Ggra9159.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9159.t1
Unique NameGgra9159.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length298
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:264725..265618 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703018.1
Preferred namePRPF18
PFAMsPRP4,Prp18
Max annot lvl2759|Eukaryota
KEGG koko:K10738,ko:K12817,ko:K20792
KEGG Pathwayko03040,map03040
GOsGO:0000350,GO:0000375,GO:0000377,GO:0000393,GO:0000398,GO:0000956,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005682,GO:0005684,GO:0006139,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006403,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008298,GO:0008380,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031323,GO:0031324,GO:0032268,GO:0032269,GO:0032991,GO:0033036,GO:0034622,GO:0034641,GO:0034655,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0046540,GO:0046700,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051179,GO:0051246,GO:0051248,GO:0051641,GO:0060255,GO:0065003,GO:0065007,GO:0070727,GO:0071020,GO:0071021,GO:0071025,GO:0071027,GO:0071028,GO:0071030,GO:0071033,GO:0071048,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097525,GO:0097526,GO:0120114,GO:1901360,GO:1901361,GO:1901575,GO:1990904
Evalue3.95e-44
EggNOG OGsKOG2808@1|root,KOG2808@2759|Eukaryota
EC3.6.4.12
Descriptionnuclear retention of unspliced pre-mRNA at the site of transcription
COG categoryS
BRITEko00000,ko00001,ko01000,ko03032,ko03036,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9159Ggra9159Gracilaria gracilis GNS1m malegenetig00000075_pilon 264725..265618 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9159.t1.stop1Ggra9159.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 264725..264727 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9159.t1.CDS1Ggra9159.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 264725..265618 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9159.t1.exon1Ggra9159.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 264725..265618 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9159.t1.start1Ggra9159.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 265616..265618 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9159.t1Ggra9159.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 264725..265618 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9159.t1 ID=Ggra9159.t1|Name=Ggra9159.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=298bp
MDPSAALLKEIAKRKTAPSQDAKKWKSRVEIEEERSIAYYEKEQEQEETL
RAKKRRRIGPVVPNVQTNEPREVVSERDEVAKIEAEKGTSYDLKSHKKDK
LVNEIGETALEYHDNPPKGSASENKGTGSSQVSRPPPAKHEETSVNCKED
QVHEHIRKHIRLWKSEIEQMSEGDRKKTKGRTMVKTFEQTKTWLKPLEKL
LRKRKLKKAILDALRDIFDAVEERDYMKASRLYLERLAIGNAPWPMGATM
VGIHARAAREKIGEDKIAHVMNDEQTRKYIQGVKRLLTVAERNFPAP*
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spliced messenger RNA

>Ggra9159.t1 ID=Ggra9159.t1|Name=Ggra9159.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=894bp|location=Sequence derived from alignment at tig00000075_pilon:264725..265618- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATCCATCGGCTGCCTTACTGAAGGAAATTGCGAAGAGGAAGACTGC
CCCGTCGCAAGATGCGAAGAAATGGAAGTCTAGAGTTGAAATAGAGGAGG
AGCGTAGTATTGCATACTACGAAAAGGAACAAGAACAAGAGGAAACCCTC
CGAGCGAAGAAACGGCGTAGAATCGGTCCAGTGGTACCCAATGTGCAGAC
TAACGAACCGAGAGAAGTTGTTTCTGAACGAGACGAGGTCGCTAAGATTG
AAGCGGAAAAAGGAACTTCTTATGATTTGAAATCTCACAAGAAAGATAAA
TTGGTGAACGAAATCGGAGAAACGGCCTTGGAATACCACGACAACCCACC
AAAAGGCTCTGCCTCGGAAAATAAAGGAACAGGCTCTAGCCAAGTGTCTC
GGCCACCGCCCGCGAAGCACGAGGAAACATCTGTTAATTGTAAAGAGGAC
CAAGTACATGAACATATTCGAAAGCATATTCGACTTTGGAAGTCCGAGAT
AGAACAAATGTCCGAAGGCGACCGTAAAAAGACCAAGGGCCGGACAATGG
TAAAAACATTCGAACAAACGAAGACATGGCTGAAACCTCTCGAAAAACTG
TTACGAAAGCGGAAGTTGAAGAAGGCTATCCTAGATGCTCTGAGGGACAT
ATTTGACGCTGTAGAAGAGAGAGATTACATGAAAGCAAGCAGGTTATACC
TTGAAAGGCTTGCAATTGGGAATGCCCCATGGCCTATGGGGGCTACAATG
GTGGGTATTCACGCCCGTGCAGCTCGCGAAAAAATAGGTGAAGATAAGAT
TGCTCATGTTATGAACGACGAACAAACACGGAAGTATATTCAGGGAGTTA
AACGTCTCCTGACCGTCGCTGAACGCAATTTCCCGGCACCTTGA
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protein sequence of Ggra9159.t1

