Ggra6494.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6494.t1
Unique NameGgra6494.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length672
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000074_piloncontigtig00000074_pilon:452101..454430 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704215.1
PFAMsABC2_membrane,ABC_tran
Max annot lvl2759|Eukaryota
GOsGO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0008150,GO:0015399,GO:0015405,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022804,GO:0022857,GO:0031224,GO:0042623,GO:0042626,GO:0042752,GO:0043492,GO:0044425,GO:0044464,GO:0050789,GO:0051179,GO:0051234,GO:0055085,GO:0065007,GO:0071944
Evalue4.2e-125
EggNOG OGsCOG1131@1|root,KOG0061@2759|Eukaryota
DescriptionATPase activity, coupled to transmembrane movement of substances
COG categoryV
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6494Ggra6494Gracilaria gracilis GNS1m malegenetig00000074_pilon 452101..454430 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6494.t1Ggra6494.t1Gracilaria gracilis GNS1m malepolypeptidetig00000074_pilon 452101..454430 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6494.t1.start1Ggra6494.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000074_pilon 452101..452103 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6494.t1.CDS1Ggra6494.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000074_pilon 452101..453642 +
Ggra6494.t1.CDS2Ggra6494.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000074_pilon 453747..454043 +
Ggra6494.t1.CDS3Ggra6494.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000074_pilon 454131..454148 +
Ggra6494.t1.CDS4Ggra6494.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000074_pilon 454272..454430 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6494.t1.exon1Ggra6494.t1.exon1Gracilaria gracilis GNS1m maleexontig00000074_pilon 452101..453642 +
Ggra6494.t1.exon2Ggra6494.t1.exon2Gracilaria gracilis GNS1m maleexontig00000074_pilon 453747..454043 +
Ggra6494.t1.exon3Ggra6494.t1.exon3Gracilaria gracilis GNS1m maleexontig00000074_pilon 454131..454148 +
Ggra6494.t1.exon4Ggra6494.t1.exon4Gracilaria gracilis GNS1m maleexontig00000074_pilon 454272..454430 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6494.t1.intron1Ggra6494.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000074_pilon 453643..453746 +
