Ggra7897.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra7897.t1
Unique Name	Ggra7897.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	601

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000073_pilon	contig	tig00000073_pilon:275190..276992 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra7897	Ggra7897	Gracilaria gracilis GNS1m male	gene	tig00000073_pilon 275190..276992 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7897.t1.stop1	Ggra7897.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000073_pilon 275190..275192 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7897.t1.CDS1	Ggra7897.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000073_pilon 275190..276992 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7897.t1.exon1	Ggra7897.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000073_pilon 275190..276992 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7897.t1.start1	Ggra7897.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000073_pilon 276990..276992 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7897.t1	Ggra7897.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000073_pilon 275190..276992 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000073_pilon:275190..276992-
coding sequence from alignment at tig00000073_pilon:275190..276992-

mRNA sequence

>Ggra7897.t1 ID=Ggra7897.t1|Name=Ggra7897.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=601bp
MSRYNDYDSRLPRRSGGYGAAYDADRNRDRERSRERPDRSHERDRAPRDD
YSSRAPIPTIPASAAYDTYRPPSLQSRSSRSAYDTYRPGASSASSSSAYD
TYRPPAAAPASASAYDTYRPTRPSRPPPRSAASAYDTYRPSGRSNPPSSA
YDTYRPTERPPASSAYDTYRPSDRAPGGSEYDTYRPGGREMPVAKDNDYS
AYETYRPPANPSNEYMRKLEKYAGVSVPSRERERGRQNRRNDYESESEES
SEEEEEKRSKSRKKKASRKKSSRKRKNKKAHTSDESEEEEEDESETESDV
EDSAEDSSEEESESDEDSEEEDRRRKKSSKRKSSKSKKSSKSDRKKKSSK
KSIKKKKKKRSDDSDESSPSDSEEESADEIADMSKAVVPVNPGNLGATAF
GTDPNTFPDLMGGADMTHAQELAMEPTAADFANLPGEVPETQSQALSLAG
RFPQLGSAVTTPFGAGVMTNQGVMSQMGMGAPGMGAPGMGAPGMGTPGMQ
GMNPMNGSMGMGMPASMGMPNMAGGMGGANMMGGAGAMAGMQPNMAMGGG
MGMPGAMGMPGAMGMPGAMGAQMPINGGAAQPDLMTPFAGMNLGGNQNAF
*

