Ggra6468.t2 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6468.t2
Unique NameGgra6468.t2
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length492
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000074_piloncontigtig00000074_pilon:204863..206709 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708613.1
PFAMsTPT
Max annot lvl2759|Eukaryota
KEGG koko:K15280
KEGG TC2.A.7
Evalue1.4e-34
EggNOG OGsCOG0697@1|root,KOG1443@2759|Eukaryota
DescriptionUDP-glucose transmembrane transport
COG categoryEG
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6468Ggra6468Gracilaria gracilis GNS1m malegenetig00000074_pilon 204863..208529 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6468.t2Ggra6468.t2Gracilaria gracilis GNS1m malepolypeptidetig00000074_pilon 204863..206709 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6468.t2.stop1Ggra6468.t2.stop1Gracilaria gracilis GNS1m malestop_codontig00000074_pilon 204863..204865 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6468.t2.CDS1Ggra6468.t2.CDS1Gracilaria gracilis GNS1m maleCDStig00000074_pilon 204863..205960 -
Ggra6468.t2.CDS2Ggra6468.t2.CDS2Gracilaria gracilis GNS1m maleCDStig00000074_pilon 206228..206270 -
Ggra6468.t2.CDS3Ggra6468.t2.CDS3Gracilaria gracilis GNS1m maleCDStig00000074_pilon 206375..206709 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6468.t2.exon1Ggra6468.t2.exon1Gracilaria gracilis GNS1m maleexontig00000074_pilon 204863..205960 -
Ggra6468.t2.exon2Ggra6468.t2.exon2Gracilaria gracilis GNS1m maleexontig00000074_pilon 206228..206270 -
Ggra6468.t2.exon3Ggra6468.t2.exon3Gracilaria gracilis GNS1m maleexontig00000074_pilon 206375..206709 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6468.t2.intron1Ggra6468.t2.intron1Gracilaria gracilis GNS1m maleintrontig00000074_pilon 205961..206227 -
Ggra6468.t2.intron2Ggra6468.t2.intron2Gracilaria gracilis GNS1m maleintrontig00000074_pilon 206271..206374 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6468.t2.start1Ggra6468.t2.start1Gracilaria gracilis GNS1m malestart_codontig00000074_pilon 206707..206709 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6468.t2 ID=Ggra6468.t2|Name=Ggra6468.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=492bp
MLIRKWLVAACALAGCDLSLRMAPQFGRAKSTRRFSERSRPVTWTSRPES
PLRLSYKLCTTEVTEPSCCARALGPASRFIAKLLVLGPKQRPRSTRRCGL
