Ggra7909.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra7909.t1
Unique NameGgra7909.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length186
Homology
BLAST of Ggra7909.t1 vs. uniprot
Match: A0A2V3J547 (Small nuclear ribonucleoprotein-associated protein B n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J547_9FLOR)

HSP 1 Score: 238 bits (606), Expect = 3.490e-77
Identity = 133/197 (67.51%), Postives = 148/197 (75.13%), Query Frame = 0
Query:    1 MLQFINYRVRVTLDDRRTLVGRFLAFDKHMNVVLSDCEEFRKPKKTQKDQRRALGLILLRGESVVSMAVESPPAPKKGKRSATAAGLPISERAPPGRGDALGALAGPAPGLGGPAQPQLAAQPRMYAP------------PPYGRGVAXXXXXXXXXXXXYAPPPPTGAVGMAGVTDVMGNNARPMGYGRGAPPPSG 185
            MLQFINYRVRVTLDDRRTLVGRFLAFDKHMN+VLSDCEEFRK KKTQKD+RRALGL+LLRGE VVSMAVE+ PAPKKGKR+ATAAGLP+++RA PGRG+ + AL  PA GLGGPAQPQL+AQPRMYAP            PPYGRGV     X        APPP        G+TDV  +  R M +GRG PPP+G
Sbjct:    9 MLQFINYRVRVTLDDRRTLVGRFLAFDKHMNIVLSDCEEFRKAKKTQKDERRALGLLLLRGECVVSMAVENAPAPKKGKRTATAAGLPVADRAAPGRGEVMAALNAPAQGLGGPAQPQLSAQPRMYAPLPGAYPGSGVAPPPYGRGVLPAAYXTAA-----APPP-------RGMTDVAMSGGRGMPFGRGVPPPNG 193          
BLAST of Ggra7909.t1 vs. uniprot
Match: A0A7S0BJ51 (Hypothetical protein n=3 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BJ51_9RHOD)

HSP 1 Score: 135 bits (341), Expect = 3.490e-36
Identity = 80/160 (50.00%), Postives = 103/160 (64.38%), Query Frame = 0
Query:    1 MLQFINYRVRVTLDDRRTLVGRFLAFDKHMNVVLSDCEEFRKPKKTQKDQRRALGLILLRGESVVSMAVESPPAPKKGKRSATAAG-LPISERAPPGRGDALG--------ALAGPAPGLGGPA----QPQLAAQPRMYA-----------PPPYGRGVA 136
            MLQ++NYR+RVTLDD R LVG+FLAFDKHMN+VL +CEE++K KK   ++ R+LGLILLRGE VVS+ VESPPA +  ++ ++  G  P     P GRG   G         L+GP  G+GGPA    QP ++AQP+MY            PP YG G+A
Sbjct:   37 MLQYVNYRMRVTLDDGRMLVGKFLAFDKHMNLVLGNCEEWKKSKKKDTEEMRSLGLILLRGECVVSLTVESPPAEQDSRKRSSGKGPAPQGRGMPAGRGIPQGPPPGAPPVGLSGPVRGVGGPAPTTMQPHVSAQPQMYGGRGGSQMGAPGPPGYGGGMA 196          
BLAST of Ggra7909.t1 vs. uniprot
Match: A0A0D3DF66 (Small nuclear ribonucleoprotein-associated protein n=3 Tax=Brassica TaxID=3705 RepID=A0A0D3DF66_BRAOL)

HSP 1 Score: 130 bits (326), Expect = 4.180e-34
Identity = 89/205 (43.41%), Postives = 111/205 (54.15%), Query Frame = 0
Query:    1 MLQFINYRVRVTLDDRRTLVGRFLAFDKHMNVVLSDCEEFRK--PKKTQK-----DQRRALGLILLRGESVVSMAVESPPAPKKGKRSATAAGLPISERAPPGRGDALG-------------ALAGPAPGLGGPA----QPQLAAQP------RMYAPPPYGRGVAXXXXXXXXXXXXYAPPPPTGAVGMAGVTDVMGNNARPMG 175
            MLQFINYR+RVT+ D R L+G+F+AFD+HMN+VL DCEEFRK  P K +K     + RR LGL+LLRGE V+S+ VE PP P++ +  A  +G  +   A PG G A G              LAGP  G+GGPA    QPQ++  P      +M  PPP GRG+               PPPP G     G         RPMG
Sbjct:    9 MLQFINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKINEEREDRRTLGLVLLRGEEVISITVEGPPPPEESRAKAGGSGGAV---AGPGMGRAAGRGVPTGPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVMRPPGQMLPPPPMGRGLPQ------------GPPPPYGMRPQFGGPXXXXYGQRPMG 198          
BLAST of Ggra7909.t1 vs. uniprot
Match: M2XN13 (Small nuclear ribonucleoprotein B and B n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XN13_GALSU)

