Ggra9137.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9137.t1
Unique NameGgra9137.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length296
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:79990..80877 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMD100CT
PFAMsLON_substr_bdg
Max annot lvl2759|Eukaryota
Evalue1.53e-58
EggNOG OGsCOG2802@1|root,KOG4159@2759|Eukaryota
Descriptionhistone H2A-K13 ubiquitination
COG categoryI
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9137Ggra9137Gracilaria gracilis GNS1m malegenetig00000075_pilon 79990..80877 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9137.t1.stop1Ggra9137.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 79990..79992 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9137.t1.CDS1Ggra9137.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 79990..80877 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9137.t1.exon1Ggra9137.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 79990..80877 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9137.t1.start1Ggra9137.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 80875..80877 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9137.t1Ggra9137.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 79990..80877 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9137.t1 ID=Ggra9137.t1|Name=Ggra9137.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=296bp
MRSLVPLRLPPRPPRPPRLHAPPKRGRVQRPIMAEPIDGGTMPSFPGDEQ
KVNYFNAAEQPQQPADEPGLVELPLFPLQLVLTPAMNLPLHIFELRYRLL
FNRLRDGDPRFGIVLYDSATSSLAQVGCSAELTRFEPLPDGRIMTDNIGR
QRFKIVKIVDDKPYTRALVRFFDDKPPHTDLSPLVQDVSGALQDVLRLSN
KLYDKGLDLSPDIKRLAPDGRIPITDDRGWPSPSLLQEFSFSVCQVIDIP
LRDQQLLLQTEDTAQRLTREREMLDTARKYLAAQATIKDAGLGTL*
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spliced messenger RNA

>Ggra9137.t1 ID=Ggra9137.t1|Name=Ggra9137.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=888bp|location=Sequence derived from alignment at tig00000075_pilon:79990..80877- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCTCGCTCGTGCCGCTGCGCTTGCCGCCGCGCCCGCCGCGCCCGCC
GCGCCTGCATGCGCCGCCAAAACGCGGCCGCGTACAGCGCCCAATTATGG
CCGAGCCCATCGACGGCGGCACCATGCCGTCCTTTCCCGGCGACGAACAG
AAGGTCAACTATTTCAACGCCGCCGAGCAGCCGCAGCAGCCCGCGGATGA
GCCCGGCTTGGTGGAGTTGCCCCTGTTCCCGCTGCAACTCGTGCTCACGC
CCGCCATGAACCTGCCGTTGCATATCTTTGAGCTGCGTTACAGGCTGCTG
TTCAATCGACTCAGGGATGGCGACCCTAGGTTTGGCATTGTTTTGTATGA
CTCGGCTACCAGTTCGCTGGCGCAAGTGGGCTGTAGTGCAGAGCTTACTC
GCTTTGAACCGCTTCCTGATGGCCGCATCATGACCGATAATATCGGACGT
CAGCGCTTTAAAATCGTCAAGATTGTGGACGACAAGCCTTACACACGAGC
ACTTGTGCGATTCTTCGATGACAAACCGCCTCACACCGATTTGTCACCGC
TGGTGCAGGATGTTTCCGGCGCGCTGCAAGACGTGTTGCGTCTCAGCAAC
AAGCTTTACGACAAGGGCCTGGATCTCAGCCCCGATATCAAACGACTTGC
GCCGGACGGTCGCATTCCGATCACCGATGACCGCGGTTGGCCCTCGCCTT
CTTTACTGCAGGAGTTTTCGTTCTCCGTGTGTCAGGTCATTGACATTCCG
CTTCGTGACCAACAACTGCTGCTACAAACCGAAGATACTGCGCAACGACT
CACACGCGAACGAGAAATGTTGGACACTGCGAGAAAGTATCTCGCCGCAC
AGGCAACCATAAAGGATGCGGGATTAGGAACTCTCTAA
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protein sequence of Ggra9137.t1