Ggra6494.t1.intron2Ggra6494.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000074_pilon 454044..454130 +
Ggra6494.t1.intron3Ggra6494.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000074_pilon 454149..454271 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6494.t1.stop1Ggra6494.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000074_pilon 454428..454430 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6494.t1 ID=Ggra6494.t1|Name=Ggra6494.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=672bp
MPSPSAPAPAVDVSFSNLCYHIPAEHTFRTRLGLEERSQPTQILHSVSGY
VGSSQSLAILGPSGSGKTTLLNLLAGRSNHPPSGGHILFGGKPRVARTKR
HIGYVMQDDVFFSNLTVRETLSFTAAIRVPHLSAAERDANVHHVLRRLRL
LNCQHTRIGDQQFDKGISGGERKRLNIANELLHNPSILLADECTSGLDSS
SAHTVIALLRELSLEGQTIIATIHQPSSNIFGMFDNVMFLAAGHVAYFGP
PGRVISYFESVGFPFPSQAYNPADFVLELVIDDELPDDSGELDSGSEKQI
FSKQQRVIHAWKTCAPDLMPALMNQSRMLARKRSRPQESVALSILNSDDP
SVESTEDDNSSSTSKPQESPLDQPSAPTTRLARIRRAITKRYYDVTWRHA
KYNTPNKYPTDWFTQVKVLAVRAIRQKRGSVIEPMYVIHVLAVTIMSLLF
WFQMKPVEATIEDRLGALSFMCIFFGFFSTFNALFAFPAEKQVLNKDRAS
GAYRLSAYYLAKSMMETPVDMLTPIFYSSGIYWVIGLNPKFHAFLLHLVV
LVLNVLVGQSIGLLVSALFMEVRQAQVLGSMWILSSMLISGYYIDPNNTP
TFVRPFRYLSFIKYSYEAMLSDSLSIVGNVAVLIAWVILLRLAGYFALKL
LHTDHKPKVAAWKSSKQRDVR*
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spliced messenger RNA

>Ggra6494.t1 ID=Ggra6494.t1|Name=Ggra6494.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2016bp|location=Sequence derived from alignment at tig00000074_pilon:452101..454430+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCATCACCTTCCGCACCTGCGCCAGCTGTGGATGTGTCTTTTTCCAA
TCTGTGCTACCACATTCCGGCTGAACATACATTCCGCACCAGACTTGGAC
TAGAAGAGCGTTCGCAGCCAACCCAGATTCTGCACTCCGTGTCCGGCTAT
GTGGGATCATCTCAATCTCTTGCTATACTGGGCCCGTCTGGTTCAGGCAA
GACCACTTTGCTAAATCTGCTGGCGGGGCGAAGTAATCATCCTCCAAGCG
GTGGCCACATCTTGTTTGGTGGCAAGCCAAGAGTGGCTCGCACGAAGCGC
CACATAGGCTACGTCATGCAGGATGATGTCTTCTTTTCCAACCTCACAGT
TCGCGAGACTCTTTCATTCACCGCTGCGATAAGGGTTCCGCATCTGTCAG
CTGCAGAGAGGGATGCAAACGTACATCATGTTTTGAGACGCTTGAGACTA
CTCAATTGCCAGCACACTCGCATTGGAGACCAGCAATTCGATAAGGGTAT
TTCTGGTGGTGAGAGGAAACGTTTGAACATAGCCAATGAGTTGCTTCACA
ATCCTTCCATCTTGTTGGCAGATGAATGTACGTCAGGCCTGGACTCAAGC
TCGGCGCATACTGTCATTGCCTTGTTGAGAGAACTCAGCCTTGAAGGACA
AACTATTATTGCCACCATTCACCAACCATCTAGCAATATCTTTGGTATGT
TTGACAATGTCATGTTCCTTGCGGCGGGTCACGTTGCGTACTTTGGGCCA
CCGGGCAGGGTTATCTCCTATTTTGAGTCGGTAGGCTTTCCATTTCCATC
ACAGGCGTACAACCCTGCCGATTTTGTCCTAGAACTCGTTATTGATGACG
AACTTCCAGATGATTCAGGGGAACTGGACAGTGGTTCTGAAAAGCAAATC