HSP 1 Score: 129 bits (323), Expect = 4.630e-34
Identity = 72/144 (50.00%), Postives = 93/144 (64.58%), Query Frame = 0
Query:    1 MLQFINYRVRVTLDDRRTLVGRFLAFDKHMNVVLSDCEEFRKPKKTQKDQRRALGLILLRGESVVSMAVESPPAPKKGKRSATAAGLPISERAPPGRGDALG--------ALAGPAPGLGGPAQPQLAAQPRMYAPPPYGRGVA 136
            +LQ+INYR+RV+LDD+R +VG+ LAFDKH+N+VL+DCEEFRK KK  K+++RALGL+LLRGESV++M VESPP  +  ++ A     P     P GR   +          LAGP  G+GGP  PQ  A       P  GRG A
Sbjct:    9 LLQYINYRLRVSLDDQRVIVGQLLAFDKHLNLVLNDCEEFRKLKKQDKEEKRALGLVLLRGESVITMTVESPPPEQTTRKPAQRGPAPTGRGFPAGRAMPMAPPPAAVPAGLAGPVRGIGGPPPPQGRA-----VAPTIGRGAA 147          
BLAST of Ggra7909.t1 vs. uniprot
Match: small nuclear ribonucleoprotein-associated proteins B and B'-like n=4 Tax=Proteaceae TaxID=4328 RepID=UPI001C4E8A0F (small nuclear ribonucleoprotein-associated proteins B and B'-like n=4 Tax=Proteaceae TaxID=4328 RepID=UPI001C4E8A0F)

HSP 1 Score: 127 bits (320), Expect = 6.890e-33
Identity = 75/152 (49.34%), Postives = 96/152 (63.16%), Query Frame = 0
Query:    1 MLQFINYRVRVTLDDRRTLVGRFLAFDKHMNVVLSDCEEFRK------PKKTQKDQRRALGLILLRGESVVSMAVESPPAPKKGKRSATAAGLPISERAPPGRGDALG-------------ALAGPAPGLGGPA----QPQLAAQPRMYAPP 129
            MLQ+INYR+RVT+ D R LVG+F+AFD+HMN+VL DCEEFRK       K  ++++RR LGL+LLRGE VVSM VE PP P++ +  A  A    +  A PG G A G              LAGP  G+GGPA    QPQ++  P++ APP
Sbjct:    9 MLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNEEREERRTLGLVLLRGEEVVSMTVEGPPPPEESRAKAVGA----AAMAGPGLGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPASNMMQPQISRPPQLSAPP 156          
BLAST of Ggra7909.t1 vs. uniprot
Match: A0A2I4FNI2 (Small nuclear ribonucleoprotein-associated protein n=4 Tax=Fagales TaxID=3502 RepID=A0A2I4FNI2_JUGRE)

HSP 1 Score: 127 bits (319), Expect = 8.450e-33
Identity = 76/151 (50.33%), Postives = 95/151 (62.91%), Query Frame = 0
Query:    1 MLQFINYRVRVTLDDRRTLVGRFLAFDKHMNVVLSDCEEFRK-----PKKTQKDQRRALGLILLRGESVVSMAVESPPAPKKGKRSATAAGLPISERAPPGRGDALG-------------ALAGPAPGLGGPA----QPQLAAQPRMYAPP 129
            MLQ+INYR+RVT+ D R LVG+F+AFD+HMN+VL DCEEFRK      KKT  + RR LGL+LLRGE V+SM VE PP P++ +  A  A    +  A PG G A G              LAGP  G+GGPA    QPQ  ++P++ APP
Sbjct:    9 MLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTDNEDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVNA----AAMAGPGIGRAAGRGIPTAPLIQAQPGLAGPVRGVGGPAPGMMQPQQMSRPQLSAPP 155          
BLAST of Ggra7909.t1 vs. uniprot
Match: A0A2G2YXL6 (Small nuclear ribonucleoprotein-associated protein n=13 Tax=Solanaceae TaxID=4070 RepID=A0A2G2YXL6_CAPAN)