spliced messenger RNA

>Ggra7897.t1 ID=Ggra7897.t1|Name=Ggra7897.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1803bp|location=Sequence derived from alignment at tig00000073_pilon:275190..276992- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCGCTACAACGATTACGACTCGCGCCTACCGCGCCGTTCCGGCGG
CTACGGCGCCGCATACGACGCCGACAGAAATCGCGACCGTGAACGCAGTC
GTGAACGTCCTGACCGCAGTCACGAGCGCGACCGAGCCCCTCGTGATGAT
TATTCATCTCGAGCTCCCATCCCGACAATTCCAGCCTCTGCTGCGTACGA
TACATATCGTCCGCCCAGTTTGCAGAGCAGATCGTCTCGTTCGGCATACG
ACACCTATCGTCCAGGCGCTTCTTCTGCTTCTTCAAGCTCTGCGTATGAT
ACCTACCGCCCGCCGGCTGCTGCTCCTGCTTCTGCTTCTGCCTATGATAC
TTATCGACCAACCAGGCCGAGTAGACCTCCGCCGCGGTCTGCAGCCAGCG
CTTATGATACCTATCGCCCAAGTGGTCGTTCTAATCCGCCGTCTTCTGCA
TACGACACATACAGGCCTACGGAAAGACCACCCGCATCTAGTGCGTACGA
CACGTACAGGCCGTCGGACAGAGCGCCTGGAGGAAGTGAGTACGATACCT
ACAGACCGGGAGGTCGTGAGATGCCGGTTGCAAAAGACAATGATTATAGC
GCGTACGAAACATATCGCCCGCCGGCCAATCCTTCGAATGAGTACATGAG
GAAACTTGAGAAGTATGCTGGTGTGTCTGTGCCCTCGAGGGAGAGGGAAC
GAGGCCGACAAAATAGGCGAAATGATTATGAAAGTGAGAGCGAAGAAAGC
TCAGAAGAGGAAGAGGAGAAAAGGTCGAAGTCTAGGAAAAAGAAGGCCTC
CCGCAAGAAGTCCTCTCGAAAGCGAAAAAACAAGAAGGCGCATACGAGCG
ATGAATCGGAAGAGGAAGAAGAGGATGAGTCTGAAACGGAATCGGATGTT
GAAGATTCTGCAGAAGACTCATCTGAAGAGGAGAGCGAGTCTGACGAAGA
TAGTGAAGAGGAAGATCGTAGAAGGAAGAAATCTTCAAAGAGAAAATCAT
CAAAGTCTAAGAAATCGTCGAAATCAGACAGGAAGAAGAAGAGTTCAAAG
AAGAGTATCAAGAAAAAGAAGAAGAAGAGAAGCGATGACTCTGACGAATC
CAGTCCCTCTGACAGCGAGGAAGAAAGCGCCGATGAGATTGCTGATATGA
GCAAAGCAGTTGTTCCGGTGAACCCTGGCAATTTGGGTGCAACTGCCTTT
GGAACAGATCCTAACACATTTCCTGACTTGATGGGTGGGGCTGACATGAC
ACACGCACAGGAACTTGCGATGGAACCAACCGCAGCGGATTTTGCAAATC
TTCCAGGTGAAGTACCAGAAACCCAGTCACAAGCTTTGTCTTTAGCTGGT
CGTTTCCCGCAGCTCGGTTCTGCTGTTACCACACCGTTTGGTGCTGGTGT
GATGACGAACCAGGGTGTCATGTCGCAGATGGGGATGGGCGCTCCTGGAA
TGGGCGCCCCGGGAATGGGCGCGCCAGGAATGGGCACTCCGGGAATGCAA
GGAATGAATCCTATGAATGGTAGCATGGGGATGGGGATGCCAGCGTCTAT
GGGGATGCCGAATATGGCTGGCGGAATGGGCGGTGCTAACATGATGGGTG
GCGCAGGAGCTATGGCTGGCATGCAGCCAAACATGGCTATGGGAGGTGGA
ATGGGGATGCCGGGTGCTATGGGAATGCCAGGTGCTATGGGAATGCCGGG
TGCCATGGGTGCTCAGATGCCCATAAATGGTGGAGCAGCGCAACCTGATT
TGATGACTCCTTTTGCAGGAATGAATCTTGGAGGAAACCAGAATGCCTTC
TAG

protein sequence of Ggra7897.t1

>Ggra7897.t1 ID=Ggra7897.t1|Name=Ggra7897.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=601bp
MSRYNDYDSRLPRRSGGYGAAYDADRNRDRERSRERPDRSHERDRAPRDD
YSSRAPIPTIPASAAYDTYRPPSLQSRSSRSAYDTYRPGASSASSSSAYD
TYRPPAAAPASASAYDTYRPTRPSRPPPRSAASAYDTYRPSGRSNPPSSA
YDTYRPTERPPASSAYDTYRPSDRAPGGSEYDTYRPGGREMPVAKDNDYS
AYETYRPPANPSNEYMRKLEKYAGVSVPSRERERGRQNRRNDYESESEES
SEEEEEKRSKSRKKKASRKKSSRKRKNKKAHTSDESEEEEEDESETESDV
EDSAEDSSEEESESDEDSEEEDRRRKKSSKRKSSKSKKSSKSDRKKKSSK
KSIKKKKKKRSDDSDESSPSDSEEESADEIADMSKAVVPVNPGNLGATAF
GTDPNTFPDLMGGADMTHAQELAMEPTAADFANLPGEVPETQSQALSLAG
RFPQLGSAVTTPFGAGVMTNQGVMSQMGMGAPGMGAPGMGAPGMGTPGMQ
GMNPMNGSMGMGMPASMGMPNMAGGMGGANMMGGAGAMAGMQPNMAMGGG
MGMPGAMGMPGAMGMPGAMGAQMPINGGAAQPDLMTPFAGMNLGGNQNAF
*

