Ggra6459.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6459.t1
Unique NameGgra6459.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length170
Homology
BLAST of Ggra6459.t1 vs. uniprot
Match: A0A2V3J5K6 (AP complex subunit sigma n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5K6_9FLOR)

HSP 1 Score: 292 bits (748), Expect = 1.950e-99
Identity = 147/169 (86.98%), Postives = 160/169 (94.67%), Query Frame = 0
Query:    1 MIKSVIVLNNHGQPRLTKFYDYLPEDRQQQLIRDVFAIVSKRSDGLCNFVEGGTMFGPGVRVIYRHYATLFFVFCVDEAESELGILDLIQVFVETLDRCFENVCELDLIFYMNKIHYVLDEIVVGGLVLETNMADILAALQEAKRAESQASKPSLVSTGRSFSLSRVYR 169
            MIKS++VLNNHGQPRLTKFY+Y+PEDRQQQ++ DVF++VSKRSD LCNFV+G ++FGPGVRVIYRHYATLFFVF VDEAESELGILDLIQVFVETLDRCFENVCELDLIFYMNKIHYVLDEIVVGGLVLETNMADILAALQEAKR+ESQAS  SLVS  RSFSL+R YR
Sbjct:    1 MIKSIVVLNNHGQPRLTKFYEYVPEDRQQQVVTDVFSMVSKRSDALCNFVDGASIFGPGVRVIYRHYATLFFVFVVDEAESELGILDLIQVFVETLDRCFENVCELDLIFYMNKIHYVLDEIVVGGLVLETNMADILAALQEAKRSESQASSTSLVSPARSFSLARSYR 169          
BLAST of Ggra6459.t1 vs. uniprot
Match: R7QFG9 (AP complex subunit sigma n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QFG9_CHOCR)

HSP 1 Score: 272 bits (695), Expect = 2.330e-91
Identity = 138/169 (81.66%), Postives = 153/169 (90.53%), Query Frame = 0
Query:    1 MIKSVIVLNNHGQPRLTKFYDYLPEDRQQQLIRDVFAIVSKRSDGLCNFVEGGTMFGPGVRVIYRHYATLFFVFCVDEAESELGILDLIQVFVETLDRCFENVCELDLIFYMNKIHYVLDEIVVGGLVLETNMADILAALQEAKRAESQASKPSLVSTGRSFSLSRVYR 169
            MIKSVIVLNNHGQPRLTKFYDYLPEDRQQQL+RDVFAIVS+R++ LCNFV+GGT+FGP VRVIYRHYATL FVFCVD++ESELGILDLIQVFVETLDRCFENVCELDLIF+M+KI+YVLDEI+VGGLVLET+MADIL+ALQ AKR     +  S  S  RSFSLSR YR
Sbjct:    1 MIKSVIVLNNHGQPRLTKFYDYLPEDRQQQLVRDVFAIVSRRNEALCNFVQGGTIFGPDVRVIYRHYATLSFVFCVDQSESELGILDLIQVFVETLDRCFENVCELDLIFHMDKINYVLDEIIVGGLVLETSMADILSALQSAKRESLATTAISSASVTRSFSLSRAYR 169          
BLAST of Ggra6459.t1 vs. uniprot
Match: A0A0B6YAD7 (AP complex subunit sigma (Fragment) n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B6YAD7_9EUPU)

HSP 1 Score: 217 bits (552), Expect = 2.350e-69
Identity = 100/153 (65.36%), Postives = 129/153 (84.31%), Query Frame = 0
Query:    1 MIKSVIVLNNHGQPRLTKFYDYLPEDRQQQLIRDVFAIVSKRSDGLCNFVEGGTMFGPG-VRVIYRHYATLFFVFCVDEAESELGILDLIQVFVETLDRCFENVCELDLIFYMNKIHYVLDEIVVGGLVLETNMADILAALQEAKRAESQASK 152
            MIK+++V NNHG+PRLTKFY Y PED Q Q+IR+ F +VSKR D +CNF+EGGT+ G    R+IYRHYATL+FVFCVD +ESELGILDLIQVFVETLD+CFENVCELDLIF+++K+HY+L E+V+GG+VLETNM +I+  ++E  + E Q ++
Sbjct:    1 MIKAILVFNNHGKPRLTKFYQYFPEDIQHQIIRETFHLVSKRDDSVCNFLEGGTLIGGSDYRLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHYILSELVMGGMVLETNMTEIITRIEEQNKIEKQEAR 153          
BLAST of Ggra6459.t1 vs. uniprot
Match: A0A0B6YB07 (Clat_adaptor_s domain-containing protein n=12 Tax=Protostomia TaxID=33317 RepID=A0A0B6YB07_9EUPU)

