Ggra7934.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra7934.t1
Unique Name	Ggra7934.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	358

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000073_pilon	contig	tig00000073_pilon:467136..468209 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMJ279CT
PFAMs	DUF1995
Max annot lvl	2759\|Eukaryota
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009719,GO:0009725,GO:0009735,GO:0010033,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0050896
Evalue	3.3e-76
EggNOG OGs	28PEZ@1\|root,2QW2X@2759\|Eukaryota
Description	Domain of unknown function (DUF1995)
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra7934	Ggra7934	Gracilaria gracilis GNS1m male	gene	tig00000073_pilon 467136..468209 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7934.t1.start1	Ggra7934.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000073_pilon 467136..467138 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7934.t1.CDS1	Ggra7934.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000073_pilon 467136..468209 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7934.t1.exon1	Ggra7934.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000073_pilon 467136..468209 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7934.t1.stop1	Ggra7934.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000073_pilon 468207..468209 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7934.t1	Ggra7934.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000073_pilon 467136..468209 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000073_pilon:467136..468209+
coding sequence from alignment at tig00000073_pilon:467136..468209+

mRNA sequence

>Ggra7934.t1 ID=Ggra7934.t1|Name=Ggra7934.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=358bp
MAFVPPIPTSHFGTRTGYATISNHPSISRIRRGRASTLIFSSATNPADTQ
PPTEVKQSFAPPPSTFYQAITQAQQAAADAIKAGFRVLEVEFPPLPTAQL
ESSAVGAYDVSDANLRLAIDFSSKFAGEGKRVAIAFPDLIEKDRAVELNN
ESEEPIENVRFSAVRDSKKGAFLERLWVKPEVEIAVRDEDDIFLVLGSSC
QELPDVERLVEAVGERPVILFNLKLDSARGDLGLPAFPRKDLHYRFLSKI
LPVYYLRTRTYSRSIIRPPYVVNFSGALYKVFPGPYQVLLDTAAGNYERL
TTLEERPPLGQVRDILTDGLKMEGVAGKEASLLSKGYKSMTWWEEDRSKA
VSQNWRS*

spliced messenger RNA

>Ggra7934.t1 ID=Ggra7934.t1|Name=Ggra7934.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1074bp|location=Sequence derived from alignment at tig00000073_pilon:467136..468209+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCATTCGTCCCTCCCATACCCACGTCTCACTTTGGCACTCGCACCGG
CTATGCTACAATCTCCAATCACCCGTCTATATCCAGGATTCGTCGTGGTC
GCGCATCAACATTGATATTTTCCTCCGCCACCAATCCGGCCGATACCCAA
CCCCCAACCGAGGTCAAACAAAGCTTCGCCCCGCCACCTTCGACATTCTA
TCAGGCTATAACACAGGCTCAGCAAGCAGCGGCTGATGCCATAAAAGCTG
GTTTCCGTGTCCTCGAGGTTGAGTTTCCACCTCTTCCTACTGCACAGTTG
GAAAGTTCTGCTGTCGGCGCTTACGACGTTTCAGACGCCAATCTTCGTCT
TGCTATTGACTTCTCTTCCAAATTTGCAGGCGAAGGGAAACGTGTTGCGA
TTGCGTTTCCAGATCTTATTGAGAAAGACCGAGCGGTTGAGCTGAACAAT
GAGAGCGAGGAGCCTATTGAAAACGTTCGTTTCAGTGCCGTGAGAGATTC
GAAGAAAGGCGCGTTTTTAGAGCGTCTTTGGGTTAAGCCCGAGGTTGAAA
TCGCTGTCAGAGACGAAGATGACATTTTTCTCGTACTAGGGTCTTCATGT
CAGGAGTTACCGGATGTCGAACGGCTTGTTGAAGCTGTGGGAGAGCGTCC
CGTTATTCTTTTCAATCTCAAGTTGGATTCAGCACGGGGAGATCTTGGGC
TCCCTGCATTTCCTCGAAAGGATCTCCATTATCGTTTTCTCAGCAAGATC
TTGCCCGTATACTACTTACGAACGCGTACGTATTCCAGATCAATAATCCG
ACCTCCTTACGTAGTTAATTTCTCTGGTGCGCTATACAAGGTTTTTCCTG
GCCCGTACCAAGTTTTGCTGGACACTGCTGCTGGAAACTATGAGCGGTTA
ACCACATTAGAAGAACGGCCGCCATTGGGACAGGTTAGGGATATTTTGAC
AGACGGATTGAAGATGGAAGGTGTAGCAGGGAAGGAAGCTTCCCTCCTAT
CAAAAGGGTACAAATCAATGACTTGGTGGGAAGAAGATCGATCAAAGGCA
GTGTCTCAGAACTGGCGATCGTAG

protein sequence of Ggra7934.t1

>Ggra7934.t1 ID=Ggra7934.t1|Name=Ggra7934.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=358bp
MAFVPPIPTSHFGTRTGYATISNHPSISRIRRGRASTLIFSSATNPADTQ
PPTEVKQSFAPPPSTFYQAITQAQQAAADAIKAGFRVLEVEFPPLPTAQL
ESSAVGAYDVSDANLRLAIDFSSKFAGEGKRVAIAFPDLIEKDRAVELNN
ESEEPIENVRFSAVRDSKKGAFLERLWVKPEVEIAVRDEDDIFLVLGSSC
QELPDVERLVEAVGERPVILFNLKLDSARGDLGLPAFPRKDLHYRFLSKI
LPVYYLRTRTYSRSIIRPPYVVNFSGALYKVFPGPYQVLLDTAAGNYERL
TTLEERPPLGQVRDILTDGLKMEGVAGKEASLLSKGYKSMTWWEEDRSKA
VSQNWRS*