LIVVRFVQVHTPEGYHSFLGLNLNHSPDMPSTLYRPHLSPDMRTSLRVAR
VALLIFLWFSSSSLAVLTAKALFSGISEHIPPFPFALTLTATNNVIASLA
SCLFSNRALHASSDEGATRIAFTIGAATAAEIGLSNIALNLLTLSFSTVL
KGMAPFFVLGWGIVLRVHTLRLGIAASLCAMALGLILAVAGEHKNTDPAL
SHFLRIGLLAQLLSALCSGFRWVLTQVFIKGETVLDQRISNLLKCRSSSK
GWSAIETVRRVSPFTLLWVLPFVVLVEGFKLFGWFQNASFLQIAKLLVVL
STIGVSVFVLLWSEYELVRITSSLTVSVTFVLKEVLVIFAGALIFSERLS
WLTCIGFAIVQGGILAYVSQRNRDFGKKTASPEQLLGFESP*
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spliced messenger RNA

>Ggra6468.t2 ID=Ggra6468.t2|Name=Ggra6468.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1476bp|location=Sequence derived from alignment at tig00000074_pilon:204863..206709- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTATCCGAAAGTGGTTGGTCGCCGCCTGTGCGCTGGCGGGGTGTGA
TTTGTCGCTTCGAATGGCTCCTCAATTCGGCCGCGCGAAAAGCACTCGAC
GCTTCAGCGAGCGGTCGCGCCCCGTGACGTGGACGTCTCGTCCAGAATCT
CCGCTGCGGCTAAGTTATAAACTTTGTACTACAGAGGTTACCGAGCCTTC
ATGTTGTGCGCGCGCTTTAGGTCCTGCATCCCGTTTCATCGCCAAGCTTT
TGGTCCTCGGTCCTAAGCAGCGGCCCCGGAGCACTCGGCGCTGCGGCCTT
CTCATCGTCGTCCGCTTTGTCCAAGTGCACACCCCAGAGGGATACCACTC
GTTCCTCGGCCTCAATCTGAACCACTCGCCAGATATGCCCTCAACCCTTT
ATCGACCCCATCTGTCGCCCGATATGCGCACAAGCTTGCGGGTAGCGCGG
GTTGCGCTCCTAATTTTTCTTTGGTTTTCCTCTTCGTCCCTGGCTGTGCT
AACTGCCAAGGCGCTTTTCTCTGGAATTAGTGAACATATCCCACCGTTTC
CTTTTGCCTTGACCCTCACAGCTACCAATAACGTGATCGCTTCCCTCGCA
TCCTGTCTGTTCTCCAATCGTGCTCTACATGCCTCCAGTGATGAAGGTGC
AACCCGCATTGCATTCACCATCGGTGCCGCAACCGCCGCGGAGATCGGAC
TGTCCAACATTGCCCTCAATCTTTTGACACTCTCCTTCTCTACTGTGCTC
AAAGGAATGGCTCCGTTTTTCGTTCTTGGATGGGGCATTGTGCTGCGCGT
CCATACCTTACGTCTTGGTATAGCCGCTTCACTTTGTGCCATGGCCTTAG
GTCTCATCCTTGCTGTGGCAGGCGAGCATAAAAACACCGACCCTGCCCTT
TCGCACTTTTTGCGAATTGGCCTTCTTGCCCAGCTTCTTTCAGCGCTGTG
TTCGGGCTTTCGTTGGGTTCTCACGCAAGTATTTATTAAAGGTGAAACCG
TTCTTGACCAAAGAATCAGCAACTTGTTGAAGTGTCGATCGAGTTCCAAG
GGCTGGTCTGCTATCGAAACTGTACGACGAGTTTCGCCTTTCACCCTTTT
GTGGGTGTTACCTTTCGTTGTTCTGGTAGAAGGATTCAAGCTCTTTGGTT
GGTTTCAGAATGCGTCATTTCTACAAATTGCCAAACTTCTTGTTGTTTTG
TCAACCATTGGTGTTTCAGTGTTTGTGCTTCTCTGGTCCGAGTATGAGCT
GGTGAGGATCACTTCGTCATTAACAGTGTCAGTGACTTTCGTTCTCAAAG
AGGTTCTTGTAATATTTGCTGGCGCGTTGATCTTTAGTGAGCGCCTTTCA
TGGCTAACATGTATCGGATTTGCTATAGTGCAGGGAGGCATACTAGCTTA
TGTATCACAACGCAATCGGGATTTTGGAAAGAAAACGGCGTCTCCGGAAC
AACTTCTTGGTTTTGAGTCCCCATAA
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protein sequence of Ggra6468.t2

>Ggra6468.t2 ID=Ggra6468.t2|Name=Ggra6468.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=492bp
