Ggra6463.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6463.t1
Unique Name	Ggra6463.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	328

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000074_pilon	contig	tig00000074_pilon:185868..186851 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	266117.Rxyl_2848
PFAMs	AA_kinase
Max annot lvl	84995\|Rubrobacteria
KEGG rclass	RC00002,RC00043,RC02803,RC02804
KEGG ko	ko:K00926
KEGG Reaction	R00150,R01395
KEGG Pathway	ko00220,ko00230,ko00910,ko01100,ko01120,ko01200,map00220,map00230,map00910,map01100,map01120,map01200
Evalue	1.53e-133
EggNOG OGs	COG0549@1\|root,COG0549@2\|Bacteria,2HWQ6@201174\|Actinobacteria,4CQAT@84995\|Rubrobacteria
EC	2.7.2.2
Description	Amino acid kinase family
COG category	E
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6463	Ggra6463	Gracilaria gracilis GNS1m male	gene	tig00000074_pilon 185868..186851 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6463.t1.start1	Ggra6463.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000074_pilon 185868..185870 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6463.t1.CDS1	Ggra6463.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000074_pilon 185868..186851 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6463.t1.exon1	Ggra6463.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000074_pilon 185868..186851 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6463.t1.stop1	Ggra6463.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000074_pilon 186849..186851 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6463.t1	Ggra6463.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000074_pilon 185868..186851 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000074_pilon:185868..186851+
coding sequence from alignment at tig00000074_pilon:185868..186851+

mRNA sequence

>Ggra6463.t1 ID=Ggra6463.t1|Name=Ggra6463.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=328bp
MLPTFLSRPRTKPQITIGVAVVAVGGNALIKDKNKQTMQDQYAAARDTAA
HVAAMIQAGWNVILTHGNGPQVGFNMRRSELAAHELHPVPLDYCDADTQG
TIGYMFQRAMRNEFKHRGMDKVVATVVTLVRVCADDPAFQNPTKPIGSFL
DKKTAQEHRKEGKIIVEDAGRGWRRVVPSPLPVEIIEAKAIKTLIKAGAV
VIATGGGGIPVVENEVGDLVGIEAVIDKDLTSALLANVMGVDLLLVCTAV
EKVALNFNTPDELWLDKMTVAEAKKYVKEGHFAPGSMKPKIEACIKFLEN
GGKQVLITDPKNIPRALRGQTGTLIVP*

spliced messenger RNA

>Ggra6463.t1 ID=Ggra6463.t1|Name=Ggra6463.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=984bp|location=Sequence derived from alignment at tig00000074_pilon:185868..186851+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTACCAACCTTCTTAAGTCGACCAAGGACAAAGCCGCAGATAACAAT
CGGCGTTGCTGTCGTCGCAGTCGGTGGCAATGCGCTCATCAAGGACAAGA
ACAAGCAAACCATGCAAGACCAATACGCAGCCGCTCGCGATACGGCTGCT
CATGTCGCCGCCATGATCCAAGCTGGCTGGAACGTGATCCTCACGCATGG
TAATGGTCCGCAGGTGGGCTTCAACATGCGCCGTTCTGAGTTGGCGGCCC
ATGAGCTACATCCTGTGCCACTGGACTACTGCGACGCCGACACACAGGGC
ACCATTGGCTACATGTTCCAACGTGCCATGCGCAACGAGTTCAAACATCG
TGGCATGGACAAAGTAGTTGCCACAGTGGTAACGTTGGTGCGTGTCTGCG
CGGATGATCCCGCCTTTCAGAATCCTACCAAGCCCATCGGCTCCTTTCTG
GATAAGAAGACTGCCCAAGAACACAGAAAAGAGGGCAAGATCATAGTTGA
AGATGCAGGTCGTGGTTGGCGTCGGGTGGTGCCCTCCCCTTTACCTGTAG
AGATAATCGAAGCGAAAGCCATAAAAACCTTAATCAAAGCAGGTGCGGTA
GTCATCGCTACTGGAGGGGGAGGCATCCCAGTTGTAGAGAACGAAGTAGG
TGACCTGGTCGGCATTGAAGCGGTCATCGACAAGGACTTAACGTCCGCGT
TGCTGGCGAATGTCATGGGTGTGGACTTGCTGCTGGTCTGCACCGCCGTG
GAAAAGGTTGCCCTCAATTTCAACACACCTGATGAGCTGTGGCTCGATAA
GATGACCGTCGCGGAGGCCAAGAAATACGTAAAGGAAGGACACTTTGCCC
CGGGGAGCATGAAGCCCAAAATCGAGGCTTGCATCAAGTTCCTCGAGAAC
GGCGGTAAGCAGGTTCTAATTACCGATCCGAAGAATATACCCCGGGCGCT
TAGAGGCCAAACCGGGACTTTGATCGTACCTTAA

protein sequence of Ggra6463.t1

>Ggra6463.t1 ID=Ggra6463.t1|Name=Ggra6463.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=328bp
MLPTFLSRPRTKPQITIGVAVVAVGGNALIKDKNKQTMQDQYAAARDTAA
HVAAMIQAGWNVILTHGNGPQVGFNMRRSELAAHELHPVPLDYCDADTQG
TIGYMFQRAMRNEFKHRGMDKVVATVVTLVRVCADDPAFQNPTKPIGSFL
DKKTAQEHRKEGKIIVEDAGRGWRRVVPSPLPVEIIEAKAIKTLIKAGAV
VIATGGGGIPVVENEVGDLVGIEAVIDKDLTSALLANVMGVDLLLVCTAV
EKVALNFNTPDELWLDKMTVAEAKKYVKEGHFAPGSMKPKIEACIKFLEN
GGKQVLITDPKNIPRALRGQTGTLIVP*

