Ggra9217.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9217.t1
Unique NameGgra9217.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length376
Homology
BLAST of Ggra9217.t1 vs. uniprot
Match: A0A2V3IP80 (Chromophore lyase CpcS/CpeS 2 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IP80_9FLOR)

HSP 1 Score: 412 bits (1059), Expect = 2.960e-140
Identity = 238/377 (63.13%), Postives = 280/377 (74.27%), Query Frame = 0
Query:    1 MAFVPHSTFLGRSKSVRSLRKDVSANTCTHRPYKFVASDKVPPSPPEVRVNSNDAMQFFRHREGNWSSWRVTHHLAFRRSESGASEIQMQCLEKTDERIVALCKDWEVDPAKAQGGCYVTWLATMAWDQEGENHEGSTVFALVPDDDDIRKGKMLRDRGYAEIVPIAGTYHLDEHDDLNLITPYDGGEVVERFSFDGPDVVNRVSTVRRFGGFSTATFATETRAGNASEKEIKDHQG-NEELDVAALLDKMACFGVTGGGSPF-EVPETDKTQFAGAGRWGTTNSSSKPSTNSAFGSGF---TSRXXXXXXXXXXXXXXXXXXXXXXXXXXTKESPENIQGLSKKSIDAASDYGIDLSKVPPSMRQDFAASFDPDEK 372
            MAFVPH+TFL R+ SV   +K V  NT      KF  +     +     V S DAM+FFRHREGNW SWRVTHHLAFRRSESG S+I+M+CLE +DERIV+LCKDWEVDPAK+QGGC+VTW ATMAWDQEGENHEGSTVFALVPDDD+ RKG++LRDRGYAEIVPIAGTY LDEHD LNL TPY+GGEVVE+F+FDGPDVVNR+STVRRFGGFSTATFATETR   ++E++ +  +   ++L VAALL+++  F          +  +  +TQF G GRWG   +S KP+ NSAFGSGF   +S      XXXXXXXXXXX          T E+ +   G SKK+IDAA+D GIDLSKVPPSMR+DFAASFD  EK
Sbjct:    1 MAFVPHTTFLPRT-SVGRPQKHVRRNTIG----KFQRA-----TVRACSVKSVDAMEFFRHREGNWDSWRVTHHLAFRRSESGESKIKMECLESSDERIVSLCKDWEVDPAKSQGGCFVTWEATMAWDQEGENHEGSTVFALVPDDDNQRKGRILRDRGYAEIVPIAGTYFLDEHDALNLNTPYEGGEVVEKFAFDGPDVVNRMSTVRRFGGFSTATFATETRIHTSTEQQAETSKDVPDDLAVAALLNEIMLFSSQPDAKVIAQQQQKTETQFTGPGRWGVQANSGKPAPNSAFGSGFRRASSSNAAPRXXXXXXXXXXXSGSTDSSTPETGEASQGSDGFSKKTIDAAADAGIDLSKVPPSMREDFAASFDQYEK 367          
BLAST of Ggra9217.t1 vs. uniprot
Match: R7QJT7 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QJT7_CHOCR)

HSP 1 Score: 340 bits (871), Expect = 1.120e-112
Identity = 184/331 (55.59%), Postives = 225/331 (67.98%), Query Frame = 0
Query:   56 MQFFRHREGNWSSWRVTHHLAFRRSESGASEIQMQCLEKTDERIVALCKDWEVDPAKAQGGCYVTWLATMAWDQEGENHEGSTVFALVPDDDDIRKGKMLRDRGYAEIVPIAGTYHLDEHDDLNLITPYDGGEVVERFSFDGPDVVNRVSTVRRFGGFSTATFATETRAGNASEK---EIKDHQGNEELDVAALLDKMACFGVTGGGSPFEVPETDKTQFAGAG------RWGT-----TNSSSKPSTNSAFGSGFTSRXXXXXXXXXXXXXXXXXXXXXXXXXXTKESPENIQGLSKKSIDAASDYGIDLSKVPPSMRQDFAASFDPDEK 372
            M+FFRHR+G+WSSWRVTHHLAFRRSESG S IQM+ L+ TDERI +LC+DW+VDP  AQGGCYVTW ATMAWDQEGENHEG TVFALVP+ D++RKG++LRDRGYAEIVPIAGTYHLD+ DDLNL TPYDGG V E+FSFDGPD+VNR+STV+RFGG+STATFATE R G+A      E K+ +  E++ VA L+       V G G   +  +  +   AG G      R+G       NS ++PS+ SAFGSGF+S                            K       GLS++ ++AA   GIDL+K+PPSMR+DF ASF+   K
Sbjct:    1 MEFFRHRQGSWSSWRVTHHLAFRRSESGESNIQMKVLDPTDERIASLCRDWDVDPTSAQGGCYVTWKATMAWDQEGENHEGETVFALVPEKDNVRKGRILRDRGYAEIVPIAGTYHLDDSDDLNLSTPYDGGAVEEKFSFDGPDIVNRLSTVKRFGGYSTATFATERRVGSAPPAVWDEEKEGKSVEQM-VAELM-------VDGPGVLIDTVDEVEESSAGGGDLVGKERFGAGLGRAANSGARPSSQSAFGSGFSS---------------GASKKGNGEEGGAKSEEHGTNGLSREVMEAAEKAGIDLAKIPPSMREDFVASFNEKNK 308          
BLAST of Ggra9217.t1 vs. uniprot
Match: A0A5J4YSP0 (Phycocyanobilin lyase subunit CpcS n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YSP0_PORPP)

