Ggra6477.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6477.t1
Unique NameGgra6477.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length269
Homology
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BLAST of Ggra6477.t1 vs. uniprot
Match: A0A2V3IH48 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IH48_9FLOR)

HSP 1 Score: 223 bits (568), Expect = 3.830e-70
Identity = 110/147 (74.83%), Postives = 126/147 (85.71%), Query Frame = 0 
Query:    1 MSDRHRSTTNRCLGQVATALIAPDGGRPNLLPKTIATLWYLLILPDAQARFHRQVYRKRLPWYAPKRVFGLVLSAANIATIPLSWVLLLAGKRNASRIACFSVLLNPPTITLTWLIIKELTKTTAKKTIRLGCASVDAIMKPFKSKK 147
            MSD H STT RCLG+VAT LIA DGGR N++ KT+ATLWY+LILPDAQARFHRQVYRKRLPWYAP RVFGL+LSAANIAT+PLSWVLL AG+RNASR+ACFSVLLNPPTITL+ LI++EL+    +K  R+G  S D I KPFKSK+
Sbjct:    1 MSD-HSSTTRRCLGEVATVLIAQDGGRANIVAKTLATLWYILILPDAQARFHRQVYRKRLPWYAPGRVFGLMLSAANIATMPLSWVLLFAGRRNASRVACFSVLLNPPTITLSSLIVRELSSALVRKAYRIGLTSADVITKPFKSKE 146
The following BLAST results are available for this feature:
BLAST of Ggra6477.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IH483.830e-7074.83Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 268..268
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 147..268
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 155..268
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 30..47
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 48..67
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..29
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 91..95
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 118..268
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 96..117
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 68..90
NoneNo IPR availableTMHMMTMhelixcoord: 68..90
NoneNo IPR availableTMHMMTMhelixcoord: 95..117

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000074_piloncontigtig00000074_pilon:231463..232269 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6477.t1Ggra6477.t1Gracilaria gracilis GNS1m malemRNAtig00000074_pilon 231463..232269 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6477.t1 ID=Ggra6477.t1|Name=Ggra6477.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=269bp
MSDRHRSTTNRCLGQVATALIAPDGGRPNLLPKTIATLWYLLILPDAQAR
FHRQVYRKRLPWYAPKRVFGLVLSAANIATIPLSWVLLLAGKRNASRIAC
FSVLLNPPTITLTWLIIKELTKTTAKKTIRLGCASVDAIMKPFKSKKAPQ
VEAPPTSAPESTSANTSTSAPKTDSLENTSTSAPKTDPSENTSTNTSTGA
PNTGPPKNSSTNTSTSAPNTDSSENPSTTTSPSAPKTDASENTSKTASTS
TPKTEPPASETPSEATQS*
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