Ggra7893.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7893.t1
Unique NameGgra7893.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length429
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000073_piloncontigtig00000073_pilon:261836..263122 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog161934.XP_010671594.1
PFAMsHerpes_UL52
Max annot lvl35493|Streptophyta
Evalue1.23e-50
EggNOG OGs28JNI@1|root,2QS1Q@2759|Eukaryota,37IPT@33090|Viridiplantae,3G8XX@35493|Streptophyta
DescriptionDNA-directed primase polymerase
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7893Ggra7893Gracilaria gracilis GNS1m malegenetig00000073_pilon 261836..263122 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7893.t1.stop1Ggra7893.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000073_pilon 261836..261838 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7893.t1.CDS1Ggra7893.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000073_pilon 261836..263122 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7893.t1.exon1Ggra7893.t1.exon1Gracilaria gracilis GNS1m maleexontig00000073_pilon 261836..263122 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7893.t1.start1Ggra7893.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000073_pilon 263120..263122 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7893.t1Ggra7893.t1Gracilaria gracilis GNS1m malepolypeptidetig00000073_pilon 261836..263122 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7893.t1 ID=Ggra7893.t1|Name=Ggra7893.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=429bp
MSSSIPTTKFYTKKPRFRYQFKSKKAVKHVLHSVRTDATVRVDTFPTQQQ
AFDHADKLPLRVQVWSNEIDSSGKRRYLTGSYDAFWRFYSRCMRRSNTLH
FYEVIRGRRASKLYFDLEYKRAQNVCDAEKMVDRLVEAVSNLAGIQLRRH
SEDIVELDSTTEKKFSRHLVFETIAFYDNIQAGLFAQKVVDDMREQHEDL
IMVNKDETKVPFVDLGVYTKNRCFRIIGSSKFGKSSRLLPLNHKGDRNSF
SKNYFMSSLVCSVKKGVTLRGNPNPSHMSPGISVRSERYSSEGRTFERDQ
ASPHPRLDKYISSIIEPHGGGIYGITIVGEHLLVYAIKGGYKYCANIGRH
HKSNNVLLVADMDARTMYQRCFDPDCRGFRSPSWAMPPWVFEEINDDDLY
RLAYEVEDLDGGISDSALNAVLDDITET*
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spliced messenger RNA

>Ggra7893.t1 ID=Ggra7893.t1|Name=Ggra7893.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1287bp|location=Sequence derived from alignment at tig00000073_pilon:261836..263122- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCATCCTCAATCCCAACAACCAAGTTCTACACAAAGAAGCCCCGTTT
CCGATACCAATTCAAATCGAAGAAAGCCGTCAAGCATGTGCTTCATTCGG
TCCGCACCGATGCTACCGTGCGGGTTGATACCTTTCCTACACAGCAGCAA
GCATTCGATCACGCCGACAAGCTCCCTTTGCGCGTCCAAGTGTGGTCCAA