HSP 1 Score: 263 bits (671), Expect = 9.430e-81
Identity = 130/205 (63.41%), Postives = 157/205 (76.59%), Query Frame = 0
Query:   45 PPEVRVNSNDAMQFFRHREGNWSSWRVTHHLAFRRSESGASEIQMQCLEKTDERIVALCKDWEVDPAKAQGGCYVTWLATMAWDQEGENHEGSTVFALVPDD-DDIRKGKMLRDRGYAEIVPIAGTYHLDEHDDLNLITPYDGGEVVERFSFDGPDVVNRVSTVRRFGGFSTATFATETRAGNASEKEIKDHQGNEELDVAALLD 248
            P   +V   DAM+FFR REG W+SWRVTHHLAFRR+E+G S I MQCLE  DERI  LC   E+   +A GGCYVTW A M WDQEGE+HEGSTVFALVPD+  + R+G++LRDRGYAEIV IAGTY LD+ DDLNL+TPYDGGEVVE+F+FDGPD+VNRVSTV+RFGG++ +TFATE R G      + D +    +D  ++LD
Sbjct:  114 PASEKVRVKDAMEFFRKREGQWTSWRVTHHLAFRRAETGESNISMQCLEADDERIRELCVAHELPENQAVGGCYVTWKAQMGWDQEGESHEGSTVFALVPDEGSNGRRGRILRDRGYAEIVQIAGTYFLDDGDDLNLVTPYDGGEVVEKFAFDGPDIVNRVSTVKRFGGYANSTFATERRRGFG----VPDPELELTIDEFSILD 314          
BLAST of Ggra9217.t1 vs. uniprot
Match: A0A1X6PFA8 (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PFA8_PORUM)

HSP 1 Score: 259 bits (663), Expect = 9.170e-80
Identity = 164/329 (49.85%), Postives = 187/329 (56.84%), Query Frame = 0
Query:   50 VNSNDAMQFFRHREGNWSSWRVTHHLAFRRSESGASEIQMQCLEKTDERIVALCKDWEVDPAKAQGGCYVTWLATMAWDQEGENHEGSTVFALVPD-DDDIRKGKMLRDRGYAEIVPIAGTYHLDEHDDLNLITPYDGGEVVERFSFDGPDVVNRVSTVRRFGGFSTATFATETRAGNASE--KEIKDHQGNEELDVAALLDKMACFGVTGGGSPFEVPETDKTQFAGAGRWGTTNSSSKPSTNSAFGSGFTSRXXXXXXXXXXXXXXXXXXXXXXXXXXTKESPENIQGLSKKSID----AASDYGIDLSKVPPSMRQDFAASFDPDE 371
            V   DAM FFR REG W+SWRVTHHLAFRRSE+G S I+M  L  TDERIVALC D  V P +A GGC+VTW ATMAWD EGENH G TVFALVP+ D +  +G+MLRDRGYAEIVPIAGTY +D    LNLITPYDGGEVVERF FDGPD+V+R STV RFGG  TATF+TE R        + + DH            D  +  G    G+        +   A A R        KPS  SAF SGF                               E+P      ++  +D    AA   GIDLSKVPPSMR DF AS   D+
Sbjct:  124 VTPTDAMSFFRAREGTWASWRVTHHLAFRRSETGESAIKMVVLPATDERIVALCTDNGVGPDQAAGGCHVTWQATMAWDAEGENHAGETVFALVPEPDSEGARGRMLRDRGYAEIVPIAGTYSMDAAGGLNLITPYDGGEVVERFMFDGPDMVHRASTVCRFGGMGTATFSTERRMECTPPVTEVVFDHDMLVMGGPGLAPDDKSLDGSGAEGAVGNKSFQSRLGAATAAREAAATGG-KPSARSAFSSGF----------------------------GRAETPPPAAP-AEAEVDPVAAAAEKVGIDLSKVPPSMRADFIASLKQDD 422          
BLAST of Ggra9217.t1 vs. uniprot
Match: M2WSA5 (Uncharacterized protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2WSA5_GALSU)