TTCTCAAAGCAACAACGTGTCATTCATGCTTGGAAAACATGTGCGCCAGA
TCTCATGCCCGCGCTTATGAACCAGTCTCGTATGCTTGCAAGGAAGAGGT
CAAGACCTCAGGAGAGCGTAGCGTTGTCAATACTCAATTCTGACGATCCA
TCAGTCGAGTCCACAGAAGACGACAATTCCTCATCCACATCAAAGCCACA
AGAGTCTCCGCTCGATCAGCCATCAGCCCCAACGACCAGACTCGCACGAA
TCAGACGAGCGATCACTAAACGCTACTATGATGTCACTTGGAGACACGCC
AAATACAACACTCCGAACAAGTATCCAACGGACTGGTTTACACAGGTCAA
AGTGCTTGCAGTGAGAGCTATTCGCCAGAAGCGAGGAAGCGTTATTGAAC
CAATGTATGTCATTCATGTTCTTGCTGTGACTATCATGTCCCTGCTCTTT
TGGTTCCAAATGAAACCGGTAGAAGCAACGATTGAAGATCGTTTGGGCGC
CTTGTCCTTCATGTGCATATTCTTCGGTTTCTTCTCAACGTTCAACGCAC
TGTTTGCTTTCCCGGCTGAGAAGCAGGTTCTCAACAAGGATCGTGCCTCT
GGTGCGTATCGCCTCAGTGCGTACTATCTTGCAAAGTCAATGATGGAAAC
TCCAGTGGACATGCTGACACCCATATTTTACTCCTCCGGTATATATTGGG
TTATTGGCTTGAATCCCAAGTTTCACGCGTTTTTGCTTCACCTGGTTGTC
CTGGTTCTCAACGTACTTGTAGGACAGAGCATTGGTTTGTTGGTGTCAGC
GTTGTTCATGGAAGTTAGACAAGCTCAGGTCCTTGGTTCCATGTGGATCC
TAAGTTCTATGCTTATTTCTGGGTACTATATCGACCCGAACAACACACCG
ACGttcgttagaccgtttcgttatctgagtttcattaagtactcatacga
ggccatgCTAAGTGATTCTCTTTCTATCGTCGGCAACGTAGCAGTTCTAA
TTGCGTGGGTAATTCTGCTACGGTTAGCTGGTTATTTCGCCTTGAAGTTA
CTGCATACGGATCACAAGCCCAAGGTGGCGGCGTGGAAGAGTTCGAAGCA
AAGAGACGTAAGATAA
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protein sequence of Ggra6494.t1

>Ggra6494.t1 ID=Ggra6494.t1|Name=Ggra6494.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=672bp
MPSPSAPAPAVDVSFSNLCYHIPAEHTFRTRLGLEERSQPTQILHSVSGY
VGSSQSLAILGPSGSGKTTLLNLLAGRSNHPPSGGHILFGGKPRVARTKR
HIGYVMQDDVFFSNLTVRETLSFTAAIRVPHLSAAERDANVHHVLRRLRL
LNCQHTRIGDQQFDKGISGGERKRLNIANELLHNPSILLADECTSGLDSS
SAHTVIALLRELSLEGQTIIATIHQPSSNIFGMFDNVMFLAAGHVAYFGP
PGRVISYFESVGFPFPSQAYNPADFVLELVIDDELPDDSGELDSGSEKQI
FSKQQRVIHAWKTCAPDLMPALMNQSRMLARKRSRPQESVALSILNSDDP
SVESTEDDNSSSTSKPQESPLDQPSAPTTRLARIRRAITKRYYDVTWRHA
KYNTPNKYPTDWFTQVKVLAVRAIRQKRGSVIEPMYVIHVLAVTIMSLLF
WFQMKPVEATIEDRLGALSFMCIFFGFFSTFNALFAFPAEKQVLNKDRAS
GAYRLSAYYLAKSMMETPVDMLTPIFYSSGIYWVIGLNPKFHAFLLHLVV
LVLNVLVGQSIGLLVSALFMEVRQAQVLGSMWILSSMLISGYYIDPNNTP
TFVRPFRYLSFIKYSYEAMLSDSLSIVGNVAVLIAWVILLRLAGYFALKL
LHTDHKPKVAAWKSSKQRDVR*
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mRNA from alignment at tig00000074_pilon:452101..454430+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6494.t1 ID=Ggra6494.t1|Name=Ggra6494.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2330bp|location=Sequence derived from alignment at tig00000074_pilon:452101..454430+ (Gracilaria gracilis GNS1m male)