HSP 1 Score: 216 bits (551), Expect = 3.920e-69
Identity = 100/150 (66.67%), Postives = 127/150 (84.67%), Query Frame = 0
Query:    1 MIKSVIVLNNHGQPRLTKFYDYLPEDRQQQLIRDVFAIVSKRSDGLCNFVEGGTMFGPG-VRVIYRHYATLFFVFCVDEAESELGILDLIQVFVETLDRCFENVCELDLIFYMNKIHYVLDEIVVGGLVLETNMADILAALQEAKRAESQ 149
            MIK+++V NNHG+PRLTKFY Y PED Q Q+IR+ F +VSKR D +CNF+EGGT+ G    R+IYRHYATL+FVFCVD +ESELGILDLIQVFVETLD+CFENVCELDLIF+++K+HY+L E+V+GG+VLETNM +I+  ++E  + E Q
Sbjct:    1 MIKAILVFNNHGKPRLTKFYQYFPEDIQHQIIRETFHLVSKRDDSVCNFLEGGTLIGGSDYRLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHYILSELVMGGMVLETNMTEIITRIEEQNKIEKQ 150          
BLAST of Ggra6459.t1 vs. uniprot
Match: A0A4D5RDK6 (AP complex subunit sigma (Fragment) n=9 Tax=Chelicerata TaxID=6843 RepID=A0A4D5RDK6_IXOSC)

HSP 1 Score: 215 bits (547), Expect = 9.120e-69
Identity = 97/150 (64.67%), Postives = 129/150 (86.00%), Query Frame = 0
Query:    1 MIKSVIVLNNHGQPRLTKFYDYLPEDRQQQLIRDVFAIVSKRSDGLCNFVEGGTMFGPG-VRVIYRHYATLFFVFCVDEAESELGILDLIQVFVETLDRCFENVCELDLIFYMNKIHYVLDEIVVGGLVLETNMADILAALQEAKRAESQ 149
            MIK+++V NNHG+PRL+KFY + PE+ QQQ+IR+ F +VSKR D +CNF+EGGT+ G    ++IYRHYATL+FVFCVD +ESELGILDLIQVFVETLD+CFENVCELDLIF+M+K+HY+L+E+V+GG+VLETNM +I+  +++  + E Q
Sbjct:    1 MIKAILVFNNHGKPRLSKFYQFYPEESQQQIIRETFQLVSKRDDNVCNFLEGGTLIGGSDYKIIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYILNELVMGGMVLETNMTEIITRIEDQSKIEKQ 150          
BLAST of Ggra6459.t1 vs. uniprot
Match: AP-3 complex subunit sigma-2 isoform X2 n=2 Tax=Tribolium TaxID=7069 RepID=UPI00077DB4DA (AP-3 complex subunit sigma-2 isoform X2 n=2 Tax=Tribolium TaxID=7069 RepID=UPI00077DB4DA)

HSP 1 Score: 215 bits (547), Expect = 9.120e-69
Identity = 98/152 (64.47%), Postives = 130/152 (85.53%), Query Frame = 0
Query:    1 MIKSVIVLNNHGQPRLTKFYDYLPEDRQQQLIRDVFAIVSKRSDGLCNFVEGGTMFGPG-VRVIYRHYATLFFVFCVDEAESELGILDLIQVFVETLDRCFENVCELDLIFYMNKIHYVLDEIVVGGLVLETNMADILAALQEAKRAESQAS 151
            MIK+++V NNHG+PRL+KFY Y PED QQQ+I++ F +VSKR D +CNF+EGG++ G    ++IYRHYATL+FVFCVD +ESELGILDLIQVFVETLD+CFENVCELDLIF+++K+HY+L+E+V+GG+VLETNM +IL  +++  + E Q S
Sbjct:    1 MIKAILVFNNHGKPRLSKFYQYFPEDMQQQIIKETFQLVSKRDDNVCNFLEGGSLIGGSDYKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHYILNELVMGGMVLETNMTEILTRIEDQNKLEKQES 152          
BLAST of Ggra6459.t1 vs. uniprot
Match: K1PQF3 (AP complex subunit sigma n=2 Tax=Crassostrea TaxID=6564 RepID=K1PQF3_CRAGI)

