Ggra6487.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6487.t1
Unique NameGgra6487.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length147
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000074_piloncontigtig00000074_pilon:361310..365307 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6487Ggra6487Gracilaria gracilis GNS1m malegenetig00000074_pilon 361310..365307 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6487.t1Ggra6487.t1Gracilaria gracilis GNS1m malepolypeptidetig00000074_pilon 361310..365307 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6487.t1.start1Ggra6487.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000074_pilon 361310..361312 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6487.t1.CDS1Ggra6487.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000074_pilon 361310..361522 +
Ggra6487.t1.CDS2Ggra6487.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000074_pilon 365080..365307 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6487.t1.exon1Ggra6487.t1.exon1Gracilaria gracilis GNS1m maleexontig00000074_pilon 361310..361522 +
Ggra6487.t1.exon2Ggra6487.t1.exon2Gracilaria gracilis GNS1m maleexontig00000074_pilon 365080..365307 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6487.t1.intron1Ggra6487.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000074_pilon 361523..365079 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6487.t1.stop1Ggra6487.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000074_pilon 365305..365307 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6487.t1 ID=Ggra6487.t1|Name=Ggra6487.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=147bp
MENAHTRLLQKEIHTSLQDENDVVDVENNGEVEAQQFRNPFHMKTLSHLP
LPPINSSKAIQVDMQACELASGSGKGMPLLPAATVVLPAAADHMLDADPR
VLTKLRALPDVPNRAVATAQNALPIKNNVSPQLNVALFATASPLLR*
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spliced messenger RNA

>Ggra6487.t1 ID=Ggra6487.t1|Name=Ggra6487.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=441bp|location=Sequence derived from alignment at tig00000074_pilon:361310..365307+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGAATGCACACACACGTTTACTTCAAAAAGAAATACATACTAGTCT
CCAAGATGAGAACGATGTTGTGGATGTGGAGAATAATGGCGAAGTTGAGG
CTCAGCAGTTTAGAAACCCTTTTCACATGAAGACCTTGTCACATCTACCC
CTACCACCAATCAACTCCTCGAAGGCTATTCAGGTTGATATGCAGGCTTG
CGAATTAGCATCAggGTCCGGAAAGGGCATGCCGCTGTTGCCAGCCGCCA
CTGTCGTGCTGCCAGCCGCCGCCGACCACATGCTCGATGCCGATCCACGC
GTTCTCACCAAGCTGCGAGCGCTACCTGATGTGCCCAACCGCGCAGTTGC
CACCGCTCAGAACGCGCTGCCGATCAAAAACAACGTGTCGCCGCAGCTGA
ATGTTGCTCTTTTTGCTACGGCGTCACCGTTGCTGCGCTAG
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protein sequence of Ggra6487.t1

>Ggra6487.t1 ID=Ggra6487.t1|Name=Ggra6487.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=147bp
