Ggra7899.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7899.t1
Unique NameGgra7899.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length565
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000073_piloncontigtig00000073_pilon:278884..280578 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703804.1
Preferred nameGNL2
PFAMsMMR_HSR1,NGP1NT
Max annot lvl2759|Eukaryota
KEGG koko:K14537,ko:K16474
KEGG Pathwayko03008,map03008
GOsGO:0000054,GO:0000055,GO:0000166,GO:0001654,GO:0001745,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0006403,GO:0006405,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0007275,GO:0007423,GO:0008104,GO:0008150,GO:0009653,GO:0009887,GO:0015031,GO:0015833,GO:0015931,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0022613,GO:0030684,GO:0030687,GO:0031503,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032991,GO:0033036,GO:0033750,GO:0034613,GO:0035639,GO:0036094,GO:0042254,GO:0042886,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048513,GO:0048592,GO:0048731,GO:0048749,GO:0048856,GO:0050657,GO:0050658,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0070013,GO:0070727,GO:0071166,GO:0071426,GO:0071428,GO:0071702,GO:0071705,GO:0071840,GO:0090596,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1990904
Evalue4.83e-168
EggNOG OGsCOG1161@1|root,KOG2423@2759|Eukaryota
DescriptionGTP binding
COG categoryK
BRITEko00000,ko00001,ko03009,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7899Ggra7899Gracilaria gracilis GNS1m malegenetig00000073_pilon 278884..280578 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7899.t1.stop1Ggra7899.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000073_pilon 278884..278886 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7899.t1.CDS1Ggra7899.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000073_pilon 278884..280578 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7899.t1.exon1Ggra7899.t1.exon1Gracilaria gracilis GNS1m maleexontig00000073_pilon 278884..280578 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7899.t1.start1Ggra7899.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000073_pilon 280576..280578 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7899.t1Ggra7899.t1Gracilaria gracilis GNS1m malepolypeptidetig00000073_pilon 278884..280578 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7899.t1 ID=Ggra7899.t1|Name=Ggra7899.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=565bp
MPKVKPKLTAGVGGSKPRHSMDVNRGNHKIGHGRDKATVKRIQMYKTKAY