HSP 1 Score: 214 bits (544), Expect = 1.440e-68
Identity = 99/148 (66.89%), Postives = 127/148 (85.81%), Query Frame = 0
Query:    1 MIKSVIVLNNHGQPRLTKFYDYLPEDRQQQLIRDVFAIVSKRSDGLCNFVEGGTMFGPG-VRVIYRHYATLFFVFCVDEAESELGILDLIQVFVETLDRCFENVCELDLIFYMNKIHYVLDEIVVGGLVLETNMADILAALQEAKRAE 147
            MIK+++V NNHG+PRL+KFY Y PED QQQ+IR+ F +VSKR D +CNF+EGGT+ G    ++IYRHYATLFFVFCVD +ESELGILDLIQVFVETLD+CFENVCELDLIF+++K+H +L E+V+GG+VLETNM++IL  ++E  + E
Sbjct:    1 MIKAILVFNNHGKPRLSKFYQYFPEDLQQQIIRETFHLVSKRDDNVCNFLEGGTLIGGSDYKIIYRHYATLFFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNILSELVMGGMVLETNMSEILTRIEEQSKLE 148          
BLAST of Ggra6459.t1 vs. uniprot
Match: AP-3 complex subunit sigma-1 isoform X2 n=1 Tax=Crassostrea gigas TaxID=29159 RepID=UPI0005C38E0E (AP-3 complex subunit sigma-1 isoform X2 n=1 Tax=Crassostrea gigas TaxID=29159 RepID=UPI0005C38E0E)

HSP 1 Score: 214 bits (544), Expect = 1.820e-68
Identity = 99/148 (66.89%), Postives = 127/148 (85.81%), Query Frame = 0
Query:    1 MIKSVIVLNNHGQPRLTKFYDYLPEDRQQQLIRDVFAIVSKRSDGLCNFVEGGTMFGPG-VRVIYRHYATLFFVFCVDEAESELGILDLIQVFVETLDRCFENVCELDLIFYMNKIHYVLDEIVVGGLVLETNMADILAALQEAKRAE 147
            MIK+++V NNHG+PRL+KFY Y PED QQQ+IR+ F +VSKR D +CNF+EGGT+ G    ++IYRHYATLFFVFCVD +ESELGILDLIQVFVETLD+CFENVCELDLIF+++K+H +L E+V+GG+VLETNM++IL  ++E  + E
Sbjct:    1 MIKAILVFNNHGKPRLSKFYQYFPEDLQQQIIRETFHLVSKRDDNVCNFLEGGTLIGGSDYKIIYRHYATLFFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNILSELVMGGMVLETNMSEILTRIEEQSKLE 148          
BLAST of Ggra6459.t1 vs. uniprot
Match: AP-3 complex subunit sigma-2 isoform X2 n=1 Tax=Anoplophora glabripennis TaxID=217634 RepID=UPI000874B975 (AP-3 complex subunit sigma-2 isoform X2 n=1 Tax=Anoplophora glabripennis TaxID=217634 RepID=UPI000874B975)

HSP 1 Score: 214 bits (545), Expect = 1.900e-68
Identity = 97/150 (64.67%), Postives = 129/150 (86.00%), Query Frame = 0
Query:    1 MIKSVIVLNNHGQPRLTKFYDYLPEDRQQQLIRDVFAIVSKRSDGLCNFVEGGTMFGPG-VRVIYRHYATLFFVFCVDEAESELGILDLIQVFVETLDRCFENVCELDLIFYMNKIHYVLDEIVVGGLVLETNMADILAALQEAKRAESQ 149
            MIK+++V NNHG+PRL+KFY Y PED QQQ+I++ F +VSKR D +CNF+EGG++ G    ++IYRHYATL+FVFCVD +ESELGILDLIQVFVETLD+CFENVCELDLIF+++K+HY+L+E+V+GG+VLETNM +IL  +++  + E Q
Sbjct:    1 MIKAILVFNNHGKPRLSKFYQYFPEDMQQQIIKETFQLVSKRDDNVCNFLEGGSLIGGSDYKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHYILNELVMGGMVLETNMTEILTRIEDQNKLEKQ 150          
BLAST of Ggra6459.t1 vs. uniprot
Match: A0A2C9K1L2 (Clat_adaptor_s domain-containing protein n=1 Tax=Biomphalaria glabrata TaxID=6526 RepID=A0A2C9K1L2_BIOGL)

