Ggra9217.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9217.t1
Unique NameGgra9217.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length376
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:408980..410107 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703260.1
PFAMsCpeS
Max annot lvl2759|Eukaryota
Evalue1.78e-73
EggNOG OGs28IBS@1|root,2T1HQ@2759|Eukaryota
DescriptionCpeS-like protein
COG categoryE
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9217Ggra9217Gracilaria gracilis GNS1m malegenetig00000075_pilon 408980..410107 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9217.t1.start1Ggra9217.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 408980..408982 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9217.t1.CDS1Ggra9217.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 408980..410107 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9217.t1.exon1Ggra9217.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 408980..410107 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9217.t1.stop1Ggra9217.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 410105..410107 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9217.t1Ggra9217.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 408980..410107 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9217.t1 ID=Ggra9217.t1|Name=Ggra9217.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=376bp
MAFVPHSTFLGRSKSVRSLRKDVSANTCTHRPYKFVASDKVPPSPPEVRV
NSNDAMQFFRHREGNWSSWRVTHHLAFRRSESGASEIQMQCLEKTDERIV
ALCKDWEVDPAKAQGGCYVTWLATMAWDQEGENHEGSTVFALVPDDDDIR
KGKMLRDRGYAEIVPIAGTYHLDEHDDLNLITPYDGGEVVERFSFDGPDV
VNRVSTVRRFGGFSTATFATETRAGNASEKEIKDHQGNEELDVAALLDKM
ACFGVTGGGSPFEVPETDKTQFAGAGRWGTTNSSSKPSTNSAFGSGFTSR
STKNMAEKPSVNSAFSSGFGNSSNGTTKESPENIQGLSKKSIDAASDYGI
DLSKVPPSMRQDFAASFDPDEKKST*
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spliced messenger RNA

>Ggra9217.t1 ID=Ggra9217.t1|Name=Ggra9217.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1128bp|location=Sequence derived from alignment at tig00000075_pilon:408980..410107+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTTTGTTCCGCACTCCACTTTCCTTGGTCGCTCCAAATCCGTTCG
CTCCCTGCGAAAAGATGTAAGCGCGAACACTTGTACACATCGCCCCTACA
AATTCGTTGCGTCCGACAAGGTTCCTCCTTCTCCTCCTGAAGTTCGAGTC
AATTCCAATGACGCAATGCAATTCTTTCGTCATCGCGAGGGGAACTGGAG
CTCATGGCGAGTTACGCATCATCTAGCCTTCCGCCGTTCAGAGTCTGGCG
CATCTGAAATTCAAATGCAATGTCTCGAGAAAACCGATGAACGTATTGTT
GCATTATGCAAAGACTGGGAAGTAGACCCTGCTAAAGCTCAAGGGGGATG
TTACGTCACGTGGTTAGCTACCATGGCTTGGGATCAAGAAGGGGAGAATC
ACGAAGGTTCCACAGTGTTTGCGCTGGTTCCAGACGATGATGACATTCGC
AAAGGCAAAATGCTACGCGATAGGGGATATGCTGAAATTGTACCCATCGC
AGGTACTTATCACCTTGACGAGCACGATGACCTAAACCTTATCACGCCTT
ACGATGGTGGCGAAGTTGTCGAAAGGTTTTCCTTCGATGGACCGGATGTA
GTCAATCGCGTGTCAACGGTGCGTCGGTTTGGTGGCTTTAGCACAGCTAC
GTTTGCTACGGAAACGCGGGCAGGAAACGCTAGTGAAAAGGAAATCAAAG
ACCATCAGGGCAACGAGGAATTGGATGTTGCCGCTTTGTTAGATAAGATG
GCTTGCTTCGGTGTCACCGGAGGGGGTTCTCCGTTTGAAGTTCCGGAAAC
GGACAAGACGCAATTTGCAGGAGCGGGAAGATGGGGAACTACAAATTCAT
CCTCAAAACCATCGACGAACAGCGCCTTTGGTTCTGGTTTCACTTCAAGG
TCTACGAAAAACATGGCAGAAAAACCTTCGGTAAACAGCGCTTTTAGCTC
TGGTTTCGGCAACTCTTCCAATGGGACGACAAAAGAATCTCCTGAGAATA
TTCAAGGCCTTTCTAAGAAGTCTATAGATGCGGCCAGTGATTATGGAATC
GATCTTTCCAAAGTACCACCTAGTATGCGCCAAGATTTTGCTGCAAGTTT
TGACCCAGACGAGAAGAAATCCACATAG
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protein sequence of Ggra9217.t1