KRDRNGKIIKDAGDLTNTTPELGAGRVAPNRKWFGNTRVVQQKDLSRFRD
AMAKAQADPFSVLLKQKKLPMTLVTEPQGEGRALAGSQIGLLVNEPFDQT
FSKKRRRKRPKLAASSYEQLLKNAEQSNKEYEDNIERQEQHAEELAKKAA
AEAPPDPDAKAGLRFDDLKNANRERVFDKGQSKRIWAELHKVVDSSDVVI
QVLDARDPMGTRCPYLEKFLKRQCSHKHMILLLNKADLVPTWVSSAWLKI
LSTEYPTLVFHSSITNPFGKGSLINLLRQFKALHPEKKSISCGLVGYPNV
GKSSVINTLRGKKVSKVAPIPGETKVWQYVTMFRSIFLIDCPGVVHDSTR
NSQSEAVLKGVVRIESLRGMAAEYIPALLDRVKDKYIQRTYGIDSWERPD
DLLEKLARKTGKLLKGGEPDVNTAGRMMLSDFQRGKLPWFMPPPTEENEE
ENEDDDEDASDPKPNDEEDSEKKELKGTNPDNDFAENSQEVHAVTVEHED
IKKLKVSKRVADDE*
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spliced messenger RNA

>Ggra7899.t1 ID=Ggra7899.t1|Name=Ggra7899.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1695bp|location=Sequence derived from alignment at tig00000073_pilon:278884..280578- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGAAAGTGAAACCGAAGCTCACCGCCGGCGTAGGCGGCAGTAAGCC
CCGTCACTCCATGGACGTCAACCGTGGAAACCACAAAATCGGCCACGGTC
GTGACAAGGCCACCGTGAAAAGAATCCAGATGTACAAGACCAAAGCATAT
AAACGCGATCGAAATGGCAAGATAATCAAGGATGCTGGAGATTTGACCAA
TACAACGCCGGAACTAGGAGCTGGTCGCGTCGCGCCCAACAGAAAGTGGT
TCGGAAATACTCGCGTCGTGCAGCAGAAGGATTTGAGCAGGTTTAGGGAC
GCTATGGCAAAGGCTCAGGCAGATCCGTTTTCAGTGCTGCTGAAGCAGAA
AAAACTGCCTATGACGCTTGTCACCGAGCCGCAGGGCGAGGGGCGTGCGT
TGGCGGGTTCGCAAATCGGTCTTCTGGTCAATGAGCCGTTTGACCAAACG
TTTTCGAAAAAGAGAAGACGAAAACGTCCCAAATTGGCCGCCTCTTCATA
CGAGCAATTGTTGAAGAATGCGGAACAGAGTAACAAGGAATACGAGGATA
ACATAGAGAGACAGGAGCAGCATGCAGAAGAGCTTGCGAAGAAAGCTGCC
GCAGAAGCGCCACCGGACCCAGATGCAAAGGCTGGCCTTCGTTTTGATGA
TTTGAAGAATGCGAACCGAGAACGAGTCTTTGACAAGGGGCAGAGTAAGA
GAATATGGGCCGAACTGCACAAGGTTGTGGATTCTAGCGACGTGGTCATT
CAAGTGCTCGACGCGCGTGATCCAATGGGAACACGATGCCCTTATCTTGA
AAAGTTTCTGAAGCGACAATGTTCCCACAAACATATGATCCTGTTGCTTA
ACAAGGCTGACTTGGTGCCTACTTGGGTTTCATCAGCTTGGCTGAAAATA
CTCAGTACCGAGTATCCTACACTTGTGTTTCACTCGAGTATTACAAATCC
GTTTGGAAAGGGCTCGCTTATTAACCTTTTACGACAATTTAAAGCCCTTC
ATCCGGAGAAGAAGTCAATATCATGCGGCTTGGTTGGATATCCCAATGTC
GGCAAGTCGAGCGTCATTAACACTCTAAGAGGGAAGAAGGTATCAAAGGT
TGCACCCATTCCTGGTGAGACCAAGGTGTGGCAGTATGTCACAATGTTCC
GCTCTATTTTTCTGATTGATTGCCCAGGTGTGGTACATGATTCAACCAGA
AACTCCCAGTCAGAAGCAGTTTTGAAAGGCGTTGTAAGGATCGAATCTCT
GCGGGGAATGGCTGCAGAGTACATTCCTGCCCTCTTGGATCGCGTCAAGG
ACAAGTACATCCAACGGACATATGGCATTGATTCATGGGAACGACCAGAT
GATTTATTGGAGAAGCTTGCACGGAAAACTGGAAAACTATTGAAAGGTGG
CGAGCCTGACGTGAACACCGCGGGGAGAATGATGCTTAGTGACTTTCAAA
GAGGCAAACTTCCGTGGTTTATGCCACCGCCAACTGAAGAAAACGAAGAA
GAGAATGAAGACGATGATGAAGACGCATCTGATCCGAAGCCAAACGATGA
AGAAGACAGTGAAAAAAAGGAGCTGAAAGGCACGAACCCAGATAACGATT
TTGCTGAAAACTCCCAAGAAGTCCATGCTGTTACTGTGGAGCACGAGGAC