CGAAATTGACTCCAGTGGGAAGAGGCGATACTTGACAGGATCATACGACG
CGTTCTGGCGCTTCTACTCGCGCTGTATGCGACGTTCGAACACTCTGCAC
TTCTATGAAGTAATTCGAGGTCGAAGAGCCTCCAAACTCTACTTCGATTT
GGAGTACAAGCGTGCGCAGAATGTATGTGATGCTGAAAAGATGGTAGATC
GTCTCGTTGAAGCAGTGTCAAATTTGGCCGGAATACAGCTCAGAAGGCAC
TCAGAAGATATTGTTGAGCTTGATTCCACCACGGAAAAGAAGTTCTCCCG
CCATCTCGTGTTTGAAACTATTGCATTCTACGACAACATACAAGCCGGAC
TTTTTGCACAGAAAGTTGTTGACGACATGCGAGAACAGCACGAAGATCTA
ATAATGGTGAACAAAGACGAAACAAAGGTTCCTTTCGTTGATCTCGGCGT
TTATACCAAGAACAGATGCTTTCGAATCATTGGCAGCTCAAAGTTTGGCA
AGTCCTCTCGCCTTCTTCCCCTGAATCACAAGGGTGATCGAAATTCGTTC
TCCAAAAACTACTTCATGAGCAGTCTAGTGTGTAGCGTAAAGAAAGGCGT
AACACTTCGAGGGAATCCGAATCCATCGCACATGAGCCCAGGGATCAGTG
TAAGAAGCGAACGATATTCGTCCGAAGGAAGAACGTTCGAGCGCGATCAG
GCTTCTCCACATCCTAGACTAGACAAATACATTTCTTCAATCATTGAACC
TCATGGTGGGGGAATATATGGCATAACAATTGTGGGAGAACACCTGTTGG
TTTATGCCATCAAAGGGGGATACAAGTACTGTGCAAACATTGGCAGGCAC
CATAAGTCAAACAATGTCCTACTTGTCGCTGATATGGACGCGAGAACCAT
GTACCAAAGATGCTTTGACCCAGATTGTCGAGGGTTTCGTTCTCCAAGCT
GGGCAATGCCACCTTGGGTTTTCGAGGAGATCAACGATGATGACCTGTAT
CGCCTCGCGTACGAGGTAGAAGATCTAGATGGGGGGATAAGCGATAGTGC
TCTGAACGCCGTTCTCGATGACATCACGGAGACATAA
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protein sequence of Ggra7893.t1

>Ggra7893.t1 ID=Ggra7893.t1|Name=Ggra7893.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=429bp
MSSSIPTTKFYTKKPRFRYQFKSKKAVKHVLHSVRTDATVRVDTFPTQQQ
AFDHADKLPLRVQVWSNEIDSSGKRRYLTGSYDAFWRFYSRCMRRSNTLH
FYEVIRGRRASKLYFDLEYKRAQNVCDAEKMVDRLVEAVSNLAGIQLRRH
SEDIVELDSTTEKKFSRHLVFETIAFYDNIQAGLFAQKVVDDMREQHEDL
IMVNKDETKVPFVDLGVYTKNRCFRIIGSSKFGKSSRLLPLNHKGDRNSF
SKNYFMSSLVCSVKKGVTLRGNPNPSHMSPGISVRSERYSSEGRTFERDQ
ASPHPRLDKYISSIIEPHGGGIYGITIVGEHLLVYAIKGGYKYCANIGRH
HKSNNVLLVADMDARTMYQRCFDPDCRGFRSPSWAMPPWVFEEINDDDLY
RLAYEVEDLDGGISDSALNAVLDDITET*
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mRNA from alignment at tig00000073_pilon:261836..263122-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7893.t1 ID=Ggra7893.t1|Name=Ggra7893.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1287bp|location=Sequence derived from alignment at tig00000073_pilon:261836..263122- (Gracilaria gracilis GNS1m male)
ATGTCATCCTCAATCCCAACAACCAAGTTCTACACAAAGAAGCCCCGTTT
CCGATACCAATTCAAATCGAAGAAAGCCGTCAAGCATGTGCTTCATTCGG
TCCGCACCGATGCTACCGTGCGGGTTGATACCTTTCCTACACAGCAGCAA
GCATTCGATCACGCCGACAAGCTCCCTTTGCGCGTCCAAGTGTGGTCCAA
CGAAATTGACTCCAGTGGGAAGAGGCGATACTTGACAGGATCATACGACG
CGTTCTGGCGCTTCTACTCGCGCTGTATGCGACGTTCGAACACTCTGCAC
TTCTATGAAGTAATTCGAGGTCGAAGAGCCTCCAAACTCTACTTCGATTT
GGAGTACAAGCGTGCGCAGAATGTATGTGATGCTGAAAAGATGGTAGATC
GTCTCGTTGAAGCAGTGTCAAATTTGGCCGGAATACAGCTCAGAAGGCAC