ATGCCATCACCTTCCGCACCTGCGCCAGCTGTGGATGTGTCTTTTTCCAA
TCTGTGCTACCACATTCCGGCTGAACATACATTCCGCACCAGACTTGGAC
TAGAAGAGCGTTCGCAGCCAACCCAGATTCTGCACTCCGTGTCCGGCTAT
GTGGGATCATCTCAATCTCTTGCTATACTGGGCCCGTCTGGTTCAGGCAA
GACCACTTTGCTAAATCTGCTGGCGGGGCGAAGTAATCATCCTCCAAGCG
GTGGCCACATCTTGTTTGGTGGCAAGCCAAGAGTGGCTCGCACGAAGCGC
CACATAGGCTACGTCATGCAGGATGATGTCTTCTTTTCCAACCTCACAGT
TCGCGAGACTCTTTCATTCACCGCTGCGATAAGGGTTCCGCATCTGTCAG
CTGCAGAGAGGGATGCAAACGTACATCATGTTTTGAGACGCTTGAGACTA
CTCAATTGCCAGCACACTCGCATTGGAGACCAGCAATTCGATAAGGGTAT
TTCTGGTGGTGAGAGGAAACGTTTGAACATAGCCAATGAGTTGCTTCACA
ATCCTTCCATCTTGTTGGCAGATGAATGTACGTCAGGCCTGGACTCAAGC
TCGGCGCATACTGTCATTGCCTTGTTGAGAGAACTCAGCCTTGAAGGACA
AACTATTATTGCCACCATTCACCAACCATCTAGCAATATCTTTGGTATGT
TTGACAATGTCATGTTCCTTGCGGCGGGTCACGTTGCGTACTTTGGGCCA
CCGGGCAGGGTTATCTCCTATTTTGAGTCGGTAGGCTTTCCATTTCCATC
ACAGGCGTACAACCCTGCCGATTTTGTCCTAGAACTCGTTATTGATGACG
AACTTCCAGATGATTCAGGGGAACTGGACAGTGGTTCTGAAAAGCAAATC
TTCTCAAAGCAACAACGTGTCATTCATGCTTGGAAAACATGTGCGCCAGA
TCTCATGCCCGCGCTTATGAACCAGTCTCGTATGCTTGCAAGGAAGAGGT
CAAGACCTCAGGAGAGCGTAGCGTTGTCAATACTCAATTCTGACGATCCA
TCAGTCGAGTCCACAGAAGACGACAATTCCTCATCCACATCAAAGCCACA
AGAGTCTCCGCTCGATCAGCCATCAGCCCCAACGACCAGACTCGCACGAA
TCAGACGAGCGATCACTAAACGCTACTATGATGTCACTTGGAGACACGCC
AAATACAACACTCCGAACAAGTATCCAACGGACTGGTTTACACAGGTCAA
AGTGCTTGCAGTGAGAGCTATTCGCCAGAAGCGAGGAAGCGTTATTGAAC
CAATGTATGTCATTCATGTTCTTGCTGTGACTATCATGTCCCTGCTCTTT
TGGTTCCAAATGAAACCGGTAGAAGCAACGATTGAAGATCGTTTGGGCGC
CTTGTCCTTCATGTGCATATTCTTCGGTTTCTTCTCAACGTTCAACGCAC
TGTTTGCTTTCCCGGCTGAGAAGCAGGTTCTCAACAAGGATCGTGCCTCT
GGTGCGTATCGCCTCAGTGCGTACTATCTTGCAAAGTCAATGGTGCGTTT
TTTCTTCCCCGACGAAGATCCTTGATTCCGAGGGTTAAATCATCAGCAAT
TGCATTCATACTGACAGTGTTCTCATATTTACCTATTGATCAACAGATGG
AAACTCCAGTGGACATGCTGACACCCATATTTTACTCCTCCGGTATATAT
TGGGTTATTGGCTTGAATCCCAAGTTTCACGCGTTTTTGCTTCACCTGGT
TGTCCTGGTTCTCAACGTACTTGTAGGACAGAGCATTGGTTTGTTGGTGT
CAGCGTTGTTCATGGAAGTTAGACAAGCTCAGGTCCTTGGTTCCATGTGG
ATCCTAAGTTCTATGCTTATTTCTGGGTACTATATCGACCCGAACAACAC
ACCGACGttcgttagaccgtttcgttatctgagtttcattaaggtaagag
gggcacacgttcgttagtttcattcaacgatgtttttcctggattgtact
aacttcaaaccgattttgacgcttttgcagtactcatacgaggccatggt
gagaattgaagtgttgcctccaagacaattcgcttgcgttgaggaagggc
cgagtaccgtgtactcaaacaacggacaaaattgccctattcttggagac
gaccttatTCGGGGCGCCCAGCTAAGTGATTCTCTTTCTATCGTCGGCAA
CGTAGCAGTTCTAATTGCGTGGGTAATTCTGCTACGGTTAGCTGGTTATT
TCGCCTTGAAGTTACTGCATACGGATCACAAGCCCAAGGTGGCGGCGTGG
AAGAGTTCGAAGCAAAGAGACGTAAGATAA
