Tax=Lupinus albus ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004098Prp18PFAMPF02840Prp18coord: 156..295
e-value: 4.5E-48
score: 163.0
NoneNo IPR availableGENE3D1.20.940.10Functional domain of the splicing factor Prp18coord: 122..296
e-value: 1.5E-48
score: 167.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 120..137
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 71..107
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 44..148
NoneNo IPR availablePANTHERPTHR13007:SF19PRE-MRNA-SPLICING FACTOR 18coord: 82..296
NoneNo IPR availableSUPERFAMILY47938Functional domain of the splicing factor Prp18coord: 131..295
IPR039979Pre-mRNA-splicing factor 18PANTHERPTHR13007PRE-MRNA SPLICING FACTOR-RELATEDcoord: 82..296

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:264725..265618 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9159.t1Ggra9159.t1Gracilaria gracilis GNS1m malemRNAtig00000075_pilon 264725..265618 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9159.t1 ID=Ggra9159.t1|Name=Ggra9159.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=298bp
MDPSAALLKEIAKRKTAPSQDAKKWKSRVEIEEERSIAYYEKEQEQEETL
RAKKRRRIGPVVPNVQTNEPREVVSERDEVAKIEAEKGTSYDLKSHKKDK
LVNEIGETALEYHDNPPKGSASENKGTGSSQVSRPPPAKHEETSVNCKED
QVHEHIRKHIRLWKSEIEQMSEGDRKKTKGRTMVKTFEQTKTWLKPLEKL
LRKRKLKKAILDALRDIFDAVEERDYMKASRLYLERLAIGNAPWPMGATM
VGIHARAAREKIGEDKIAHVMNDEQTRKYIQGVKRLLTVAERNFPAP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004098Prp18
IPR039979PRPF18