Ggra7915.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7915.t1
Unique NameGgra7915.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length109
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000073_piloncontigtig00000073_pilon:428959..429451 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMJ212CT
Preferred nameCYCS
PFAMsCytochrom_C
Max annot lvl2759|Eukaryota
KEGG rclassRC03151,RC03152
KEGG koko:K08738
KEGG TC3.D.4.6
KEGG ReactionR10151
KEGG Pathwayko00920,ko01100,ko01120,ko01524,ko02020,ko04115,ko04210,ko04214,ko04215,ko04932,ko05010,ko05012,ko05014,ko05016,ko05134,ko05145,ko05152,ko05161,ko05164,ko05167,ko05168,ko05200,ko05210,ko05222,ko05416,map00920,map01100,map01120,map01524,map02020,map04115,map04210,map04214,map04215,map04932,map05010,map05012,map05014,map05016,map05134,map05145,map05152,map05161,map05164,map05167,map05168,map05200,map05210,map05222,map05416
KEGG ModuleM00595
GOsGO:0000003,GO:0000159,GO:0002931,GO:0003006,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005758,GO:0005829,GO:0006091,GO:0006119,GO:0006122,GO:0006123,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006915,GO:0006919,GO:0006950,GO:0006979,GO:0006996,GO:0007005,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007291,GO:0007349,GO:0008150,GO:0008152,GO:0008219,GO:0008287,GO:0008635,GO:0009055,GO:0009060,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009628,GO:0009629,GO:0009636,GO:0009653,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010310,GO:0010604,GO:0010646,GO:0010647,GO:0010727,GO:0010728,GO:0010730,GO:0010941,GO:0010942,GO:0010950,GO:0010952,GO:0012501,GO:0015980,GO:0016020,GO:0016043,GO:0016310,GO:0016491,GO:0016999,GO:0017144,GO:0019222,GO:0019637,GO:0019646,GO:0019693,GO:0019866,GO:0019899,GO:0019953,GO:0020037,GO:0022412,GO:0022414,GO:0022603,GO:0022900,GO:0022904,GO:0023051,GO:0023052,GO:0023056,GO:0030154,GO:0030162,GO:0031090,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031966,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033554,GO:0034349,GO:0034465,GO:0034599,GO:0034641,GO:0035556,GO:0042221,GO:0042493,GO:0042743,GO:0042773,GO:0042775,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043209,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043280,GO:0043281,GO:0043457,GO:0043467,GO:0044093,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044703,GO:0045155,GO:0045333,GO:0045595,GO:0045862,GO:0046034,GO:0046483,GO:0046668,GO:0046669,GO:0046688,GO:0046906,GO:0048037,GO:0048232,GO:0048468,GO:0048515,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051186,GO:0051193,GO:0051195,GO:0051239,GO:0051246,GO:0051247,GO:0051336,GO:0051345,GO:0051704,GO:0051716,GO:0052547,GO:0052548,GO:0055086,GO:0055114,GO:0060255,GO:0060284,GO:0065007,GO:0065009,GO:0070013,GO:0070469,GO:0070887,GO:0071704,GO:0071840,GO:0072521,GO:0072593,GO:0080090,GO:0097159,GO:0097190,GO:0097193,GO:1901135,GO:1901360,GO:1901363,GO:1901564,GO:1901700,GO:1901857,GO:1902494,GO:1902531,GO:1902533,GO:1903293,GO:1903426,GO:1903427,GO:2000026,GO:2000027,GO:2000116,GO:2000377,GO:2000378,GO:2001056,GO:2001233,GO:2001235,GO:2001242,GO:2001244
Evalue7.04e-53
EggNOG OGsCOG3474@1|root,KOG3453@2759|Eukaryota
Descriptionelectron transfer activity
COG categoryC
BiGG ReactioniMM904.YJR048W
BRITEko00000,ko00001,ko00002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7915Ggra7915Gracilaria gracilis GNS1m malegenetig00000073_pilon 428959..429451 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7915.t1Ggra7915.t1Gracilaria gracilis GNS1m malepolypeptidetig00000073_pilon 428959..429451 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7915.t1.stop1Ggra7915.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000073_pilon 428959..428961 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7915.t1.CDS1Ggra7915.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000073_pilon 428959..429212 -
Ggra7915.t1.CDS2Ggra7915.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000073_pilon 429379..429451 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7915.t1.exon1Ggra7915.t1.exon1Gracilaria gracilis GNS1m maleexontig00000073_pilon 428959..429212 -
Ggra7915.t1.exon2Ggra7915.t1.exon2Gracilaria gracilis GNS1m maleexontig00000073_pilon 429379..429451 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7915.t1.intron1Ggra7915.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000073_pilon 429213..429378 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7915.t1.start1Ggra7915.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000073_pilon 429449..429451 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7915.t1 ID=Ggra7915.t1|Name=Ggra7915.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=109bp
MGAPGGDVNKGAKLFKTKCSQCHTYEQGGSTKQGPNLWGLFGRTAGTVDG
FAYTAANKNSGIIWGDQTLFDYLLNPKKYIKGTKMVFAGLKKEKDRHDLI
AFLKANTQ*
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spliced messenger RNA