MENAHTRLLQKEIHTSLQDENDVVDVENNGEVEAQQFRNPFHMKTLSHLP
LPPINSSKAIQVDMQACELASGSGKGMPLLPAATVVLPAAADHMLDADPR
VLTKLRALPDVPNRAVATAQNALPIKNNVSPQLNVALFATASPLLR*
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mRNA from alignment at tig00000074_pilon:361310..365307+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6487.t1 ID=Ggra6487.t1|Name=Ggra6487.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=3998bp|location=Sequence derived from alignment at tig00000074_pilon:361310..365307+ (Gracilaria gracilis GNS1m male)
ATGGAGAATGCACACACACGTTTACTTCAAAAAGAAATACATACTAGTCT
CCAAGATGAGAACGATGTTGTGGATGTGGAGAATAATGGCGAAGTTGAGG
CTCAGCAGTTTAGAAACCCTTTTCACATGAAGACCTTGTCACATCTACCC
CTACCACCAATCAACTCCTCGAAGGCTATTCAGGTTGATATGCAGGCTTG
CGAATTAGCATCAGTAGGCCAACCATTTCTCGTACACTCACCAACACGTT
GTTCTAAATGTAACAGTCGTAGACGAAAAAGCTCCAAGAAAATATGGAAC
GATGGAGTGCTTATGTGTACAAGAAGACCATGTCCTCTTCACGTAGAGGA
ATATGAATGCGGTAACCCAGGATGTCGCACAAAAATTCAACCAGAAGGGC
GAGAACAGTTTGATTTGCTTTCGAATATGTGCACTGCCGGACCTCATGCT
TTGTTACGACAGGAGTTAATCGGTGTTGTGATAGGTAATGGTACATTAAG
CAGTCGCTTAAAACAATTTCATTCACAAGTACAAGCCCTCCTGAATGCTG
GGTACTTTGCGTTGAACATTTCCGTTCCCTAAGATCAGTTCAAATCATGC
AGGATATGTATGTTTTAATGCTGAAGCTCATGACTCTGAAACCCGATCAA
AGGTTGTTTAGTGGCGACACCTGTGAAAATGGTGACGCACCTATTCCAGT
CATATGCATAGACGGGATTCACTAGGGTATATGAAAAGCAAGCTGGTTCT
CCTTAAGAACATTTCTCAAAAATGTGAACCACTTTCTAGGTCGATGGCCA
GATCCATGGGAAGCACATATCGTCCACTCATTTGACTCATACGGAAGGAA
ACAGTTGTGAAGATTTTTTTCAGCCTTGAAAGGAGATATTGGTACTTGTG
CCAGACTTAATGTGAAGGAGTTTGTCATATGTGTCCGAATTTTTTAAGAT
ACTGTTCTAACTCAAGGTTTCTTTAGCGAATCAATATGTGGGAATACTCT
AAATGAAACTTAAATGATATCGGTGAGTTTTATAGTTTATCCTCACTAAG
AATGCTTACAAACTCTCTTTTAGATCAATCCGTTCTAATACAACGATTTT
TAAACCCCGTTCATGAGTTCGTTTCTCATTTCGCAGAAGAAAGGCTGAAG
CTCCTTCACATTATTGGATCAGAACCTCGTTCTATCAAGACCATTATATC
ACATAAGCTGAATGTGTTGCGAAATGAATGTGGTCTACACAGCTCAGGGA
TACCATGGTTGAGTTAGGGCCCGTTCAGTTCCGAAAGAGAGAAAGGCCCT
CCAAAGGAGTTGTTCCGTATGTTTTTATGTTTCTGAAAGGCCCAATATGT
CAGTTTGTTCGTTCATCTGATCTTTCTTCAGTTCAAAGACTGGCAAATAC
ATGTCTCGACCACAATATACAAAAAAAGTGTGGTGGGTCTGCGAAACCCA
AAATATCTTCTGAATGGGGTTTAAGGAACGAGCATACTATCAAGTTCGAG
ATTGCTTCAAGCAGGATTGCCGACAATTGTAGAAATTGAACAACACAAGT
CCGAAGAAATGAGCAGAAGAATGCGGTCTGTGTTTGGTAACACACTCATT
AGCTGCCTTCAATGTGTACACAAGTTTTACAGATATTATAAATATCCAAT
ATGAAAAAGCCCCGCGTACTGGCATGCAAAAGAGTGGGGTACCAATGAGA
AGACCCACCTTTTAGAACGCATGCGTCTAAAGTACCCACATCTTGAAAAT
GGAAGGGTACGAAGCTTTGATGAAGCGTATTGTACAGGAAACTATTTTCC
TGGTCGTTATCAGGTTCGATCGTCGCCATTCAATAGAGAAGAATTGAAGA
ATTCGGACAGCGAACGGTTTGGTTTATGTGCAAAGAATTATTTACAAGCG
CAAAACAGCTTTGCTTCTGAGGCAATGACAATATTATGTGCATTTGCCAG
TCCTATAACTTTTGGAACCAAAGTTTTATATCGAAATGAAGCACCAAAAA
TTGTCTTAGATATGATTATATCCCGATTTGCTGAGATTCCAAGATTTCTG
GTTTATGATTTCTCTTGTGGTCTCTACAATGCATGTGTTCATTCCCTTTG
GTGGGCTTTGGAAGAAACCACTATTGTAAGTGACAAGTTCTACATTGGAA