mRNA from alignment at tig00000073_pilon:467136..468209+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra7934.t1 ID=Ggra7934.t1|Name=Ggra7934.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1074bp|location=Sequence derived from alignment at tig00000073_pilon:467136..468209+ (Gracilaria gracilis GNS1m male)
ATGGCATTCGTCCCTCCCATACCCACGTCTCACTTTGGCACTCGCACCGG
CTATGCTACAATCTCCAATCACCCGTCTATATCCAGGATTCGTCGTGGTC
GCGCATCAACATTGATATTTTCCTCCGCCACCAATCCGGCCGATACCCAA
CCCCCAACCGAGGTCAAACAAAGCTTCGCCCCGCCACCTTCGACATTCTA
TCAGGCTATAACACAGGCTCAGCAAGCAGCGGCTGATGCCATAAAAGCTG
GTTTCCGTGTCCTCGAGGTTGAGTTTCCACCTCTTCCTACTGCACAGTTG
GAAAGTTCTGCTGTCGGCGCTTACGACGTTTCAGACGCCAATCTTCGTCT
TGCTATTGACTTCTCTTCCAAATTTGCAGGCGAAGGGAAACGTGTTGCGA
TTGCGTTTCCAGATCTTATTGAGAAAGACCGAGCGGTTGAGCTGAACAAT
GAGAGCGAGGAGCCTATTGAAAACGTTCGTTTCAGTGCCGTGAGAGATTC
GAAGAAAGGCGCGTTTTTAGAGCGTCTTTGGGTTAAGCCCGAGGTTGAAA
TCGCTGTCAGAGACGAAGATGACATTTTTCTCGTACTAGGGTCTTCATGT
CAGGAGTTACCGGATGTCGAACGGCTTGTTGAAGCTGTGGGAGAGCGTCC
CGTTATTCTTTTCAATCTCAAGTTGGATTCAGCACGGGGAGATCTTGGGC
TCCCTGCATTTCCTCGAAAGGATCTCCATTATCGTTTTCTCAGCAAGATC
TTGCCCGTATACTACTTACGAACGCGTACGTATTCCAGATCAATAATCCG
ACCTCCTTACGTAGTTAATTTCTCTGGTGCGCTATACAAGGTTTTTCCTG
GCCCGTACCAAGTTTTGCTGGACACTGCTGCTGGAAACTATGAGCGGTTA
ACCACATTAGAAGAACGGCCGCCATTGGGACAGGTTAGGGATATTTTGAC
AGACGGATTGAAGATGGAAGGTGTAGCAGGGAAGGAAGCTTCCCTCCTAT
CAAAAGGGTACAAATCAATGACTTGGTGGGAAGAAGATCGATCAAAGGCA
GTGTCTCAGAACTGGCGATCGTAG

Coding sequence (CDS) from alignment at tig00000073_pilon:467136..468209+

>Ggra7934.t1 ID=Ggra7934.t1|Name=Ggra7934.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1074bp|location=Sequence derived from alignment at tig00000073_pilon:467136..468209+ (Gracilaria gracilis GNS1m male)
ATGGCATTCGTCCCTCCCATACCCACGTCTCACTTTGGCACTCGCACCGG
CTATGCTACAATCTCCAATCACCCGTCTATATCCAGGATTCGTCGTGGTC
GCGCATCAACATTGATATTTTCCTCCGCCACCAATCCGGCCGATACCCAA
CCCCCAACCGAGGTCAAACAAAGCTTCGCCCCGCCACCTTCGACATTCTA
TCAGGCTATAACACAGGCTCAGCAAGCAGCGGCTGATGCCATAAAAGCTG
GTTTCCGTGTCCTCGAGGTTGAGTTTCCACCTCTTCCTACTGCACAGTTG
GAAAGTTCTGCTGTCGGCGCTTACGACGTTTCAGACGCCAATCTTCGTCT
TGCTATTGACTTCTCTTCCAAATTTGCAGGCGAAGGGAAACGTGTTGCGA
TTGCGTTTCCAGATCTTATTGAGAAAGACCGAGCGGTTGAGCTGAACAAT
GAGAGCGAGGAGCCTATTGAAAACGTTCGTTTCAGTGCCGTGAGAGATTC
GAAGAAAGGCGCGTTTTTAGAGCGTCTTTGGGTTAAGCCCGAGGTTGAAA
TCGCTGTCAGAGACGAAGATGACATTTTTCTCGTACTAGGGTCTTCATGT
CAGGAGTTACCGGATGTCGAACGGCTTGTTGAAGCTGTGGGAGAGCGTCC
CGTTATTCTTTTCAATCTCAAGTTGGATTCAGCACGGGGAGATCTTGGGC
TCCCTGCATTTCCTCGAAAGGATCTCCATTATCGTTTTCTCAGCAAGATC
TTGCCCGTATACTACTTACGAACGCGTACGTATTCCAGATCAATAATCCG
ACCTCCTTACGTAGTTAATTTCTCTGGTGCGCTATACAAGGTTTTTCCTG
GCCCGTACCAAGTTTTGCTGGACACTGCTGCTGGAAACTATGAGCGGTTA
ACCACATTAGAAGAACGGCCGCCATTGGGACAGGTTAGGGATATTTTGAC
AGACGGATTGAAGATGGAAGGTGTAGCAGGGAAGGAAGCTTCCCTCCTAT
CAAAAGGGTACAAATCAATGACTTGGTGGGAAGAAGATCGATCAAAGGCA
GTGTCTCAGAACTGGCGATCGTAG