mRNA from alignment at tig00000073_pilon:275190..276992-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra7897.t1 ID=Ggra7897.t1|Name=Ggra7897.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1803bp|location=Sequence derived from alignment at tig00000073_pilon:275190..276992- (Gracilaria gracilis GNS1m male)
ATGTCGCGCTACAACGATTACGACTCGCGCCTACCGCGCCGTTCCGGCGG
CTACGGCGCCGCATACGACGCCGACAGAAATCGCGACCGTGAACGCAGTC
GTGAACGTCCTGACCGCAGTCACGAGCGCGACCGAGCCCCTCGTGATGAT
TATTCATCTCGAGCTCCCATCCCGACAATTCCAGCCTCTGCTGCGTACGA
TACATATCGTCCGCCCAGTTTGCAGAGCAGATCGTCTCGTTCGGCATACG
ACACCTATCGTCCAGGCGCTTCTTCTGCTTCTTCAAGCTCTGCGTATGAT
ACCTACCGCCCGCCGGCTGCTGCTCCTGCTTCTGCTTCTGCCTATGATAC
TTATCGACCAACCAGGCCGAGTAGACCTCCGCCGCGGTCTGCAGCCAGCG
CTTATGATACCTATCGCCCAAGTGGTCGTTCTAATCCGCCGTCTTCTGCA
TACGACACATACAGGCCTACGGAAAGACCACCCGCATCTAGTGCGTACGA
CACGTACAGGCCGTCGGACAGAGCGCCTGGAGGAAGTGAGTACGATACCT
ACAGACCGGGAGGTCGTGAGATGCCGGTTGCAAAAGACAATGATTATAGC
GCGTACGAAACATATCGCCCGCCGGCCAATCCTTCGAATGAGTACATGAG
GAAACTTGAGAAGTATGCTGGTGTGTCTGTGCCCTCGAGGGAGAGGGAAC
GAGGCCGACAAAATAGGCGAAATGATTATGAAAGTGAGAGCGAAGAAAGC
TCAGAAGAGGAAGAGGAGAAAAGGTCGAAGTCTAGGAAAAAGAAGGCCTC
CCGCAAGAAGTCCTCTCGAAAGCGAAAAAACAAGAAGGCGCATACGAGCG
ATGAATCGGAAGAGGAAGAAGAGGATGAGTCTGAAACGGAATCGGATGTT
GAAGATTCTGCAGAAGACTCATCTGAAGAGGAGAGCGAGTCTGACGAAGA
TAGTGAAGAGGAAGATCGTAGAAGGAAGAAATCTTCAAAGAGAAAATCAT
CAAAGTCTAAGAAATCGTCGAAATCAGACAGGAAGAAGAAGAGTTCAAAG
AAGAGTATCAAGAAAAAGAAGAAGAAGAGAAGCGATGACTCTGACGAATC
CAGTCCCTCTGACAGCGAGGAAGAAAGCGCCGATGAGATTGCTGATATGA
GCAAAGCAGTTGTTCCGGTGAACCCTGGCAATTTGGGTGCAACTGCCTTT
GGAACAGATCCTAACACATTTCCTGACTTGATGGGTGGGGCTGACATGAC
ACACGCACAGGAACTTGCGATGGAACCAACCGCAGCGGATTTTGCAAATC
TTCCAGGTGAAGTACCAGAAACCCAGTCACAAGCTTTGTCTTTAGCTGGT
CGTTTCCCGCAGCTCGGTTCTGCTGTTACCACACCGTTTGGTGCTGGTGT
GATGACGAACCAGGGTGTCATGTCGCAGATGGGGATGGGCGCTCCTGGAA
TGGGCGCCCCGGGAATGGGCGCGCCAGGAATGGGCACTCCGGGAATGCAA
GGAATGAATCCTATGAATGGTAGCATGGGGATGGGGATGCCAGCGTCTAT
GGGGATGCCGAATATGGCTGGCGGAATGGGCGGTGCTAACATGATGGGTG
GCGCAGGAGCTATGGCTGGCATGCAGCCAAACATGGCTATGGGAGGTGGA
ATGGGGATGCCGGGTGCTATGGGAATGCCAGGTGCTATGGGAATGCCGGG
TGCCATGGGTGCTCAGATGCCCATAAATGGTGGAGCAGCGCAACCTGATT
TGATGACTCCTTTTGCAGGAATGAATCTTGGAGGAAACCAGAATGCCTTC
TAG