>Ggra9159.t1 ID=Ggra9159.t1|Name=Ggra9159.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=298bp
MDPSAALLKEIAKRKTAPSQDAKKWKSRVEIEEERSIAYYEKEQEQEETL
RAKKRRRIGPVVPNVQTNEPREVVSERDEVAKIEAEKGTSYDLKSHKKDK
LVNEIGETALEYHDNPPKGSASENKGTGSSQVSRPPPAKHEETSVNCKED
QVHEHIRKHIRLWKSEIEQMSEGDRKKTKGRTMVKTFEQTKTWLKPLEKL
LRKRKLKKAILDALRDIFDAVEERDYMKASRLYLERLAIGNAPWPMGATM
VGIHARAAREKIGEDKIAHVMNDEQTRKYIQGVKRLLTVAERNFPAP*
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mRNA from alignment at tig00000075_pilon:264725..265618-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9159.t1 ID=Ggra9159.t1|Name=Ggra9159.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=894bp|location=Sequence derived from alignment at tig00000075_pilon:264725..265618- (Gracilaria gracilis GNS1m male)
ATGGATCCATCGGCTGCCTTACTGAAGGAAATTGCGAAGAGGAAGACTGC
CCCGTCGCAAGATGCGAAGAAATGGAAGTCTAGAGTTGAAATAGAGGAGG
AGCGTAGTATTGCATACTACGAAAAGGAACAAGAACAAGAGGAAACCCTC
CGAGCGAAGAAACGGCGTAGAATCGGTCCAGTGGTACCCAATGTGCAGAC
TAACGAACCGAGAGAAGTTGTTTCTGAACGAGACGAGGTCGCTAAGATTG
AAGCGGAAAAAGGAACTTCTTATGATTTGAAATCTCACAAGAAAGATAAA
TTGGTGAACGAAATCGGAGAAACGGCCTTGGAATACCACGACAACCCACC
AAAAGGCTCTGCCTCGGAAAATAAAGGAACAGGCTCTAGCCAAGTGTCTC
GGCCACCGCCCGCGAAGCACGAGGAAACATCTGTTAATTGTAAAGAGGAC
CAAGTACATGAACATATTCGAAAGCATATTCGACTTTGGAAGTCCGAGAT
AGAACAAATGTCCGAAGGCGACCGTAAAAAGACCAAGGGCCGGACAATGG
TAAAAACATTCGAACAAACGAAGACATGGCTGAAACCTCTCGAAAAACTG
TTACGAAAGCGGAAGTTGAAGAAGGCTATCCTAGATGCTCTGAGGGACAT
ATTTGACGCTGTAGAAGAGAGAGATTACATGAAAGCAAGCAGGTTATACC
TTGAAAGGCTTGCAATTGGGAATGCCCCATGGCCTATGGGGGCTACAATG
GTGGGTATTCACGCCCGTGCAGCTCGCGAAAAAATAGGTGAAGATAAGAT
TGCTCATGTTATGAACGACGAACAAACACGGAAGTATATTCAGGGAGTTA
AACGTCTCCTGACCGTCGCTGAACGCAATTTCCCGGCACCTTGA
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Coding sequence (CDS) from alignment at tig00000075_pilon:264725..265618-

>Ggra9159.t1 ID=Ggra9159.t1|Name=Ggra9159.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=894bp|location=Sequence derived from alignment at tig00000075_pilon:264725..265618- (Gracilaria gracilis GNS1m male)
ATGGATCCATCGGCTGCCTTACTGAAGGAAATTGCGAAGAGGAAGACTGC
CCCGTCGCAAGATGCGAAGAAATGGAAGTCTAGAGTTGAAATAGAGGAGG
AGCGTAGTATTGCATACTACGAAAAGGAACAAGAACAAGAGGAAACCCTC
CGAGCGAAGAAACGGCGTAGAATCGGTCCAGTGGTACCCAATGTGCAGAC
TAACGAACCGAGAGAAGTTGTTTCTGAACGAGACGAGGTCGCTAAGATTG
AAGCGGAAAAAGGAACTTCTTATGATTTGAAATCTCACAAGAAAGATAAA
TTGGTGAACGAAATCGGAGAAACGGCCTTGGAATACCACGACAACCCACC
AAAAGGCTCTGCCTCGGAAAATAAAGGAACAGGCTCTAGCCAAGTGTCTC
GGCCACCGCCCGCGAAGCACGAGGAAACATCTGTTAATTGTAAAGAGGAC
CAAGTACATGAACATATTCGAAAGCATATTCGACTTTGGAAGTCCGAGAT
AGAACAAATGTCCGAAGGCGACCGTAAAAAGACCAAGGGCCGGACAATGG
TAAAAACATTCGAACAAACGAAGACATGGCTGAAACCTCTCGAAAAACTG
TTACGAAAGCGGAAGTTGAAGAAGGCTATCCTAGATGCTCTGAGGGACAT
ATTTGACGCTGTAGAAGAGAGAGATTACATGAAAGCAAGCAGGTTATACC
TTGAAAGGCTTGCAATTGGGAATGCCCCATGGCCTATGGGGGCTACAATG
GTGGGTATTCACGCCCGTGCAGCTCGCGAAAAAATAGGTGAAGATAAGAT
TGCTCATGTTATGAACGACGAACAAACACGGAAGTATATTCAGGGAGTTA
AACGTCTCCTGACCGTCGCTGAACGCAATTTCCCGGCACCTTGA
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