Ggra7916.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7916.t1
Unique NameGgra7916.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length235
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000073_piloncontigtig00000073_pilon:430281..431074 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D8LK30
PFAMsHAD_2
Max annot lvl2759|Eukaryota
GOsGO:0003674,GO:0003824,GO:0003850,GO:0004346,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019203,GO:0042578,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0050308,GO:0050309,GO:0071944
Evalue1.85e-45
EggNOG OGsCOG0637@1|root,KOG2914@2759|Eukaryota
Descriptionpseudouridine 5'-phosphatase activity
COG categoryL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7916Ggra7916Gracilaria gracilis GNS1m malegenetig00000073_pilon 430281..431074 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7916.t1Ggra7916.t1Gracilaria gracilis GNS1m malepolypeptidetig00000073_pilon 430281..431074 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7916.t1.start1Ggra7916.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000073_pilon 430281..430283 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7916.t1.CDS1Ggra7916.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000073_pilon 430281..430339 +
Ggra7916.t1.CDS2Ggra7916.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000073_pilon 430429..431074 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7916.t1.exon1Ggra7916.t1.exon1Gracilaria gracilis GNS1m maleexontig00000073_pilon 430281..430339 +
Ggra7916.t1.exon2Ggra7916.t1.exon2Gracilaria gracilis GNS1m maleexontig00000073_pilon 430429..431074 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7916.t1.intron1Ggra7916.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000073_pilon 430340..430428 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7916.t1.stop1Ggra7916.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000073_pilon 431072..431074 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7916.t1 ID=Ggra7916.t1|Name=Ggra7916.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=235bp
MPPESLQRSLAAIFFDLDGTCVNSDSIHFDCYRDTLQQLVPTFNDGNPIT
RQYYDSQMSGRQNPELVAQILPQLSLKEQTHIWQTKESRYEQVISHGVSP
VAGLKKLLQRCKQQGIITYVVTNAPKSTCAKTMQSIAITDHFGNQVVVSE
ECEHPKPHPAPYLRAMELAAVSASESIAFEDSPSGTTSATAAGLLTVGMR
STQTDEALRSFGAAFTVSDYNDPKLASALSMWLK*
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spliced messenger RNA

>Ggra7916.t1 ID=Ggra7916.t1|Name=Ggra7916.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=705bp|location=Sequence derived from alignment at tig00000073_pilon:430281..431074+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCCCGAGTCTCTGCAACGAAGCCTCGCAGCCATTTTCTTTGACCT
GGACGGAACCTGTGTGAACAGCGATTCCATCCATTTTGACTGCTATCGCG
ACACTCTACAGCAACTGGTACCAACCTTCAATGACGGAAACCCAATCACG
CGACAATACTATGACTCACAAATGTCCGGTCGTCAAAACCCAGAGCTCGT
GGCACAGATATTGCCACAACTTTCACTGAAAGAGCAGACGCACATATGGC
AAACAAAAGAAAGTCGTTATGAACAGGTCATATCCCACGGTGTTTCTCCA
GTTGCCGGACTCAAAAAGCTTCTTCAACGATGCAAACAACAAGGAATCAT
TACCTATGTCGTCACGAATGCGCCAAAGAGTACGTGCGCGAAAACAATGC
AATCCATAGCAATCACCGACCATTTTGGAAACCAAGTTGTGGTGTCTGAA
GAATGTGAGCATCCGAAACCCCATCCAGCTCCATACTTGCGCGCGATGGA
GCTTGCTGCTGTGTCTGCGAGCGAGTCAATTGCTTTCGAAGACTCGCCGA
GCGGCACTACTAGCGCTACAGCTGCTGGCTTATTAACGGTGGGGATGCGT
TCAACACAGACTGACGAGGCGCTGCGTTCATTCGGTGCCGCTTTTACTGT
GAGCGATTACAATGATCCCAAACTTGCCAGTGCCTTATCTATGTGGCTCA
AGTAG
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protein sequence of Ggra7916.t1