HSP 1 Score: 125 bits (314), Expect = 1.970e-32
Identity = 73/147 (49.66%), Postives = 93/147 (63.27%), Query Frame = 0
Query:    1 MLQFINYRVRVTLDDRRTLVGRFLAFDKHMNVVLSDCEEFRK-----PKKTQKDQRRALGLILLRGESVVSMAVESPPAPKKGKRSATAAGLPISERAPPGRGDALG-------------ALAGPAPGLGGPAQPQLAAQPRMYAPP 129
            MLQ+INYR+RVT+ D R L+G+F+AFD+HMN+VL DCEEFRK       K +++ RR LGL+LLRGE V+SM VE PP P + +  ATAAG  +S    PG G A G              LAGP  G+GGPA   +  QP++  PP
Sbjct:    9 MLQYINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPTKGSKEEREDRRTLGLVLLRGEEVISMTVEGPPPPDESRVKATAAGSAVSG---PGIGRAAGRGVPTGPMVHAQPGLAGPVRGVGGPAPGMM--QPQLSRPP 150          
BLAST of Ggra7909.t1 vs. uniprot
Match: A0A328DKI1 (Small nuclear ribonucleoprotein-associated protein n=2 Tax=Cuscuta sect. Cleistogrammica TaxID=1824901 RepID=A0A328DKI1_9ASTE)

HSP 1 Score: 125 bits (314), Expect = 4.470e-32
Identity = 78/153 (50.98%), Postives = 95/153 (62.09%), Query Frame = 0
Query:    1 MLQFINYRVRVTLDDRRTLVGRFLAFDKHMNVVLSDCEEFRK-----PKKTQKDQRRALGLILLRGESVVSMAVESPPAPKKGKRSATAAGLPISERAPPGRGDALG-------------ALAGPAPGLGGPA----QPQLAA--QPRMYAPP 129
            MLQ+INYR+RVT+ D R L+G+F+AFD+HMN+VL DCEEFRK       K +++ RR LGLILLRGE VVSMAVE PP P + +  AT+A   +     PG G A G              LAGP  GLGGPA    QP LA    P++ APP
Sbjct:    9 MLQYINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPTKGSKEEREDRRTLGLILLRGEEVVSMAVEGPPPPDESRLKATSAANAVPG---PGMGRAAGRGVPTGPLVQAQPGLAGPVRGLGGPAPGMMQPHLARPPMPQVSAPP 158          
BLAST of Ggra7909.t1 vs. uniprot
Match: A0A5K0WUU8 (Sm domain-containing protein (Fragment) n=2 Tax=Nymphaea colorata TaxID=210225 RepID=A0A5K0WUU8_9MAGN)

HSP 1 Score: 125 bits (313), Expect = 4.640e-32
Identity = 77/150 (51.33%), Postives = 94/150 (62.67%), Query Frame = 0
Query:    1 MLQFINYRVRVTLDDRRTLVGRFLAFDKHMNVVLSDCEEFRK--PKKTQK----DQRRALGLILLRGESVVSMAVESPPAPKKGKRSATAAGLPISERAPPGRG-------DALGALAGPAPGLGGPA----QPQLAAQPRMY---APPP 130
            MLQFINYR+RVT+ D R LVG+F+AFD+HMN+VL DCEEFR+  P K QK    + RR LGL+LLRGE V+SM VE PP P++ +  +  AG         GRG        A   LAGP  G+GGPA    QPQ++  P  Y   APPP
Sbjct:    9 MLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRRLPPVKGQKGEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKSVVAGAGPGIGRAAGRGVPTAHLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVSYPQPAPPP 158          
BLAST of Ggra7909.t1 vs. uniprot
Match: A0A2G8LAV3 (Putative small nuclear ribonucleoprotein-associated protein B'-like n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8LAV3_STIJA)