HSP 1 Score: 237 bits (605), Expect = 4.080e-72
Identity = 121/185 (65.41%), Postives = 140/185 (75.68%), Query Frame = 0
Query:   50 VNSND---AMQFFRHREGNWSSWRVTHHLAFRRSESGASEIQMQCLEKTDERIVALCKDWEVDPAKAQGGCYVTWLATMAWDQEGENHEGSTVFALVPDDDDIRKGKMLRDRGYAEIVPIAGTYHLDEHDDLNLITPYDGGEVVERFSFDGPDVVNRVSTVRRFGGFSTATFATETRAGNASEKE 231
            VNS D   AM FFR REG+WSSWRVTHHLAFRR E G S+I M+ LEK+D RIV LC+   +DP+ A GGCYV W A ++WDQEGENHEGSTVFA+VPDD     GK+LRDRGYAEIV +AGT+ L    +L L TPYDGG+V E FSF G D+V R STV+RFGGFSTATF+TE R   AS K+
Sbjct:  104 VNSPDPKNAMDFFRLREGHWSSWRVTHHLAFRRDEQGVSDITMKVLEKSDPRIVELCEAHHLDPSLAAGGCYVEWAAQLSWDQEGENHEGSTVFAIVPDDAHCCSGKLLRDRGYAEIVQVAGTFRLTPSKELVLHTPYDGGDVEETFSFIGKDLVIRSSTVKRFGGFSTATFSTERRKDVASVKD 288          
BLAST of Ggra9217.t1 vs. uniprot
Match: K9UCY4 (Chromophore lyase CpcS/CpeS n=2 Tax=Chamaesiphon TaxID=217161 RepID=K9UCY4_CHAP6)

HSP 1 Score: 212 bits (540), Expect = 2.950e-64
Identity = 109/195 (55.90%), Postives = 132/195 (67.69%), Query Frame = 0
Query:   54 DAMQFFRHREGNWSSWRVTHHLAFRRSESGASEIQMQCLEKTDERIVALCKDWEVDPAKAQGGCYVTWLATMAWDQEGENHEGSTVFALVPDDDDIRKGKMLRDRGYAEIVPIAGTYHLDEHDDLNLITPYDGGEVVERFSFDGPDVVNRVSTVRRFGGFSTATFATETRAGNASEKEIKDHQGNEELDVAALLD 248
            D M+FF+H  G W S R THHLAFRRSE G SEI+++ L+  D  I+ALC+  +VDP+ A GGC VTW A+M WDQEGENHEG TVFALVPD +    G++LRDRGYAEIV +AG YH+D    L LIT YD    VERF F  P+V  R STV+R GGFSTATF TETR        + +  G+   + AA +D
Sbjct:    3 DVMEFFQHSAGKWRSKRTTHHLAFRRSEMGESEIEVKALDAKDPEIIALCESHQVDPSLAVGGCCVTWAASMGWDQEGENHEGKTVFALVPDPEKPHSGQLLRDRGYAEIVSVAGQYHMDNDGGLVLITDYDIMSSVERFWFPSPNVRVRSSTVKRMGGFSTATFCTETRV-------VDEANGDGGTNSAAYVD 190          
BLAST of Ggra9217.t1 vs. uniprot
Match: A0A351LH43 (Chromophore lyase CpcS/CpeS n=3 Tax=Cyanobacteria TaxID=1117 RepID=A0A351LH43_9CYAN)

