Ggra6473.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6473.t1
Unique NameGgra6473.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length106
Homology
BLAST of Ggra6473.t1 vs. uniprot
Match: A0A2V3IGY7 (NADH-u_ox-rdase domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IGY7_9FLOR)

HSP 1 Score: 166 bits (420), Expect = 1.770e-51
Identity = 75/104 (72.12%), Postives = 90/104 (86.54%), Query Frame = 0
Query:    1 MAHPINDPTFPVVDGDPSFGKVMSSLRARDWQNAALVTFVSIPFGYAAGRPLVMRPSMYMAGMLGATFGLFLGFQNSFARLTGYKDNAVEIAKYGPQTAMSESS 104
            MAHPINDP FPV+D DPSFGKVMS+ R  DWQNA L T +S+PFGYAAGRP++MRPSMYMAG++GA+FGLFLGFQNSFARLTGYK+NA E AK+  + ++S +S
Sbjct:    1 MAHPINDPKFPVIDRDPSFGKVMSAFRTSDWQNATLATVLSVPFGYAAGRPVLMRPSMYMAGIIGASFGLFLGFQNSFARLTGYKENAAEAAKFASEKSVSGTS 104          
BLAST of Ggra6473.t1 vs. uniprot
Match: R7Q7T4 (NADH-ubiquinone oxidoreductase n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q7T4_CHOCR)

HSP 1 Score: 142 bits (359), Expect = 2.610e-41
Identity = 66/104 (63.46%), Postives = 81/104 (77.88%), Query Frame = 0
Query:    1 MAHPINDPTFPVVDGDPSFGKVMSSLRARDWQNAALVTFVSIPFGYAAGRPLVMRPSMYMAGMLGATFGLFLGFQNSFARLTGYKDNAVEIAKYGPQTAMSESS 104
            M +PIN PT  V+  DPSFG+VMS+ RA DWQN AL T +S+PFGY AGRP+VMRPSMY A  +GA FGL LGFQ+SFARLTGYK+NA+E+AKY P  +   ++
Sbjct:   68 MTYPINPPTHQVITRDPSFGQVMSAFRAGDWQNLALATGISMPFGYWAGRPIVMRPSMYAAATIGALFGLSLGFQSSFARLTGYKENALEVAKYSPSQSAESTA 171          
BLAST of Ggra6473.t1 vs. uniprot
Match: A0A6V2QQX1 (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2QQX1_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 2.070e-14
Identity = 39/92 (42.39%), Postives = 55/92 (59.78%), Query Frame = 0
Query:    4 PINDPTFPVVDGDPSFGKVMSSLRARDWQNAALVTFVSIPFGYAAGRPLVMRPSMYMAGMLGATFGLFLGFQNSFARLTGYKDNAVEIAKYG 95
            P +DP FPVV+ DPS    ++SLR RD+     +T  S  +GY  G+PL    +   A  +G TF  F+  Q++ +RL GYK+N VE+ KYG
Sbjct:    2 PYSDPKFPVVNNDPSVDDCINSLRKRDYMALFGLTGASWGYGYMVGKPL-RGATASTAAAIGFTFASFVVLQDTRSRLLGYKENGVEVKKYG 92          
BLAST of Ggra6473.t1 vs. uniprot
Match: B8BVH7 (NADH-u_ox-rdase domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BVH7_THAPS)

HSP 1 Score: 61.2 bits (147), Expect = 8.990e-10
Identity = 37/93 (39.78%), Postives = 48/93 (51.61%), Query Frame = 0
Query:    4 PINDPTFPVVDGDPSFGKVMSSLRARDWQNAALVTFVSIPFGYAAGRPLVMR-PSMYMAGMLGATFGLFLGFQNSFARLTGYKDNAVEIAKYG 95
            P  DP F VV+  P   + + SLR  D+  A  +T  S  +GY  G+P  M   S  MA  LG T       QN  +RL GY++N VE+ KYG
Sbjct:    2 PYGDPKFTVVNPSPDVDQTLRSLRTSDYLLATFITSASWAYGYTMGKPTRMACASTAMA--LGMTAAGMAVLQNGRSRLRGYRENEVEVKKYG 92          
BLAST of Ggra6473.t1 vs. uniprot
Match: A0A0L0D2G3 (NADH-u_ox-rdase domain-containing protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0D2G3_THETB)