>Ggra7915.t1 ID=Ggra7915.t1|Name=Ggra7915.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=327bp|location=Sequence derived from alignment at tig00000073_pilon:428959..429451- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGCTCCAGGCGGTGATGTCAATAAGGGAGCCAAGCTCTTCAAGAC
AAAATGCTCCCAATGTCATACCTACGAACAAGGAGGCAGTACCAAGCAAG
GACCTAATCTGTGGGGTCTGTTCGGTCGCACAGCCGGTACCGTAGATGGC
TTCGCCTACACCGCTGCCAACAAGAACTCCGGTATCATATGGGGTGATCA
GACCCTGTTTGACTACTTGCTCAACCCCAAAAAGTACATCAAGGGAACTA
AGATGGTTTTCGCTGGGTTGAAGAAAGAAAAGGATCGTCACGATCTTATT
GCATTTCTCAAGGCTAACACTCAATAA
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protein sequence of Ggra7915.t1

>Ggra7915.t1 ID=Ggra7915.t1|Name=Ggra7915.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=109bp
MGAPGGDVNKGAKLFKTKCSQCHTYEQGGSTKQGPNLWGLFGRTAGTVDG
FAYTAANKNSGIIWGDQTLFDYLLNPKKYIKGTKMVFAGLKKEKDRHDLI
AFLKANTQ*
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mRNA from alignment at tig00000073_pilon:428959..429451-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7915.t1 ID=Ggra7915.t1|Name=Ggra7915.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=493bp|location=Sequence derived from alignment at tig00000073_pilon:428959..429451- (Gracilaria gracilis GNS1m male)
ATGGGCGCTCCAGGCGGTGATGTCAATAAGGGAGCCAAGCTCTTCAAGAC
AAAATGCTCCCAATGTCATACCTGTACGTTTTCACGTTTGATTCATCTCC
GTGACACATTTCAGTTTCATCACTGCGTGCGCAACTGATGCTGACAACAA
GATCGCAATCATCCCCAACGTATCGCCGCGTGTTGCTGCTCGACCAAATG
TTCCGCGCTCAAACTGTGCTTTGCGCATCGCATCCACAGACGAACAAGGA
GGCAGTACCAAGCAAGGACCTAATCTGTGGGGTCTGTTCGGTCGCACAGC
CGGTACCGTAGATGGCTTCGCCTACACCGCTGCCAACAAGAACTCCGGTA
TCATATGGGGTGATCAGACCCTGTTTGACTACTTGCTCAACCCCAAAAAG
TACATCAAGGGAACTAAGATGGTTTTCGCTGGGTTGAAGAAAGAAAAGGA
TCGTCACGATCTTATTGCATTTCTCAAGGCTAACACTCAATAA
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Coding sequence (CDS) from alignment at tig00000073_pilon:428959..429451-

>Ggra7915.t1 ID=Ggra7915.t1|Name=Ggra7915.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=327bp|location=Sequence derived from alignment at tig00000073_pilon:428959..429451- (Gracilaria gracilis GNS1m male)
ATGGGCGCTCCAGGCGGTGATGTCAATAAGGGAGCCAAGCTCTTCAAGAC
AAAATGCTCCCAATGTCATACCTACGAACAAGGAGGCAGTACCAAGCAAG
GACCTAATCTGTGGGGTCTGTTCGGTCGCACAGCCGGTACCGTAGATGGC
TTCGCCTACACCGCTGCCAACAAGAACTCCGGTATCATATGGGGTGATCA
GACCCTGTTTGACTACTTGCTCAACCCCAAAAAGTACATCAAGGGAACTA
AGATGGTTTTCGCTGGGTTGAAGAAAGAAAAGGATCGTCACGATCTTATT
GCATTTCTCAAGGCTAACACTCAATAA
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