HSP 1 Score: 211 bits (536), Expect = 2.030e-63
Identity = 109/180 (60.56%), Postives = 128/180 (71.11%), Query Frame = 0
Query:   54 DAMQFFRHREGNWSSWRVTHHLAFRRSESGASEIQMQCLEKTDERIVALCKDWEVDPAKAQGGCYVTWLATMAWDQEGENHEGSTVFALVPDDDDIRKGKMLRDRGYAEIVPIAGTYHLDEHDDLNLITPYDGGEVVERFSFDGPDVVNRVSTVRRFGGFSTATFATETRAGN--ASEKE 231
            DAM+FF+   G W S R THHLAF+RSE G SEIQ+  L   D  IVALC+  ++D   A GGC VTW  +M WDQEGENHEG TVFALVPD D+ R+G++LRDRGYAEIVP+ G YH+DE   L LIT YD     ERF F  PD+  R STV+RFGGFSTA+F TE+R G   AS+KE
Sbjct:    2 DAMEFFQQSAGRWRSQRTTHHLAFKRSEVGESEIQVDALAADDPEIVALCEFHQIDGNLAIGGCRVTWGGSMGWDQEGENHEGKTVFALVPDADNPRQGRLLRDRGYAEIVPVVGQYHMDEDGGLVLITEYDTMSSEERFWFASPDLRMRSSTVKRFGGFSTASFCTESRIGTDLASKKE 181          
BLAST of Ggra9217.t1 vs. uniprot
Match: CPXS2 (Chromophore lyase CpcS/CpeS 2 n=8 Tax=Synechocystis TaxID=1142 RepID=CPXS2_SYNY3)

HSP 1 Score: 209 bits (532), Expect = 3.620e-63
Identity = 99/170 (58.24%), Postives = 130/170 (76.47%), Query Frame = 0
Query:   54 DAMQFFRHREGNWSSWRVTHHLAFRRSESGASEIQMQCLEKTDERIVALCKDWEVDPAKAQGGCYVTWLATMAWDQEGENHEGSTVFALVPDDDDIRKGKMLRDRGYAEIVPIAGTYHLDEHDDLNLITPYDGGEVVERFSFDGPDVVNRVSTVRRFGGFSTATFATETR 223
            DAM+FFR+  GNW S R THHLAFRR+E+G SEI ++ L   D++IV +C+  + DPAKA GG +V W + MAWD+E ENHEG+TVFAL+PD+D+ ++G +LR+RGYAEIVPIAG YH+DE + L L+T Y+    +ERF F  PD+  R STV+RFGGF+TAT+ TE R
Sbjct:    2 DAMEFFRNSSGNWRSQRTTHHLAFRRAETGTSEIFVEALGADDQKIVEICEMHDCDPAKAVGGAFVRWESAMAWDKEDENHEGTTVFALIPDEDNPQQGLLLRERGYAEIVPIAGRYHIDEEEALVLVTEYETMTTIERFWFANPDMRLRTSTVQRFGGFNTATYCTEMR 171          
BLAST of Ggra9217.t1 vs. uniprot
Match: A0A845X3G6 (Chromophore lyase CpcS/CpeS n=1 Tax=Spirulina sp. SIO3F2 TaxID=2607816 RepID=A0A845X3G6_9CYAN)

HSP 1 Score: 209 bits (531), Expect = 5.460e-63
Identity = 104/182 (57.14%), Postives = 127/182 (69.78%), Query Frame = 0
Query:   54 DAMQFFRHREGNWSSWRVTHHLAFRRSESGASEIQMQCLEKTDERIVALCKDWEVDPAKAQGGCYVTWLATMAWDQEGENHEGSTVFALVPDDDDIRKGKMLRDRGYAEIVPIAGTYHLDEHDDLNLITPYDGGEVVERFSFDGPDVVNRVSTVRRFGGFSTATFATETRAG-NASEKEIKD 234
            DAM FF    G W S R THHL FRR+ESG S+IQ++ L   D RIV +C+  EVDP+ A GG YV W   MAWD+EGE+H GSTVFAL+PDD+  R GK+LR+RGYAE+VP+AG Y +D  D LNLIT YD   V ERF F  PD+  R STV+RFGGF+TATF  E R   +A + ++ D
Sbjct:    2 DAMTFFEKSSGRWQSQRTTHHLPFRRAESGGSDIQVEALPANDSRIVEICQMHEVDPSLAIGGAYVAWDGAMAWDKEGEDHAGSTVFALIPDDETGRTGKLLRERGYAEVVPVAGRYEMDAEDGLNLITDYDTMSVEERFWFVNPDLRLRTSTVKRFGGFNTATFCAEARQRPDAEQTDVTD 183          
BLAST of Ggra9217.t1 vs. uniprot
Match: phycobiliprotein lyase n=1 Tax=Brasilonema sp. UFV-L1 TaxID=2234130 RepID=UPI00145CCAEB (phycobiliprotein lyase n=1 Tax=Brasilonema sp. UFV-L1 TaxID=2234130 RepID=UPI00145CCAEB)