>Ggra7916.t1 ID=Ggra7916.t1|Name=Ggra7916.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=235bp
MPPESLQRSLAAIFFDLDGTCVNSDSIHFDCYRDTLQQLVPTFNDGNPIT
RQYYDSQMSGRQNPELVAQILPQLSLKEQTHIWQTKESRYEQVISHGVSP
VAGLKKLLQRCKQQGIITYVVTNAPKSTCAKTMQSIAITDHFGNQVVVSE
ECEHPKPHPAPYLRAMELAAVSASESIAFEDSPSGTTSATAAGLLTVGMR
STQTDEALRSFGAAFTVSDYNDPKLASALSMWLK*
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mRNA from alignment at tig00000073_pilon:430281..431074+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7916.t1 ID=Ggra7916.t1|Name=Ggra7916.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=794bp|location=Sequence derived from alignment at tig00000073_pilon:430281..431074+ (Gracilaria gracilis GNS1m male)
ATGCCGCCCGAGTCTCTGCAACGAAGCCTCGCAGCCATTTTCTTTGACCT
GGACGGAACGTACGTCATTCCTTGCAGTCCACAACGGCACCTATACCCTC
AACATACGCTAACCCACCCGTATCTTGCGACTATGAAAACGTTCACAGCT
GTGTGAACAGCGATTCCATCCATTTTGACTGCTATCGCGACACTCTACAG
CAACTGGTACCAACCTTCAATGACGGAAACCCAATCACGCGACAATACTA
TGACTCACAAATGTCCGGTCGTCAAAACCCAGAGCTCGTGGCACAGATAT
TGCCACAACTTTCACTGAAAGAGCAGACGCACATATGGCAAACAAAAGAA
AGTCGTTATGAACAGGTCATATCCCACGGTGTTTCTCCAGTTGCCGGACT
CAAAAAGCTTCTTCAACGATGCAAACAACAAGGAATCATTACCTATGTCG
TCACGAATGCGCCAAAGAGTACGTGCGCGAAAACAATGCAATCCATAGCA
ATCACCGACCATTTTGGAAACCAAGTTGTGGTGTCTGAAGAATGTGAGCA
TCCGAAACCCCATCCAGCTCCATACTTGCGCGCGATGGAGCTTGCTGCTG
TGTCTGCGAGCGAGTCAATTGCTTTCGAAGACTCGCCGAGCGGCACTACT
AGCGCTACAGCTGCTGGCTTATTAACGGTGGGGATGCGTTCAACACAGAC
TGACGAGGCGCTGCGTTCATTCGGTGCCGCTTTTACTGTGAGCGATTACA
ATGATCCCAAACTTGCCAGTGCCTTATCTATGTGGCTCAAGTAG
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Coding sequence (CDS) from alignment at tig00000073_pilon:430281..431074+

>Ggra7916.t1 ID=Ggra7916.t1|Name=Ggra7916.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=705bp|location=Sequence derived from alignment at tig00000073_pilon:430281..431074+ (Gracilaria gracilis GNS1m male)
ATGCCGCCCGAGTCTCTGCAACGAAGCCTCGCAGCCATTTTCTTTGACCT
GGACGGAACCTGTGTGAACAGCGATTCCATCCATTTTGACTGCTATCGCG
ACACTCTACAGCAACTGGTACCAACCTTCAATGACGGAAACCCAATCACG
CGACAATACTATGACTCACAAATGTCCGGTCGTCAAAACCCAGAGCTCGT
GGCACAGATATTGCCACAACTTTCACTGAAAGAGCAGACGCACATATGGC
AAACAAAAGAAAGTCGTTATGAACAGGTCATATCCCACGGTGTTTCTCCA
GTTGCCGGACTCAAAAAGCTTCTTCAACGATGCAAACAACAAGGAATCAT
TACCTATGTCGTCACGAATGCGCCAAAGAGTACGTGCGCGAAAACAATGC
AATCCATAGCAATCACCGACCATTTTGGAAACCAAGTTGTGGTGTCTGAA
GAATGTGAGCATCCGAAACCCCATCCAGCTCCATACTTGCGCGCGATGGA
GCTTGCTGCTGTGTCTGCGAGCGAGTCAATTGCTTTCGAAGACTCGCCGA
GCGGCACTACTAGCGCTACAGCTGCTGGCTTATTAACGGTGGGGATGCGT
TCAACACAGACTGACGAGGCGCTGCGTTCATTCGGTGCCGCTTTTACTGT
GAGCGATTACAATGATCCCAAACTTGCCAGTGCCTTATCTATGTGGCTCA
AGTAG
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