TCAGAAGATATTGTTGAGCTTGATTCCACCACGGAAAAGAAGTTCTCCCG
CCATCTCGTGTTTGAAACTATTGCATTCTACGACAACATACAAGCCGGAC
TTTTTGCACAGAAAGTTGTTGACGACATGCGAGAACAGCACGAAGATCTA
ATAATGGTGAACAAAGACGAAACAAAGGTTCCTTTCGTTGATCTCGGCGT
TTATACCAAGAACAGATGCTTTCGAATCATTGGCAGCTCAAAGTTTGGCA
AGTCCTCTCGCCTTCTTCCCCTGAATCACAAGGGTGATCGAAATTCGTTC
TCCAAAAACTACTTCATGAGCAGTCTAGTGTGTAGCGTAAAGAAAGGCGT
AACACTTCGAGGGAATCCGAATCCATCGCACATGAGCCCAGGGATCAGTG
TAAGAAGCGAACGATATTCGTCCGAAGGAAGAACGTTCGAGCGCGATCAG
GCTTCTCCACATCCTAGACTAGACAAATACATTTCTTCAATCATTGAACC
TCATGGTGGGGGAATATATGGCATAACAATTGTGGGAGAACACCTGTTGG
TTTATGCCATCAAAGGGGGATACAAGTACTGTGCAAACATTGGCAGGCAC
CATAAGTCAAACAATGTCCTACTTGTCGCTGATATGGACGCGAGAACCAT
GTACCAAAGATGCTTTGACCCAGATTGTCGAGGGTTTCGTTCTCCAAGCT
GGGCAATGCCACCTTGGGTTTTCGAGGAGATCAACGATGATGACCTGTAT
CGCCTCGCGTACGAGGTAGAAGATCTAGATGGGGGGATAAGCGATAGTGC
TCTGAACGCCGTTCTCGATGACATCACGGAGACATAA
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Coding sequence (CDS) from alignment at tig00000073_pilon:261836..263122-

>Ggra7893.t1 ID=Ggra7893.t1|Name=Ggra7893.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1287bp|location=Sequence derived from alignment at tig00000073_pilon:261836..263122- (Gracilaria gracilis GNS1m male)
ATGTCATCCTCAATCCCAACAACCAAGTTCTACACAAAGAAGCCCCGTTT
CCGATACCAATTCAAATCGAAGAAAGCCGTCAAGCATGTGCTTCATTCGG
TCCGCACCGATGCTACCGTGCGGGTTGATACCTTTCCTACACAGCAGCAA
GCATTCGATCACGCCGACAAGCTCCCTTTGCGCGTCCAAGTGTGGTCCAA
CGAAATTGACTCCAGTGGGAAGAGGCGATACTTGACAGGATCATACGACG
CGTTCTGGCGCTTCTACTCGCGCTGTATGCGACGTTCGAACACTCTGCAC
TTCTATGAAGTAATTCGAGGTCGAAGAGCCTCCAAACTCTACTTCGATTT
GGAGTACAAGCGTGCGCAGAATGTATGTGATGCTGAAAAGATGGTAGATC
GTCTCGTTGAAGCAGTGTCAAATTTGGCCGGAATACAGCTCAGAAGGCAC
TCAGAAGATATTGTTGAGCTTGATTCCACCACGGAAAAGAAGTTCTCCCG
CCATCTCGTGTTTGAAACTATTGCATTCTACGACAACATACAAGCCGGAC
TTTTTGCACAGAAAGTTGTTGACGACATGCGAGAACAGCACGAAGATCTA
ATAATGGTGAACAAAGACGAAACAAAGGTTCCTTTCGTTGATCTCGGCGT
TTATACCAAGAACAGATGCTTTCGAATCATTGGCAGCTCAAAGTTTGGCA
AGTCCTCTCGCCTTCTTCCCCTGAATCACAAGGGTGATCGAAATTCGTTC
TCCAAAAACTACTTCATGAGCAGTCTAGTGTGTAGCGTAAAGAAAGGCGT
AACACTTCGAGGGAATCCGAATCCATCGCACATGAGCCCAGGGATCAGTG
TAAGAAGCGAACGATATTCGTCCGAAGGAAGAACGTTCGAGCGCGATCAG
GCTTCTCCACATCCTAGACTAGACAAATACATTTCTTCAATCATTGAACC
TCATGGTGGGGGAATATATGGCATAACAATTGTGGGAGAACACCTGTTGG
TTTATGCCATCAAAGGGGGATACAAGTACTGTGCAAACATTGGCAGGCAC
CATAAGTCAAACAATGTCCTACTTGTCGCTGATATGGACGCGAGAACCAT
GTACCAAAGATGCTTTGACCCAGATTGTCGAGGGTTTCGTTCTCCAAGCT
GGGCAATGCCACCTTGGGTTTTCGAGGAGATCAACGATGATGACCTGTAT
CGCCTCGCGTACGAGGTAGAAGATCTAGATGGGGGGATAAGCGATAGTGC
TCTGAACGCCGTTCTCGATGACATCACGGAGACATAA
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