HSP 1 Score: 122 bits (307), Expect = 6.980e-32
Identity = 81/147 (55.10%), Postives = 96/147 (65.31%), Query Frame = 0
Query:    1 MLQFINYRVRVTLDDRRTLVGRFLAFDKHMNVVLSDCEEFRKPK-KTQ---KDQRRALGLILLRGESVVSMAVESPPAPKKGKR---SATAAGLPISERA-----PPGRGDALGA---LAGPAPGLGGPAQPQLAAQPRMY--APPP 130
            MLQ +NYR+RV L D RT +G FLAFDKHMNVVL DCEEFRK K KT+   K+++R LGL+LLRGE +VSM VE PP   KG R       AG P + RA     PPG G  +GA   L GP  G+GGP+Q Q+ A P+ Y   PPP
Sbjct:    9 MLQHVNYRMRVILQDGRTFIGTFLAFDKHMNVVLGDCEEFRKMKQKTKSGDKEEKRTLGLVLLRGEHLVSMTVEGPPVQDKGPRVPLPGGGAGGPGTSRAVGRGMPPG-GPQMGAPPGLQGPVRGVGGPSQ-QIMAPPQQYRGGPPP 153          
The following BLAST results are available for this feature:
BLAST of Ggra7909.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J5473.490e-7767.51Small nuclear ribonucleoprotein-associated protein... [more]
A0A7S0BJ513.490e-3650.00Hypothetical protein n=3 Tax=Rhodosorus marinus Ta... [more]
A0A0D3DF664.180e-3443.41Small nuclear ribonucleoprotein-associated protein... [more]
M2XN134.630e-3450.00Small nuclear ribonucleoprotein B and B n=1 Tax=Ga... [more]
small nuclear ribonucleoprotein-associated proteins B and B'-like n=4 Tax=Proteaceae TaxID=4328 RepID=UPI001C4E8A0F6.890e-3349.34small nuclear ribonucleoprotein-associated protein... [more]
A0A2I4FNI28.450e-3350.33Small nuclear ribonucleoprotein-associated protein... [more]
A0A2G2YXL61.970e-3249.66Small nuclear ribonucleoprotein-associated protein... [more]
A0A328DKI14.470e-3250.98Small nuclear ribonucleoprotein-associated protein... [more]
A0A5K0WUU84.640e-3251.33Sm domain-containing protein (Fragment) n=2 Tax=Ny... [more]
A0A2G8LAV36.980e-3255.10Putative small nuclear ribonucleoprotein-associate... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 1..69
e-value: 4.1E-19
score: 79.5
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 3..68
e-value: 7.7E-20
score: 70.4
NoneNo IPR availableGENE3D2.30.30.100coord: 1..75
e-value: 3.9E-28
score: 99.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 69..118
NoneNo IPR availablePANTHERPTHR10701SMALL NUCLEAR RIBONUCLEOPROTEIN-ASSOCIATED PROTEIN B AND Ncoord: 1..184
NoneNo IPR availablePANTHERPTHR10701:SF0SMALL NUCLEAR RIBONUCLEOPROTEIN-ASSOCIATED PROTEIN B'coord: 1..184
NoneNo IPR availableCDDcd01717Sm_Bcoord: 1..70
e-value: 1.50787E-41
score: 132.675
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 1..73

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000073_piloncontigtig00000073_pilon:414921..415670 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7909.t1Ggra7909.t1Gracilaria gracilis GNS1m malemRNAtig00000073_pilon 414921..415670 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra7909.t1 ID=Ggra7909.t1|Name=Ggra7909.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=186bp
MLQFINYRVRVTLDDRRTLVGRFLAFDKHMNVVLSDCEEFRKPKKTQKDQ
RRALGLILLRGESVVSMAVESPPAPKKGKRSATAAGLPISERAPPGRGDA
LGALAGPAPGLGGPAQPQLAAQPRMYAPPPYGRGVAAPPFGRGVPPPAYA
PPPPTGAVGMAGVTDVMGNNARPMGYGRGAPPPSG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR010920LSM_dom_sf