Coding sequence (CDS) from alignment at tig00000073_pilon:275190..276992-

>Ggra7897.t1 ID=Ggra7897.t1|Name=Ggra7897.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1803bp|location=Sequence derived from alignment at tig00000073_pilon:275190..276992- (Gracilaria gracilis GNS1m male)
ATGTCGCGCTACAACGATTACGACTCGCGCCTACCGCGCCGTTCCGGCGG
CTACGGCGCCGCATACGACGCCGACAGAAATCGCGACCGTGAACGCAGTC
GTGAACGTCCTGACCGCAGTCACGAGCGCGACCGAGCCCCTCGTGATGAT
TATTCATCTCGAGCTCCCATCCCGACAATTCCAGCCTCTGCTGCGTACGA
TACATATCGTCCGCCCAGTTTGCAGAGCAGATCGTCTCGTTCGGCATACG
ACACCTATCGTCCAGGCGCTTCTTCTGCTTCTTCAAGCTCTGCGTATGAT
ACCTACCGCCCGCCGGCTGCTGCTCCTGCTTCTGCTTCTGCCTATGATAC
TTATCGACCAACCAGGCCGAGTAGACCTCCGCCGCGGTCTGCAGCCAGCG
CTTATGATACCTATCGCCCAAGTGGTCGTTCTAATCCGCCGTCTTCTGCA
TACGACACATACAGGCCTACGGAAAGACCACCCGCATCTAGTGCGTACGA
CACGTACAGGCCGTCGGACAGAGCGCCTGGAGGAAGTGAGTACGATACCT
ACAGACCGGGAGGTCGTGAGATGCCGGTTGCAAAAGACAATGATTATAGC
GCGTACGAAACATATCGCCCGCCGGCCAATCCTTCGAATGAGTACATGAG
GAAACTTGAGAAGTATGCTGGTGTGTCTGTGCCCTCGAGGGAGAGGGAAC
GAGGCCGACAAAATAGGCGAAATGATTATGAAAGTGAGAGCGAAGAAAGC
TCAGAAGAGGAAGAGGAGAAAAGGTCGAAGTCTAGGAAAAAGAAGGCCTC
CCGCAAGAAGTCCTCTCGAAAGCGAAAAAACAAGAAGGCGCATACGAGCG
ATGAATCGGAAGAGGAAGAAGAGGATGAGTCTGAAACGGAATCGGATGTT
GAAGATTCTGCAGAAGACTCATCTGAAGAGGAGAGCGAGTCTGACGAAGA
TAGTGAAGAGGAAGATCGTAGAAGGAAGAAATCTTCAAAGAGAAAATCAT
CAAAGTCTAAGAAATCGTCGAAATCAGACAGGAAGAAGAAGAGTTCAAAG
AAGAGTATCAAGAAAAAGAAGAAGAAGAGAAGCGATGACTCTGACGAATC
CAGTCCCTCTGACAGCGAGGAAGAAAGCGCCGATGAGATTGCTGATATGA
GCAAAGCAGTTGTTCCGGTGAACCCTGGCAATTTGGGTGCAACTGCCTTT
GGAACAGATCCTAACACATTTCCTGACTTGATGGGTGGGGCTGACATGAC
ACACGCACAGGAACTTGCGATGGAACCAACCGCAGCGGATTTTGCAAATC
TTCCAGGTGAAGTACCAGAAACCCAGTCACAAGCTTTGTCTTTAGCTGGT
CGTTTCCCGCAGCTCGGTTCTGCTGTTACCACACCGTTTGGTGCTGGTGT
GATGACGAACCAGGGTGTCATGTCGCAGATGGGGATGGGCGCTCCTGGAA
TGGGCGCCCCGGGAATGGGCGCGCCAGGAATGGGCACTCCGGGAATGCAA
GGAATGAATCCTATGAATGGTAGCATGGGGATGGGGATGCCAGCGTCTAT
GGGGATGCCGAATATGGCTGGCGGAATGGGCGGTGCTAACATGATGGGTG
GCGCAGGAGCTATGGCTGGCATGCAGCCAAACATGGCTATGGGAGGTGGA
ATGGGGATGCCGGGTGCTATGGGAATGCCAGGTGCTATGGGAATGCCGGG
TGCCATGGGTGCTCAGATGCCCATAAATGGTGGAGCAGCGCAACCTGATT
TGATGACTCCTTTTGCAGGAATGAATCTTGGAGGAAACCAGAATGCCTTC
TAG