MLIRKWLVAACALAGCDLSLRMAPQFGRAKSTRRFSERSRPVTWTSRPES
PLRLSYKLCTTEVTEPSCCARALGPASRFIAKLLVLGPKQRPRSTRRCGL
LIVVRFVQVHTPEGYHSFLGLNLNHSPDMPSTLYRPHLSPDMRTSLRVAR
VALLIFLWFSSSSLAVLTAKALFSGISEHIPPFPFALTLTATNNVIASLA
SCLFSNRALHASSDEGATRIAFTIGAATAAEIGLSNIALNLLTLSFSTVL
KGMAPFFVLGWGIVLRVHTLRLGIAASLCAMALGLILAVAGEHKNTDPAL
SHFLRIGLLAQLLSALCSGFRWVLTQVFIKGETVLDQRISNLLKCRSSSK
GWSAIETVRRVSPFTLLWVLPFVVLVEGFKLFGWFQNASFLQIAKLLVVL
STIGVSVFVLLWSEYELVRITSSLTVSVTFVLKEVLVIFAGALIFSERLS
WLTCIGFAIVQGGILAYVSQRNRDFGKKTASPEQLLGFESP*
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mRNA from alignment at tig00000074_pilon:204863..206709-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6468.t2 ID=Ggra6468.t2|Name=Ggra6468.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1847bp|location=Sequence derived from alignment at tig00000074_pilon:204863..206709- (Gracilaria gracilis GNS1m male)
ATGCTTATCCGAAAGTGGTTGGTCGCCGCCTGTGCGCTGGCGGGGTGTGA
TTTGTCGCTTCGAATGGCTCCTCAATTCGGCCGCGCGAAAAGCACTCGAC
GCTTCAGCGAGCGGTCGCGCCCCGTGACGTGGACGTCTCGTCCAGAATCT
CCGCTGCGGCTAAGTTATAAACTTTGTACTACAGAGGTTACCGAGCCTTC
ATGTTGTGCGCGCGCTTTAGGTCCTGCATCCCGTTTCATCGCCAAGCTTT
TGGTCCTCGGTCCTAAGCAGCGGCCCCGGAGCACTCGGCGCTGCGGCCTT
CTCATCGTCGTCCGCTTTGTCCAAGTGCACACCCCGTCGGTGGTGCCGGC
TTTCACATCACCCCCACATCTCCCGCCACTGGCGCGCCGTCCGCGGCGAA
CATGGCCACGCTTTGCCGCCCACCATGAGCGATCCGTAGAGAGGGATACC
ACTCGTTCCTCGGCCTCAATCTGAACCACTCGGTACGTCAACACCTCATT
CGCTCGTGCTCACCGCACAGCTGTCAAGATGGGATGAACGCCATAACCTT
TTTTAAAACGACTTCTTCTTCCTATGAATACGCATTGCTTCGTTTCATAC
GTCGCTTGCGCATATGTTTCGATCTACGGTTATGATGCTGATCTGCAGCG
CCGCAAAATTACAACTCCAACTTTGCTGACATTGTTCTCTCTCGTCCTCT
CCCCTCATTCATGCCTTCTTGCTCCATCGACACACCTACCTCAACGAAGC
CAGATATGCCCTCAACCCTTTATCGACCCCATCTGTCGCCCGATATGCGC
ACAAGCTTGCGGGTAGCGCGGGTTGCGCTCCTAATTTTTCTTTGGTTTTC
CTCTTCGTCCCTGGCTGTGCTAACTGCCAAGGCGCTTTTCTCTGGAATTA
GTGAACATATCCCACCGTTTCCTTTTGCCTTGACCCTCACAGCTACCAAT
AACGTGATCGCTTCCCTCGCATCCTGTCTGTTCTCCAATCGTGCTCTACA
TGCCTCCAGTGATGAAGGTGCAACCCGCATTGCATTCACCATCGGTGCCG
CAACCGCCGCGGAGATCGGACTGTCCAACATTGCCCTCAATCTTTTGACA
CTCTCCTTCTCTACTGTGCTCAAAGGAATGGCTCCGTTTTTCGTTCTTGG
ATGGGGCATTGTGCTGCGCGTCCATACCTTACGTCTTGGTATAGCCGCTT
CACTTTGTGCCATGGCCTTAGGTCTCATCCTTGCTGTGGCAGGCGAGCAT
AAAAACACCGACCCTGCCCTTTCGCACTTTTTGCGAATTGGCCTTCTTGC
CCAGCTTCTTTCAGCGCTGTGTTCGGGCTTTCGTTGGGTTCTCACGCAAG
TATTTATTAAAGGTGAAACCGTTCTTGACCAAAGAATCAGCAACTTGTTG