HSP 1 Score: 58.5 bits (140), Expect = 4.880e-9
Identity = 30/88 (34.09%), Postives = 52/88 (59.09%), Query Frame = 0
Query:   10 FPVVDGDPSFGKVMSSLRARDWQNAALVTFVSIPFGYAAGRPLVMRPSMYMAGMLGATFGLFLGFQNSFARLTGYKDNAVEIAKYGPQ 97
            +PVV+  P+  + +++    D    AL+T +S+PFG+A G+P+ M+ +M MAG +G   G    +QN+  RL G  +N  E+ ++  Q
Sbjct:   11 YPVVNAAPNVAETVANFSMGDVSKWALMTGLSLPFGWAIGKPIRMQ-TMVMAGSIGFVGGFMWAYQNAAGRLMGTFENKSEVKRHYSQ 97          
BLAST of Ggra6473.t1 vs. uniprot
Match: W4GMW3 (NADH-u_ox-rdase domain-containing protein n=2 Tax=Aphanomyces TaxID=100860 RepID=W4GMW3_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.110e-8
Identity = 33/79 (41.77%), Postives = 40/79 (50.63%), Query Frame = 0
Query:    8 PTFPVVDGDPSFGKVMSSLRARDWQNAALVTFVSIPFGYAAGRPLVMRPSMYMAGMLGATFGLFLGFQNSFARLTGYKD 86
            P FPV    PSF    S+    D+   A+ + VS   GY  GRP V  PS    G+LG   G    FQNS ARL G+K+
Sbjct:   11 PKFPVKMKYPSFNDTTSNFNFSDYATVAVFSVVSFGAGYVLGRP-VRVPSSVATGVLGTVGGYLYSFQNSAARLQGFKE 88          
BLAST of Ggra6473.t1 vs. uniprot
Match: A0A8H7VPA5 (Uncharacterized protein n=1 Tax=Mucor circinatus TaxID=2054153 RepID=A0A8H7VPA5_9FUNG)

HSP 1 Score: 57.0 bits (136), Expect = 7.210e-8
Identity = 35/92 (38.04%), Postives = 51/92 (55.43%), Query Frame = 0
Query:   10 FPVVDGDPSFGKVMSSLRARDWQNAALVTFVS--IPFGY------AAGRPLVMRPSMYMAGMLGATFGLFLGFQNSFARLTGYKDNAVEIAK 93
            FPV+D DPSFG+V+ + R  D+   A  T ++     G       AAGR L  R  + ++ + GA  G  L +QNS  R  G+K+NA+E+ K
Sbjct:   10 FPVIDTDPSFGRVVRNFRTTDYATLAASTAIAPAAVIGLEKFNPVAAGRSL--RIPIRLSVLFGAFGGFLLAYQNSSLRFWGWKENAIEVTK 99          
The following BLAST results are available for this feature:
BLAST of Ggra6473.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A2V3IGY71.770e-5172.12NADH-u_ox-rdase domain-containing protein n=1 Tax=... [more]
R7Q7T42.610e-4163.46NADH-ubiquinone oxidoreductase n=1 Tax=Chondrus cr... [more]
A0A6V2QQX12.070e-1442.39Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
B8BVH78.990e-1039.78NADH-u_ox-rdase domain-containing protein n=1 Tax=... [more]
A0A0L0D2G34.880e-934.09NADH-u_ox-rdase domain-containing protein n=1 Tax=... [more]
W4GMW31.110e-841.77NADH-u_ox-rdase domain-containing protein n=2 Tax=... [more]
A0A8H7VPA57.210e-838.04Uncharacterized protein n=1 Tax=Mucor circinatus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019721NADH-ubiquinone oxidoreductase, 21kDa subunit, N-terminalPFAMPF10785NADH-u_ox-rdasecoord: 8..85
e-value: 3.3E-18
score: 66.2
NoneNo IPR availablePANTHERPTHR34062OXIDOREDUCTASE 21 KDA SUBUNIT, PUTATIVE (AFU_ORTHOLOGUE AFUA_4G04750)-RELATEDcoord: 6..99
NoneNo IPR availablePANTHERPTHR34062:SF1OXIDOREDUCTASE 21 KDA SUBUNIT, PUTATIVE (AFU_ORTHOLOGUE AFUA_4G04750)-RELATEDcoord: 6..99
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 56..74
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 75..105
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 31..49
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 50..55
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..30
NoneNo IPR availableTMHMMTMhelixcoord: 52..74

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000074_piloncontigtig00000074_pilon:223807..224222 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6473.t1Ggra6473.t1Gracilaria gracilis GNS1m malemRNAtig00000074_pilon 223807..224222 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6473.t1 ID=Ggra6473.t1|Name=Ggra6473.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=106bp
MAHPINDPTFPVVDGDPSFGKVMSSLRARDWQNAALVTFVSIPFGYAAGR
PLVMRPSMYMAGMLGATFGLFLGFQNSFARLTGYKDNAVEIAKYGPQTAM
SESST*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019721NADH-UbQ_OxRdtase_su21_N