HSP 1 Score: 215 bits (547), Expect = 2.070e-68
Identity = 99/156 (63.46%), Postives = 131/156 (83.97%), Query Frame = 0
Query:    1 MIKSVIVLNNHGQPRLTKFYDYLPEDRQQQLIRDVFAIVSKRSDGLCNFVEGGTMFGPG-VRVIYRHYATLFFVFCVDEAESELGILDLIQVFVETLDRCFENVCELDLIFYMNKIHYVLDEIVVGGLVLETNMADILAALQEAKRAESQASKPSL 155
            MIK+++V NNHG+PRL+KFY + PED Q Q+IR+ F +VSKR D +CNF+EGGT+ G    ++IYRHYATL+FVFCVD +ESELGILDLIQVFVETLD+CFENVCELDLIF+++K+HY+L E+V+GG+VLETNM +I+  ++E  + E Q S+ +L
Sbjct:    1 MIKAILVFNNHGKPRLSKFYQFYPEDLQHQIIRETFHLVSKRDDSVCNFLEGGTLIGGSDYKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHYILSELVMGGMVLETNMTEIITRIEEQNKLEKQESRENL 156          
The following BLAST results are available for this feature:
BLAST of Ggra6459.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J5K61.950e-9986.98AP complex subunit sigma n=1 Tax=Gracilariopsis ch... [more]
R7QFG92.330e-9181.66AP complex subunit sigma n=1 Tax=Chondrus crispus ... [more]
A0A0B6YAD72.350e-6965.36AP complex subunit sigma (Fragment) n=1 Tax=Arion ... [more]
A0A0B6YB073.920e-6966.67Clat_adaptor_s domain-containing protein n=12 Tax=... [more]
A0A4D5RDK69.120e-6964.67AP complex subunit sigma (Fragment) n=9 Tax=Chelic... [more]
AP-3 complex subunit sigma-2 isoform X2 n=2 Tax=Tribolium TaxID=7069 RepID=UPI00077DB4DA9.120e-6964.47AP-3 complex subunit sigma-2 isoform X2 n=2 Tax=Tr... [more]
K1PQF31.440e-6866.89AP complex subunit sigma n=2 Tax=Crassostrea TaxID... [more]
AP-3 complex subunit sigma-1 isoform X2 n=1 Tax=Crassostrea gigas TaxID=29159 RepID=UPI0005C38E0E1.820e-6866.89AP-3 complex subunit sigma-1 isoform X2 n=1 Tax=Cr... [more]
AP-3 complex subunit sigma-2 isoform X2 n=1 Tax=Anoplophora glabripennis TaxID=217634 RepID=UPI000874B9751.900e-6864.67AP-3 complex subunit sigma-2 isoform X2 n=1 Tax=An... [more]
A0A2C9K1L22.070e-6863.46Clat_adaptor_s domain-containing protein n=1 Tax=B... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016635Adaptor protein complex, sigma subunitPIRSFPIRSF015588AP_complex_sigmacoord: 1..156
e-value: 2.8E-54
score: 181.0
IPR016635Adaptor protein complex, sigma subunitPANTHERPTHR11753ADAPTOR COMPLEXES SMALL SUBUNIT FAMILYcoord: 1..148
NoneNo IPR availableGENE3D3.30.450.60coord: 1..160
e-value: 1.9E-61
score: 208.5
NoneNo IPR availablePANTHERPTHR11753:SF10AP-3 COMPLEX SUBUNIT SIGMA-2coord: 1..148
IPR022775AP complex, mu/sigma subunitPFAMPF01217Clat_adaptor_scoord: 1..146
e-value: 2.4E-49
score: 166.9
IPR027155AP-3 complex subunit sigmaCDDcd14834AP3_sigmacoord: 1..145
e-value: 5.6594E-96
score: 272.179
IPR011012Longin-like domain superfamilySUPERFAMILY64356SNARE-likecoord: 1..140

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000074_piloncontigtig00000074_pilon:178188..178697 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6459.t1Ggra6459.t1Gracilaria gracilis GNS1m malemRNAtig00000074_pilon 178188..178697 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6459.t1 ID=Ggra6459.t1|Name=Ggra6459.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=170bp
MIKSVIVLNNHGQPRLTKFYDYLPEDRQQQLIRDVFAIVSKRSDGLCNFV
EGGTMFGPGVRVIYRHYATLFFVFCVDEAESELGILDLIQVFVETLDRCF
ENVCELDLIFYMNKIHYVLDEIVVGGLVLETNMADILAALQEAKRAESQA
SKPSLVSTGRSFSLSRVYR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR016635AP_complex_ssu
IPR022775AP_mu_sigma_su
IPR027155APS3
IPR011012Longin-like_dom_sf