mRNA from alignment at tig00000074_pilon:185868..186851+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6463.t1 ID=Ggra6463.t1|Name=Ggra6463.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=984bp|location=Sequence derived from alignment at tig00000074_pilon:185868..186851+ (Gracilaria gracilis GNS1m male)
ATGTTACCAACCTTCTTAAGTCGACCAAGGACAAAGCCGCAGATAACAAT
CGGCGTTGCTGTCGTCGCAGTCGGTGGCAATGCGCTCATCAAGGACAAGA
ACAAGCAAACCATGCAAGACCAATACGCAGCCGCTCGCGATACGGCTGCT
CATGTCGCCGCCATGATCCAAGCTGGCTGGAACGTGATCCTCACGCATGG
TAATGGTCCGCAGGTGGGCTTCAACATGCGCCGTTCTGAGTTGGCGGCCC
ATGAGCTACATCCTGTGCCACTGGACTACTGCGACGCCGACACACAGGGC
ACCATTGGCTACATGTTCCAACGTGCCATGCGCAACGAGTTCAAACATCG
TGGCATGGACAAAGTAGTTGCCACAGTGGTAACGTTGGTGCGTGTCTGCG
CGGATGATCCCGCCTTTCAGAATCCTACCAAGCCCATCGGCTCCTTTCTG
GATAAGAAGACTGCCCAAGAACACAGAAAAGAGGGCAAGATCATAGTTGA
AGATGCAGGTCGTGGTTGGCGTCGGGTGGTGCCCTCCCCTTTACCTGTAG
AGATAATCGAAGCGAAAGCCATAAAAACCTTAATCAAAGCAGGTGCGGTA
GTCATCGCTACTGGAGGGGGAGGCATCCCAGTTGTAGAGAACGAAGTAGG
TGACCTGGTCGGCATTGAAGCGGTCATCGACAAGGACTTAACGTCCGCGT
TGCTGGCGAATGTCATGGGTGTGGACTTGCTGCTGGTCTGCACCGCCGTG
GAAAAGGTTGCCCTCAATTTCAACACACCTGATGAGCTGTGGCTCGATAA
GATGACCGTCGCGGAGGCCAAGAAATACGTAAAGGAAGGACACTTTGCCC
CGGGGAGCATGAAGCCCAAAATCGAGGCTTGCATCAAGTTCCTCGAGAAC
GGCGGTAAGCAGGTTCTAATTACCGATCCGAAGAATATACCCCGGGCGCT
TAGAGGCCAAACCGGGACTTTGATCGTACCTTAA

Coding sequence (CDS) from alignment at tig00000074_pilon:185868..186851+

>Ggra6463.t1 ID=Ggra6463.t1|Name=Ggra6463.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=984bp|location=Sequence derived from alignment at tig00000074_pilon:185868..186851+ (Gracilaria gracilis GNS1m male)
ATGTTACCAACCTTCTTAAGTCGACCAAGGACAAAGCCGCAGATAACAAT
CGGCGTTGCTGTCGTCGCAGTCGGTGGCAATGCGCTCATCAAGGACAAGA
ACAAGCAAACCATGCAAGACCAATACGCAGCCGCTCGCGATACGGCTGCT
CATGTCGCCGCCATGATCCAAGCTGGCTGGAACGTGATCCTCACGCATGG
TAATGGTCCGCAGGTGGGCTTCAACATGCGCCGTTCTGAGTTGGCGGCCC
ATGAGCTACATCCTGTGCCACTGGACTACTGCGACGCCGACACACAGGGC
ACCATTGGCTACATGTTCCAACGTGCCATGCGCAACGAGTTCAAACATCG
TGGCATGGACAAAGTAGTTGCCACAGTGGTAACGTTGGTGCGTGTCTGCG
CGGATGATCCCGCCTTTCAGAATCCTACCAAGCCCATCGGCTCCTTTCTG
GATAAGAAGACTGCCCAAGAACACAGAAAAGAGGGCAAGATCATAGTTGA
AGATGCAGGTCGTGGTTGGCGTCGGGTGGTGCCCTCCCCTTTACCTGTAG
AGATAATCGAAGCGAAAGCCATAAAAACCTTAATCAAAGCAGGTGCGGTA
GTCATCGCTACTGGAGGGGGAGGCATCCCAGTTGTAGAGAACGAAGTAGG
TGACCTGGTCGGCATTGAAGCGGTCATCGACAAGGACTTAACGTCCGCGT
TGCTGGCGAATGTCATGGGTGTGGACTTGCTGCTGGTCTGCACCGCCGTG
GAAAAGGTTGCCCTCAATTTCAACACACCTGATGAGCTGTGGCTCGATAA
GATGACCGTCGCGGAGGCCAAGAAATACGTAAAGGAAGGACACTTTGCCC
CGGGGAGCATGAAGCCCAAAATCGAGGCTTGCATCAAGTTCCTCGAGAAC
GGCGGTAAGCAGGTTCTAATTACCGATCCGAAGAATATACCCCGGGCGCT
TAGAGGCCAAACCGGGACTTTGATCGTACCTTAA