HSP 1 Score: 209 bits (532), Expect = 8.090e-63
Identity = 104/182 (57.14%), Postives = 128/182 (70.33%), Query Frame = 0
Query:   54 DAMQFFRHREGNWSSWRVTHHLAFRRSESGASEIQMQCLEKTDERIVALCKDWEVDPAKAQGGCYVTWLATMAWDQEGENHEGSTVFALVPDDDDIRKGKMLRDRGYAEIVPIAGTYHLDEHDDLNLITPYDGGEVVERFSFDGPDVVNRVSTVRRFGGFSTATFATETRAG--NASEKEIK 233
            DAM+FF+   G W S R THHLAF+RSE G S+I++  L   D  ++ALC+   +D   A GGC V+W  +M WDQEGENHEG TVFALVPD D+ RKG++LRDRGY EIVP+ G YH+D+ D L LIT YD    +ERF F  PD+  R STV+RFGGFSTA+F TETR G  + S  E+K
Sbjct:    2 DAMEFFQQSAGCWRSQRTTHHLAFKRSEVGESQIKVDTLAADDPEVIALCEFHSIDANLAVGGCSVSWGGSMGWDQEGENHEGKTVFALVPDADNPRKGRLLRDRGYGEIVPVVGQYHMDDDDGLVLITEYDTMSSIERFWFGSPDLRMRTSTVKRFGGFSTASFCTETRIGTDSLSHPEVK 183          
The following BLAST results are available for this feature:
BLAST of Ggra9217.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IP802.960e-14063.13Chromophore lyase CpcS/CpeS 2 n=1 Tax=Gracilariops... [more]
R7QJT71.120e-11255.59Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A5J4YSP09.430e-8163.41Phycocyanobilin lyase subunit CpcS n=1 Tax=Porphyr... [more]
A0A1X6PFA89.170e-8049.85Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
M2WSA54.080e-7265.41Uncharacterized protein n=1 Tax=Galdieria sulphura... [more]
K9UCY42.950e-6455.90Chromophore lyase CpcS/CpeS n=2 Tax=Chamaesiphon T... [more]
A0A351LH432.030e-6360.56Chromophore lyase CpcS/CpeS n=3 Tax=Cyanobacteria ... [more]
CPXS23.620e-6358.24Chromophore lyase CpcS/CpeS 2 n=8 Tax=Synechocysti... [more]
A0A845X3G65.460e-6357.14Chromophore lyase CpcS/CpeS n=1 Tax=Spirulina sp. ... [more]
phycobiliprotein lyase n=1 Tax=Brasilonema sp. UFV-L1 TaxID=2234130 RepID=UPI00145CCAEB8.090e-6357.14phycobiliprotein lyase n=1 Tax=Brasilonema sp. UFV... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 371..375
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 263..375
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 274..340
NoneNo IPR availableCDDcd19433lipocalin_CpcS-CpeScoord: 54..223
e-value: 2.69293E-70
score: 216.019
IPR018536Chromophore lyase CpcS/CpeSPFAMPF09367CpeScoord: 54..223
e-value: 2.8E-57
score: 193.2
IPR018536Chromophore lyase CpcS/CpeSHAMAPMF_01459Chrphore_lyase_CpxScoord: 53..224
score: 22.43527
IPR012674CalycinGENE3D2.40.128.20coord: 50..239
e-value: 4.5E-52
score: 178.5

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:408980..410107 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9217.t1Ggra9217.t1Gracilaria gracilis GNS1m malemRNAtig00000075_pilon 408980..410107 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9217.t1 ID=Ggra9217.t1|Name=Ggra9217.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=376bp
MAFVPHSTFLGRSKSVRSLRKDVSANTCTHRPYKFVASDKVPPSPPEVRV
NSNDAMQFFRHREGNWSSWRVTHHLAFRRSESGASEIQMQCLEKTDERIV
ALCKDWEVDPAKAQGGCYVTWLATMAWDQEGENHEGSTVFALVPDDDDIR
KGKMLRDRGYAEIVPIAGTYHLDEHDDLNLITPYDGGEVVERFSFDGPDV
VNRVSTVRRFGGFSTATFATETRAGNASEKEIKDHQGNEELDVAALLDKM
ACFGVTGGGSPFEVPETDKTQFAGAGRWGTTNSSSKPSTNSAFGSGFTSR
STKNMAEKPSVNSAFSSGFGNSSNGTTKESPENIQGLSKKSIDAASDYGI
DLSKVPPSMRQDFAASFDPDEKKST*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR018536CpcS/CpeS
IPR012674Calycin