>Ggra9217.t1 ID=Ggra9217.t1|Name=Ggra9217.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=376bp
MAFVPHSTFLGRSKSVRSLRKDVSANTCTHRPYKFVASDKVPPSPPEVRV
NSNDAMQFFRHREGNWSSWRVTHHLAFRRSESGASEIQMQCLEKTDERIV
ALCKDWEVDPAKAQGGCYVTWLATMAWDQEGENHEGSTVFALVPDDDDIR
KGKMLRDRGYAEIVPIAGTYHLDEHDDLNLITPYDGGEVVERFSFDGPDV
VNRVSTVRRFGGFSTATFATETRAGNASEKEIKDHQGNEELDVAALLDKM
ACFGVTGGGSPFEVPETDKTQFAGAGRWGTTNSSSKPSTNSAFGSGFTSR
STKNMAEKPSVNSAFSSGFGNSSNGTTKESPENIQGLSKKSIDAASDYGI
DLSKVPPSMRQDFAASFDPDEKKST*
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mRNA from alignment at tig00000075_pilon:408980..410107+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9217.t1 ID=Ggra9217.t1|Name=Ggra9217.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1128bp|location=Sequence derived from alignment at tig00000075_pilon:408980..410107+ (Gracilaria gracilis GNS1m male)
ATGGCGTTTGTTCCGCACTCCACTTTCCTTGGTCGCTCCAAATCCGTTCG
CTCCCTGCGAAAAGATGTAAGCGCGAACACTTGTACACATCGCCCCTACA
AATTCGTTGCGTCCGACAAGGTTCCTCCTTCTCCTCCTGAAGTTCGAGTC
AATTCCAATGACGCAATGCAATTCTTTCGTCATCGCGAGGGGAACTGGAG
CTCATGGCGAGTTACGCATCATCTAGCCTTCCGCCGTTCAGAGTCTGGCG
CATCTGAAATTCAAATGCAATGTCTCGAGAAAACCGATGAACGTATTGTT
GCATTATGCAAAGACTGGGAAGTAGACCCTGCTAAAGCTCAAGGGGGATG
TTACGTCACGTGGTTAGCTACCATGGCTTGGGATCAAGAAGGGGAGAATC
ACGAAGGTTCCACAGTGTTTGCGCTGGTTCCAGACGATGATGACATTCGC
AAAGGCAAAATGCTACGCGATAGGGGATATGCTGAAATTGTACCCATCGC
AGGTACTTATCACCTTGACGAGCACGATGACCTAAACCTTATCACGCCTT
ACGATGGTGGCGAAGTTGTCGAAAGGTTTTCCTTCGATGGACCGGATGTA
GTCAATCGCGTGTCAACGGTGCGTCGGTTTGGTGGCTTTAGCACAGCTAC
GTTTGCTACGGAAACGCGGGCAGGAAACGCTAGTGAAAAGGAAATCAAAG
ACCATCAGGGCAACGAGGAATTGGATGTTGCCGCTTTGTTAGATAAGATG
GCTTGCTTCGGTGTCACCGGAGGGGGTTCTCCGTTTGAAGTTCCGGAAAC
GGACAAGACGCAATTTGCAGGAGCGGGAAGATGGGGAACTACAAATTCAT
CCTCAAAACCATCGACGAACAGCGCCTTTGGTTCTGGTTTCACTTCAAGG
TCTACGAAAAACATGGCAGAAAAACCTTCGGTAAACAGCGCTTTTAGCTC
TGGTTTCGGCAACTCTTCCAATGGGACGACAAAAGAATCTCCTGAGAATA
TTCAAGGCCTTTCTAAGAAGTCTATAGATGCGGCCAGTGATTATGGAATC
GATCTTTCCAAAGTACCACCTAGTATGCGCCAAGATTTTGCTGCAAGTTT
TGACCCAGACGAGAAGAAATCCACATAG
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Coding sequence (CDS) from alignment at tig00000075_pilon:408980..410107+

>Ggra9217.t1 ID=Ggra9217.t1|Name=Ggra9217.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1128bp|location=Sequence derived from alignment at tig00000075_pilon:408980..410107+ (Gracilaria gracilis GNS1m male)
ATGGCGTTTGTTCCGCACTCCACTTTCCTTGGTCGCTCCAAATCCGTTCG
CTCCCTGCGAAAAGATGTAAGCGCGAACACTTGTACACATCGCCCCTACA
AATTCGTTGCGTCCGACAAGGTTCCTCCTTCTCCTCCTGAAGTTCGAGTC
AATTCCAATGACGCAATGCAATTCTTTCGTCATCGCGAGGGGAACTGGAG
CTCATGGCGAGTTACGCATCATCTAGCCTTCCGCCGTTCAGAGTCTGGCG
CATCTGAAATTCAAATGCAATGTCTCGAGAAAACCGATGAACGTATTGTT
GCATTATGCAAAGACTGGGAAGTAGACCCTGCTAAAGCTCAAGGGGGATG
TTACGTCACGTGGTTAGCTACCATGGCTTGGGATCAAGAAGGGGAGAATC
ACGAAGGTTCCACAGTGTTTGCGCTGGTTCCAGACGATGATGACATTCGC
AAAGGCAAAATGCTACGCGATAGGGGATATGCTGAAATTGTACCCATCGC
AGGTACTTATCACCTTGACGAGCACGATGACCTAAACCTTATCACGCCTT
ACGATGGTGGCGAAGTTGTCGAAAGGTTTTCCTTCGATGGACCGGATGTA
GTCAATCGCGTGTCAACGGTGCGTCGGTTTGGTGGCTTTAGCACAGCTAC
GTTTGCTACGGAAACGCGGGCAGGAAACGCTAGTGAAAAGGAAATCAAAG
ACCATCAGGGCAACGAGGAATTGGATGTTGCCGCTTTGTTAGATAAGATG
GCTTGCTTCGGTGTCACCGGAGGGGGTTCTCCGTTTGAAGTTCCGGAAAC
GGACAAGACGCAATTTGCAGGAGCGGGAAGATGGGGAACTACAAATTCAT
CCTCAAAACCATCGACGAACAGCGCCTTTGGTTCTGGTTTCACTTCAAGG
TCTACGAAAAACATGGCAGAAAAACCTTCGGTAAACAGCGCTTTTAGCTC
TGGTTTCGGCAACTCTTCCAATGGGACGACAAAAGAATCTCCTGAGAATA
TTCAAGGCCTTTCTAAGAAGTCTATAGATGCGGCCAGTGATTATGGAATC
GATCTTTCCAAAGTACCACCTAGTATGCGCCAAGATTTTGCTGCAAGTTT
TGACCCAGACGAGAAGAAATCCACATAG
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