ATCATAAAAATTGTTCCCCTAGCTTTGATCCGAGAGCATATTACGAACTC
GACAGCAAAAATACTTTGTCACAAGAGCAACGTAATAATAGAATAAGACT
TATTTCGACGTCTATTAGAAATGGTGGTCATCAGTACTACATTACATTGT
TAGCCTTTCAAGCAATAATTCAAAATATTAGGGCTAAGGCGCAGCTGACA
AAAATTTTCGGGAAAGAGAAAGTTTGGTTTCTGAACCCGACTTAGAGTGG
TGCTACTTTCACTGCTGGGGAATGAATTAAGAATGATCCGCATTCGCTCT
GATACTCATGGATTTATGTAGCGAGACATATATGTCCCGGCTCCTGGAAA
ATGGTAAAGCTTAAAATAATACTCGAGAAATACGTCAAACTTAACTGTTT
TCAGAAAAAAATGGTCATTCGCATTGCATTGCGTTAAAGTGTGATGTACT
GTTCTTTGTTTCTTGTCGTTTCTTAAACACATTTATTTGATGGTTTTCTT
CTGTTTTTTGCTTCTGCTTGTGCGTCTACGTGATAGTCCACGTCACTCGC
CGCCgtcacggctgcgcatgtcgttggtgctgcgcgcaccgacgccatca
acgctatgcagcccgcgctcagcctcacgcccgaacgctcgcacgctgcg
ctcttcatgcggcaccctaccgcagaacgcaccgcgcgttccatgctgtc
gtcgccgccgctgccgccaccacctctgccaccaccgcttcagtcgccgc
ttctgctgtcgcGCGTTTTGGCAGCGCGCCCGCCATGTCACCTGTTGGCT
GCCGGGGCCGTCACCCCAACTGCTGTgccgccgccaccgcttccgccacc
gccgcagcTGTTCGTGGCCACAGTGGTGGCAGCGGGCACATCTCGGGGGG
CCCTGTCACCTGCGCGAACGAGGAAGAACGCCAGTACGCTGTGACCGCCG
CCCAAGCCATTGCGCCGGCCTCGCCGATGACGCCGCATCATCTGTGCTCA
GCGCGATCGCTGTTCGCCGCGTCCACGCCCAACTCCACCACAccgccgtc
gccaccgccgccgccACTTCTTGCGCTCTTCGCCACAGCGTCGGGAAAGC
CGCGGCGCCACCGCCGCCCGTGCTCTTCAATACGGCGTCGGAAAAGCTGT
TGGCGCCGTCGACGCAGCCGATGTTCACCACGGGCTCGGGCAAGCCAGTG
CCGCCGCCATCAGGACCGCTGTTCACCATGGGCGCGGGCAAGCCCCTGCC
GCTTGCGCCGCCACCGTGCCCACCTGCCTTCAGCGAGCGGGGCCTGCGCA
AGCGCCCCATGtctctgttctcctccgcgtccccctacagacttcgaata
tggcccaaatatggccgagatatggccgaaatgtggccgtttccctcgaa
aagttgtgagaacgtttaaaaagcggagataaacaagtttcatttttctt
catatcgccaaaaatggcctaaatgtggcctaaatatggctgaagtgtac
acgtgtcagttggagaaagtacttattttccgtagttacacgttctctga
aaaattcgagctaaacggccatatttgggccatatttgggccatatttgg
gccatattcgaggtttatagggGTCCGGAAAGGGCATGCCGCTGTTGCCA
GCCGCCACTGTCGTGCTGCCAGCCGCCGCCGACCACATGCTCGATGCCGA
TCCACGCGTTCTCACCAAGCTGCGAGCGCTACCTGATGTGCCCAACCGCG
CAGTTGCCACCGCTCAGAACGCGCTGCCGATCAAAAACAACGTGTCGCCG
CAGCTGAATGTTGCTCTTTTTGCTACGGCGTCACCGTTGCTGCGCTAG
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Coding sequence (CDS) from alignment at tig00000074_pilon:361310..365307+

>Ggra6487.t1 ID=Ggra6487.t1|Name=Ggra6487.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=441bp|location=Sequence derived from alignment at tig00000074_pilon:361310..365307+ (Gracilaria gracilis GNS1m male)
ATGGAGAATGCACACACACGTTTACTTCAAAAAGAAATACATACTAGTCT
CCAAGATGAGAACGATGTTGTGGATGTGGAGAATAATGGCGAAGTTGAGG
CTCAGCAGTTTAGAAACCCTTTTCACATGAAGACCTTGTCACATCTACCC
CTACCACCAATCAACTCCTCGAAGGCTATTCAGGTTGATATGCAGGCTTG
CGAATTAGCATCAggGTCCGGAAAGGGCATGCCGCTGTTGCCAGCCGCCA
CTGTCGTGCTGCCAGCCGCCGCCGACCACATGCTCGATGCCGATCCACGC
GTTCTCACCAAGCTGCGAGCGCTACCTGATGTGCCCAACCGCGCAGTTGC
CACCGCTCAGAACGCGCTGCCGATCAAAAACAACGTGTCGCCGCAGCTGA
ATGTTGCTCTTTTTGCTACGGCGTCACCGTTGCTGCGCTAG
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