AAGTGTCGATCGAGTTCCAAGGGCTGGTCTGCTATCGAAACTGTACGACG
AGTTTCGCCTTTCACCCTTTTGTGGGTGTTACCTTTCGTTGTTCTGGTAG
AAGGATTCAAGCTCTTTGGTTGGTTTCAGAATGCGTCATTTCTACAAATT
GCCAAACTTCTTGTTGTTTTGTCAACCATTGGTGTTTCAGTGTTTGTGCT
TCTCTGGTCCGAGTATGAGCTGGTGAGGATCACTTCGTCATTAACAGTGT
CAGTGACTTTCGTTCTCAAAGAGGTTCTTGTAATATTTGCTGGCGCGTTG
ATCTTTAGTGAGCGCCTTTCATGGCTAACATGTATCGGATTTGCTATAGT
GCAGGGAGGCATACTAGCTTATGTATCACAACGCAATCGGGATTTTGGAA
AGAAAACGGCGTCTCCGGAACAACTTCTTGGTTTTGAGTCCCCATAA
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Coding sequence (CDS) from alignment at tig00000074_pilon:204863..206709-

>Ggra6468.t2 ID=Ggra6468.t2|Name=Ggra6468.t2|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1476bp|location=Sequence derived from alignment at tig00000074_pilon:204863..206709- (Gracilaria gracilis GNS1m male)
ATGCTTATCCGAAAGTGGTTGGTCGCCGCCTGTGCGCTGGCGGGGTGTGA
TTTGTCGCTTCGAATGGCTCCTCAATTCGGCCGCGCGAAAAGCACTCGAC
GCTTCAGCGAGCGGTCGCGCCCCGTGACGTGGACGTCTCGTCCAGAATCT
CCGCTGCGGCTAAGTTATAAACTTTGTACTACAGAGGTTACCGAGCCTTC
ATGTTGTGCGCGCGCTTTAGGTCCTGCATCCCGTTTCATCGCCAAGCTTT
TGGTCCTCGGTCCTAAGCAGCGGCCCCGGAGCACTCGGCGCTGCGGCCTT
CTCATCGTCGTCCGCTTTGTCCAAGTGCACACCCCAGAGGGATACCACTC
GTTCCTCGGCCTCAATCTGAACCACTCGCCAGATATGCCCTCAACCCTTT
ATCGACCCCATCTGTCGCCCGATATGCGCACAAGCTTGCGGGTAGCGCGG
GTTGCGCTCCTAATTTTTCTTTGGTTTTCCTCTTCGTCCCTGGCTGTGCT
AACTGCCAAGGCGCTTTTCTCTGGAATTAGTGAACATATCCCACCGTTTC
CTTTTGCCTTGACCCTCACAGCTACCAATAACGTGATCGCTTCCCTCGCA
TCCTGTCTGTTCTCCAATCGTGCTCTACATGCCTCCAGTGATGAAGGTGC
AACCCGCATTGCATTCACCATCGGTGCCGCAACCGCCGCGGAGATCGGAC
TGTCCAACATTGCCCTCAATCTTTTGACACTCTCCTTCTCTACTGTGCTC
AAAGGAATGGCTCCGTTTTTCGTTCTTGGATGGGGCATTGTGCTGCGCGT
CCATACCTTACGTCTTGGTATAGCCGCTTCACTTTGTGCCATGGCCTTAG
GTCTCATCCTTGCTGTGGCAGGCGAGCATAAAAACACCGACCCTGCCCTT
TCGCACTTTTTGCGAATTGGCCTTCTTGCCCAGCTTCTTTCAGCGCTGTG
TTCGGGCTTTCGTTGGGTTCTCACGCAAGTATTTATTAAAGGTGAAACCG
TTCTTGACCAAAGAATCAGCAACTTGTTGAAGTGTCGATCGAGTTCCAAG
GGCTGGTCTGCTATCGAAACTGTACGACGAGTTTCGCCTTTCACCCTTTT
GTGGGTGTTACCTTTCGTTGTTCTGGTAGAAGGATTCAAGCTCTTTGGTT
GGTTTCAGAATGCGTCATTTCTACAAATTGCCAAACTTCTTGTTGTTTTG
TCAACCATTGGTGTTTCAGTGTTTGTGCTTCTCTGGTCCGAGTATGAGCT
GGTGAGGATCACTTCGTCATTAACAGTGTCAGTGACTTTCGTTCTCAAAG
AGGTTCTTGTAATATTTGCTGGCGCGTTGATCTTTAGTGAGCGCCTTTCA
TGGCTAACATGTATCGGATTTGCTATAGTGCAGGGAGGCATACTAGCTTA
TGTATCACAACGCAATCGGGATTTTGGAAAGAAAACGGCGTCTCCGGAAC
AACTTCTTGGTTTTGAGTCCCCATAA
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