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Coding sequence (CDS) from alignment at tig00000074_pilon:452101..454430+

>Ggra6494.t1 ID=Ggra6494.t1|Name=Ggra6494.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2016bp|location=Sequence derived from alignment at tig00000074_pilon:452101..454430+ (Gracilaria gracilis GNS1m male)
ATGCCATCACCTTCCGCACCTGCGCCAGCTGTGGATGTGTCTTTTTCCAA
TCTGTGCTACCACATTCCGGCTGAACATACATTCCGCACCAGACTTGGAC
TAGAAGAGCGTTCGCAGCCAACCCAGATTCTGCACTCCGTGTCCGGCTAT
GTGGGATCATCTCAATCTCTTGCTATACTGGGCCCGTCTGGTTCAGGCAA
GACCACTTTGCTAAATCTGCTGGCGGGGCGAAGTAATCATCCTCCAAGCG
GTGGCCACATCTTGTTTGGTGGCAAGCCAAGAGTGGCTCGCACGAAGCGC
CACATAGGCTACGTCATGCAGGATGATGTCTTCTTTTCCAACCTCACAGT
TCGCGAGACTCTTTCATTCACCGCTGCGATAAGGGTTCCGCATCTGTCAG
CTGCAGAGAGGGATGCAAACGTACATCATGTTTTGAGACGCTTGAGACTA
CTCAATTGCCAGCACACTCGCATTGGAGACCAGCAATTCGATAAGGGTAT
TTCTGGTGGTGAGAGGAAACGTTTGAACATAGCCAATGAGTTGCTTCACA
ATCCTTCCATCTTGTTGGCAGATGAATGTACGTCAGGCCTGGACTCAAGC
TCGGCGCATACTGTCATTGCCTTGTTGAGAGAACTCAGCCTTGAAGGACA
AACTATTATTGCCACCATTCACCAACCATCTAGCAATATCTTTGGTATGT
TTGACAATGTCATGTTCCTTGCGGCGGGTCACGTTGCGTACTTTGGGCCA
CCGGGCAGGGTTATCTCCTATTTTGAGTCGGTAGGCTTTCCATTTCCATC
ACAGGCGTACAACCCTGCCGATTTTGTCCTAGAACTCGTTATTGATGACG
AACTTCCAGATGATTCAGGGGAACTGGACAGTGGTTCTGAAAAGCAAATC
TTCTCAAAGCAACAACGTGTCATTCATGCTTGGAAAACATGTGCGCCAGA
TCTCATGCCCGCGCTTATGAACCAGTCTCGTATGCTTGCAAGGAAGAGGT
CAAGACCTCAGGAGAGCGTAGCGTTGTCAATACTCAATTCTGACGATCCA
TCAGTCGAGTCCACAGAAGACGACAATTCCTCATCCACATCAAAGCCACA
AGAGTCTCCGCTCGATCAGCCATCAGCCCCAACGACCAGACTCGCACGAA
TCAGACGAGCGATCACTAAACGCTACTATGATGTCACTTGGAGACACGCC
AAATACAACACTCCGAACAAGTATCCAACGGACTGGTTTACACAGGTCAA
AGTGCTTGCAGTGAGAGCTATTCGCCAGAAGCGAGGAAGCGTTATTGAAC
CAATGTATGTCATTCATGTTCTTGCTGTGACTATCATGTCCCTGCTCTTT
TGGTTCCAAATGAAACCGGTAGAAGCAACGATTGAAGATCGTTTGGGCGC
CTTGTCCTTCATGTGCATATTCTTCGGTTTCTTCTCAACGTTCAACGCAC
TGTTTGCTTTCCCGGCTGAGAAGCAGGTTCTCAACAAGGATCGTGCCTCT
GGTGCGTATCGCCTCAGTGCGTACTATCTTGCAAAGTCAATGATGGAAAC
TCCAGTGGACATGCTGACACCCATATTTTACTCCTCCGGTATATATTGGG
TTATTGGCTTGAATCCCAAGTTTCACGCGTTTTTGCTTCACCTGGTTGTC
CTGGTTCTCAACGTACTTGTAGGACAGAGCATTGGTTTGTTGGTGTCAGC
GTTGTTCATGGAAGTTAGACAAGCTCAGGTCCTTGGTTCCATGTGGATCC
TAAGTTCTATGCTTATTTCTGGGTACTATATCGACCCGAACAACACACCG
ACGttcgttagaccgtttcgttatctgagtttcattaagtactcatacga
ggccatgCTAAGTGATTCTCTTTCTATCGTCGGCAACGTAGCAGTTCTAA
TTGCGTGGGTAATTCTGCTACGGTTAGCTGGTTATTTCGCCTTGAAGTTA
CTGCATACGGATCACAAGCCCAAGGTGGCGGCGTGGAAGAGTTCGAAGCA
AAGAGACGTAAGATAA
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