>Ggra9137.t1 ID=Ggra9137.t1|Name=Ggra9137.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=296bp
MRSLVPLRLPPRPPRPPRLHAPPKRGRVQRPIMAEPIDGGTMPSFPGDEQ
KVNYFNAAEQPQQPADEPGLVELPLFPLQLVLTPAMNLPLHIFELRYRLL
FNRLRDGDPRFGIVLYDSATSSLAQVGCSAELTRFEPLPDGRIMTDNIGR
QRFKIVKIVDDKPYTRALVRFFDDKPPHTDLSPLVQDVSGALQDVLRLSN
KLYDKGLDLSPDIKRLAPDGRIPITDDRGWPSPSLLQEFSFSVCQVIDIP
LRDQQLLLQTEDTAQRLTREREMLDTARKYLAAQATIKDAGLGTL*
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mRNA from alignment at tig00000075_pilon:79990..80877-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9137.t1 ID=Ggra9137.t1|Name=Ggra9137.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=888bp|location=Sequence derived from alignment at tig00000075_pilon:79990..80877- (Gracilaria gracilis GNS1m male)
ATGCGCTCGCTCGTGCCGCTGCGCTTGCCGCCGCGCCCGCCGCGCCCGCC
GCGCCTGCATGCGCCGCCAAAACGCGGCCGCGTACAGCGCCCAATTATGG
CCGAGCCCATCGACGGCGGCACCATGCCGTCCTTTCCCGGCGACGAACAG
AAGGTCAACTATTTCAACGCCGCCGAGCAGCCGCAGCAGCCCGCGGATGA
GCCCGGCTTGGTGGAGTTGCCCCTGTTCCCGCTGCAACTCGTGCTCACGC
CCGCCATGAACCTGCCGTTGCATATCTTTGAGCTGCGTTACAGGCTGCTG
TTCAATCGACTCAGGGATGGCGACCCTAGGTTTGGCATTGTTTTGTATGA
CTCGGCTACCAGTTCGCTGGCGCAAGTGGGCTGTAGTGCAGAGCTTACTC
GCTTTGAACCGCTTCCTGATGGCCGCATCATGACCGATAATATCGGACGT
CAGCGCTTTAAAATCGTCAAGATTGTGGACGACAAGCCTTACACACGAGC
ACTTGTGCGATTCTTCGATGACAAACCGCCTCACACCGATTTGTCACCGC
TGGTGCAGGATGTTTCCGGCGCGCTGCAAGACGTGTTGCGTCTCAGCAAC
AAGCTTTACGACAAGGGCCTGGATCTCAGCCCCGATATCAAACGACTTGC
GCCGGACGGTCGCATTCCGATCACCGATGACCGCGGTTGGCCCTCGCCTT
CTTTACTGCAGGAGTTTTCGTTCTCCGTGTGTCAGGTCATTGACATTCCG
CTTCGTGACCAACAACTGCTGCTACAAACCGAAGATACTGCGCAACGACT
CACACGCGAACGAGAAATGTTGGACACTGCGAGAAAGTATCTCGCCGCAC
AGGCAACCATAAAGGATGCGGGATTAGGAACTCTCTAA
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Coding sequence (CDS) from alignment at tig00000075_pilon:79990..80877-

>Ggra9137.t1 ID=Ggra9137.t1|Name=Ggra9137.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=888bp|location=Sequence derived from alignment at tig00000075_pilon:79990..80877- (Gracilaria gracilis GNS1m male)
ATGCGCTCGCTCGTGCCGCTGCGCTTGCCGCCGCGCCCGCCGCGCCCGCC
GCGCCTGCATGCGCCGCCAAAACGCGGCCGCGTACAGCGCCCAATTATGG
CCGAGCCCATCGACGGCGGCACCATGCCGTCCTTTCCCGGCGACGAACAG
AAGGTCAACTATTTCAACGCCGCCGAGCAGCCGCAGCAGCCCGCGGATGA
GCCCGGCTTGGTGGAGTTGCCCCTGTTCCCGCTGCAACTCGTGCTCACGC
CCGCCATGAACCTGCCGTTGCATATCTTTGAGCTGCGTTACAGGCTGCTG
TTCAATCGACTCAGGGATGGCGACCCTAGGTTTGGCATTGTTTTGTATGA
CTCGGCTACCAGTTCGCTGGCGCAAGTGGGCTGTAGTGCAGAGCTTACTC
GCTTTGAACCGCTTCCTGATGGCCGCATCATGACCGATAATATCGGACGT
CAGCGCTTTAAAATCGTCAAGATTGTGGACGACAAGCCTTACACACGAGC
ACTTGTGCGATTCTTCGATGACAAACCGCCTCACACCGATTTGTCACCGC
TGGTGCAGGATGTTTCCGGCGCGCTGCAAGACGTGTTGCGTCTCAGCAAC
AAGCTTTACGACAAGGGCCTGGATCTCAGCCCCGATATCAAACGACTTGC
GCCGGACGGTCGCATTCCGATCACCGATGACCGCGGTTGGCCCTCGCCTT
CTTTACTGCAGGAGTTTTCGTTCTCCGTGTGTCAGGTCATTGACATTCCG
CTTCGTGACCAACAACTGCTGCTACAAACCGAAGATACTGCGCAACGACT
CACACGCGAACGAGAAATGTTGGACACTGCGAGAAAGTATCTCGCCGCAC
AGGCAACCATAAAGGATGCGGGATTAGGAACTCTCTAA
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