Ggra6446.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6446.t1
Unique NameGgra6446.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length267
Homology
BLAST of Ggra6446.t1 vs. uniprot
Match: A0A2V3J599 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J599_9FLOR)

HSP 1 Score: 261 bits (666), Expect = 6.750e-84
Identity = 135/250 (54.00%), Postives = 187/250 (74.80%), Query Frame = 0
Query:    8 TRSSKIKTYSVAGLLIVAGIAVLISYIDAALHSSLAKAGEQIGKSAWALAVFFDASFGAVFAVYYVFIRDGPSVFGVPARIFAFLWPFVTNFALVWYISYMIFVKKDLDLALFPYSDSSRPPEVPMRTQRHRVTSQIVMGVATIAVVIVCCLFAWALGQDTMRTALSVVISKQYKWITFTFIDSIAGLLFVAVFIVEREGGSTTTSVLWIVALFLIGNAVTFVYIILMAMDALRLDLPLSQVVLSIKKSL 257
            T  S IKTYS+A LL +A  AVL +Y  AAL +SL  A + I +S WA+ +FFDASFGAVFAVYY+F+R+GPSV  +PA++FAFLWPF++NFAL+WY++YMI + KDL  AL PYS +    +VPMRTQR+R T+QIV  +A+    ++  L   A+  ++  TA + ++S Q KWITFT+ DS+AGLLF A++I+EREGG + TSVLW VAL ++GNAVT VY+ LMA+ A+  D+P++ V+LS +K++
Sbjct:    7 TSPSLIKTYSIAALLFIASFAVLFAYTSAALETSLLNAPQDISQSGWAVVIFFDASFGAVFAVYYLFVRNGPSVACIPAKLFAFLWPFISNFALLWYVAYMILLHKDLRSALIPYSTAEANGQVPMRTQRNRRTAQIVASIASFLFFVIVVLDINAMRYESFSTAWTKLLSNQNKWITFTYADSLAGLLFTAIYIIEREGGPSPTSVLWAVALLVLGNAVTCVYVFLMALQAISEDVPITHVLLSSRKTI 256          
BLAST of Ggra6446.t1 vs. uniprot
Match: A0A2V3IJ70 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IJ70_9FLOR)

HSP 1 Score: 144 bits (362), Expect = 3.680e-38
Identity = 100/262 (38.17%), Postives = 146/262 (55.73%), Query Frame = 0
Query:   14 KTYSVAGLLIVAGIAVLISYIDAALHSSLAKAGEQIGKSAWALAVFFDASFGAVFAVYYVFIRDGPSVFGVPARIFAFLWPFVTNFALVWYISYMIFVKKDLDLALFPYS-DSSRPPEVPMR---TQRHRVTSQIVMGVATIAVVI----VCCLFAWALGQDTMRTALSVVISKQYKWITFTFIDSIAGLLFVAVFIVEREGGSTTTSVLWIVALFLIGNAVTFVYIILMAMDALRLDLPLSQVVLSIKKS------LESGP 261
            + Y  A  L   G+A+ +S +     S L++    IG+S WAL+   D   GA FA  YVF+RDGP VF +  ++FA ++PFV NFAL+WY++Y+I   KD+   L P + ++    E+ MR   TQ+H  T    +GVA  A+++    VC    WA  + +++    V+  K  KW  FTFID++ G+LF  VFI+ REG     + LWI+ L   GN  T +Y+I +A  A   D+  S+V+LS  KS      LE GP
Sbjct:   13 QAYIFAAFLTTVGVALFMSLVQTIRKSPLSEGISGIGESPWALSALADYFVGACFAALYVFLRDGPPVFCLSNKVFAVVFPFVGNFALLWYVAYLIVKAKDVTRGLLPQTVETPGNVEIDMRSSSTQKHPKT----IGVAFFALLLWFAAVC---FWASQRQSLQEGYRVL--KMVKWAGFTFIDNLTGILFTVVFIIVREGEVNCITSLWILGLVFFGNGPTCLYVIHVAQQAFSRDVSFSRVLLSRSKSVSVHSVLEDGP 265          
The following BLAST results are available for this feature:
BLAST of Ggra6446.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3J5996.750e-8454.00Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IJ703.680e-3838.17Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 15..34
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 54..74
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 144..163
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 183..203
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 111..143
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 86..110
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 238..266
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 204..214
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 75..85
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 215..237
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 164..182
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..14
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 35..53
NoneNo IPR availableTMHMMTMhelixcoord: 88..110
NoneNo IPR availableTMHMMTMhelixcoord: 16..38
NoneNo IPR availableTMHMMTMhelixcoord: 142..164
NoneNo IPR availableTMHMMTMhelixcoord: 213..235
NoneNo IPR availableTMHMMTMhelixcoord: 184..203
NoneNo IPR availableTMHMMTMhelixcoord: 53..75

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000074_piloncontigtig00000074_pilon:66010..66810 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6446.t1Ggra6446.t1Gracilaria gracilis GNS1m malemRNAtig00000074_pilon 66010..66810 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6446.t1 ID=Ggra6446.t1|Name=Ggra6446.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=267bp
MEPTPPTTRSSKIKTYSVAGLLIVAGIAVLISYIDAALHSSLAKAGEQIG
KSAWALAVFFDASFGAVFAVYYVFIRDGPSVFGVPARIFAFLWPFVTNFA
LVWYISYMIFVKKDLDLALFPYSDSSRPPEVPMRTQRHRVTSQIVMGVAT
IAVVIVCCLFAWALGQDTMRTALSVVISKQYKWITFTFIDSIAGLLFVAV
FIVEREGGSTTTSVLWIVALFLIGNAVTFVYIILMAMDALRLDLPLSQVV
LSIKKSLESGPIDMDM*
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