ATTAAGAAACTTAAGGTCTCGAAACGAGTAGCTGACGACGAATAA
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protein sequence of Ggra7899.t1

>Ggra7899.t1 ID=Ggra7899.t1|Name=Ggra7899.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=565bp
MPKVKPKLTAGVGGSKPRHSMDVNRGNHKIGHGRDKATVKRIQMYKTKAY
KRDRNGKIIKDAGDLTNTTPELGAGRVAPNRKWFGNTRVVQQKDLSRFRD
AMAKAQADPFSVLLKQKKLPMTLVTEPQGEGRALAGSQIGLLVNEPFDQT
FSKKRRRKRPKLAASSYEQLLKNAEQSNKEYEDNIERQEQHAEELAKKAA
AEAPPDPDAKAGLRFDDLKNANRERVFDKGQSKRIWAELHKVVDSSDVVI
QVLDARDPMGTRCPYLEKFLKRQCSHKHMILLLNKADLVPTWVSSAWLKI
LSTEYPTLVFHSSITNPFGKGSLINLLRQFKALHPEKKSISCGLVGYPNV
GKSSVINTLRGKKVSKVAPIPGETKVWQYVTMFRSIFLIDCPGVVHDSTR
NSQSEAVLKGVVRIESLRGMAAEYIPALLDRVKDKYIQRTYGIDSWERPD
DLLEKLARKTGKLLKGGEPDVNTAGRMMLSDFQRGKLPWFMPPPTEENEE
ENEDDDEDASDPKPNDEEDSEKKELKGTNPDNDFAENSQEVHAVTVEHED
IKKLKVSKRVADDE*
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mRNA from alignment at tig00000073_pilon:278884..280578-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7899.t1 ID=Ggra7899.t1|Name=Ggra7899.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1695bp|location=Sequence derived from alignment at tig00000073_pilon:278884..280578- (Gracilaria gracilis GNS1m male)
ATGCCGAAAGTGAAACCGAAGCTCACCGCCGGCGTAGGCGGCAGTAAGCC
CCGTCACTCCATGGACGTCAACCGTGGAAACCACAAAATCGGCCACGGTC
GTGACAAGGCCACCGTGAAAAGAATCCAGATGTACAAGACCAAAGCATAT
AAACGCGATCGAAATGGCAAGATAATCAAGGATGCTGGAGATTTGACCAA
TACAACGCCGGAACTAGGAGCTGGTCGCGTCGCGCCCAACAGAAAGTGGT
TCGGAAATACTCGCGTCGTGCAGCAGAAGGATTTGAGCAGGTTTAGGGAC
GCTATGGCAAAGGCTCAGGCAGATCCGTTTTCAGTGCTGCTGAAGCAGAA
AAAACTGCCTATGACGCTTGTCACCGAGCCGCAGGGCGAGGGGCGTGCGT
TGGCGGGTTCGCAAATCGGTCTTCTGGTCAATGAGCCGTTTGACCAAACG
TTTTCGAAAAAGAGAAGACGAAAACGTCCCAAATTGGCCGCCTCTTCATA
CGAGCAATTGTTGAAGAATGCGGAACAGAGTAACAAGGAATACGAGGATA
ACATAGAGAGACAGGAGCAGCATGCAGAAGAGCTTGCGAAGAAAGCTGCC
GCAGAAGCGCCACCGGACCCAGATGCAAAGGCTGGCCTTCGTTTTGATGA
TTTGAAGAATGCGAACCGAGAACGAGTCTTTGACAAGGGGCAGAGTAAGA
GAATATGGGCCGAACTGCACAAGGTTGTGGATTCTAGCGACGTGGTCATT
CAAGTGCTCGACGCGCGTGATCCAATGGGAACACGATGCCCTTATCTTGA
AAAGTTTCTGAAGCGACAATGTTCCCACAAACATATGATCCTGTTGCTTA
ACAAGGCTGACTTGGTGCCTACTTGGGTTTCATCAGCTTGGCTGAAAATA
CTCAGTACCGAGTATCCTACACTTGTGTTTCACTCGAGTATTACAAATCC
GTTTGGAAAGGGCTCGCTTATTAACCTTTTACGACAATTTAAAGCCCTTC
ATCCGGAGAAGAAGTCAATATCATGCGGCTTGGTTGGATATCCCAATGTC
GGCAAGTCGAGCGTCATTAACACTCTAAGAGGGAAGAAGGTATCAAAGGT
TGCACCCATTCCTGGTGAGACCAAGGTGTGGCAGTATGTCACAATGTTCC
GCTCTATTTTTCTGATTGATTGCCCAGGTGTGGTACATGATTCAACCAGA
AACTCCCAGTCAGAAGCAGTTTTGAAAGGCGTTGTAAGGATCGAATCTCT
GCGGGGAATGGCTGCAGAGTACATTCCTGCCCTCTTGGATCGCGTCAAGG
ACAAGTACATCCAACGGACATATGGCATTGATTCATGGGAACGACCAGAT
GATTTATTGGAGAAGCTTGCACGGAAAACTGGAAAACTATTGAAAGGTGG
CGAGCCTGACGTGAACACCGCGGGGAGAATGATGCTTAGTGACTTTCAAA
GAGGCAAACTTCCGTGGTTTATGCCACCGCCAACTGAAGAAAACGAAGAA
GAGAATGAAGACGATGATGAAGACGCATCTGATCCGAAGCCAAACGATGA
AGAAGACAGTGAAAAAAAGGAGCTGAAAGGCACGAACCCAGATAACGATT
TTGCTGAAAACTCCCAAGAAGTCCATGCTGTTACTGTGGAGCACGAGGAC
ATTAAGAAACTTAAGGTCTCGAAACGAGTAGCTGACGACGAATAA
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Coding sequence (CDS) from alignment at tig00000073_pilon:278884..280578-

>Ggra7899.t1 ID=Ggra7899.t1|Name=Ggra7899.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1695bp|location=Sequence derived from alignment at tig00000073_pilon:278884..280578- (Gracilaria gracilis GNS1m male)
ATGCCGAAAGTGAAACCGAAGCTCACCGCCGGCGTAGGCGGCAGTAAGCC
CCGTCACTCCATGGACGTCAACCGTGGAAACCACAAAATCGGCCACGGTC
GTGACAAGGCCACCGTGAAAAGAATCCAGATGTACAAGACCAAAGCATAT
AAACGCGATCGAAATGGCAAGATAATCAAGGATGCTGGAGATTTGACCAA
TACAACGCCGGAACTAGGAGCTGGTCGCGTCGCGCCCAACAGAAAGTGGT
TCGGAAATACTCGCGTCGTGCAGCAGAAGGATTTGAGCAGGTTTAGGGAC
GCTATGGCAAAGGCTCAGGCAGATCCGTTTTCAGTGCTGCTGAAGCAGAA
AAAACTGCCTATGACGCTTGTCACCGAGCCGCAGGGCGAGGGGCGTGCGT
TGGCGGGTTCGCAAATCGGTCTTCTGGTCAATGAGCCGTTTGACCAAACG
TTTTCGAAAAAGAGAAGACGAAAACGTCCCAAATTGGCCGCCTCTTCATA
CGAGCAATTGTTGAAGAATGCGGAACAGAGTAACAAGGAATACGAGGATA
ACATAGAGAGACAGGAGCAGCATGCAGAAGAGCTTGCGAAGAAAGCTGCC
GCAGAAGCGCCACCGGACCCAGATGCAAAGGCTGGCCTTCGTTTTGATGA
TTTGAAGAATGCGAACCGAGAACGAGTCTTTGACAAGGGGCAGAGTAAGA
GAATATGGGCCGAACTGCACAAGGTTGTGGATTCTAGCGACGTGGTCATT
CAAGTGCTCGACGCGCGTGATCCAATGGGAACACGATGCCCTTATCTTGA
AAAGTTTCTGAAGCGACAATGTTCCCACAAACATATGATCCTGTTGCTTA
ACAAGGCTGACTTGGTGCCTACTTGGGTTTCATCAGCTTGGCTGAAAATA
CTCAGTACCGAGTATCCTACACTTGTGTTTCACTCGAGTATTACAAATCC
GTTTGGAAAGGGCTCGCTTATTAACCTTTTACGACAATTTAAAGCCCTTC
ATCCGGAGAAGAAGTCAATATCATGCGGCTTGGTTGGATATCCCAATGTC
GGCAAGTCGAGCGTCATTAACACTCTAAGAGGGAAGAAGGTATCAAAGGT
TGCACCCATTCCTGGTGAGACCAAGGTGTGGCAGTATGTCACAATGTTCC
GCTCTATTTTTCTGATTGATTGCCCAGGTGTGGTACATGATTCAACCAGA
AACTCCCAGTCAGAAGCAGTTTTGAAAGGCGTTGTAAGGATCGAATCTCT
GCGGGGAATGGCTGCAGAGTACATTCCTGCCCTCTTGGATCGCGTCAAGG
ACAAGTACATCCAACGGACATATGGCATTGATTCATGGGAACGACCAGAT
GATTTATTGGAGAAGCTTGCACGGAAAACTGGAAAACTATTGAAAGGTGG
CGAGCCTGACGTGAACACCGCGGGGAGAATGATGCTTAGTGACTTTCAAA
GAGGCAAACTTCCGTGGTTTATGCCACCGCCAACTGAAGAAAACGAAGAA
GAGAATGAAGACGATGATGAAGACGCATCTGATCCGAAGCCAAACGATGA
AGAAGACAGTGAAAAAAAGGAGCTGAAAGGCACGAACCCAGATAACGATT
TTGCTGAAAACTCCCAAGAAGTCCATGCTGTTACTGTGGAGCACGAGGAC
ATTAAGAAACTTAAGGTCTCGAAACGAGTAGCTGACGACGAATAA
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