Ggra7913.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra7913.t1
Unique Name	Ggra7913.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	354

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000073_pilon	contig	tig00000073_pilon:425545..426606 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1289387.AUKW01000026_gene4747
PFAMs	Trypsin
Max annot lvl	201174\|Actinobacteria
Evalue	2.44e-24
EggNOG OGs	COG5640@1\|root,COG5640@2\|Bacteria,2GN18@201174\|Actinobacteria
Description	PFAM peptidase S1 and S6, chymotrypsin Hap
COG category	O

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra7913	Ggra7913	Gracilaria gracilis GNS1m male	gene	tig00000073_pilon 425545..426606 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7913.t1.start1	Ggra7913.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000073_pilon 425545..425547 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7913.t1.CDS1	Ggra7913.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000073_pilon 425545..426606 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7913.t1.exon1	Ggra7913.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000073_pilon 425545..426606 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7913.t1.stop1	Ggra7913.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000073_pilon 426604..426606 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7913.t1	Ggra7913.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000073_pilon 425545..426606 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000073_pilon:425545..426606+
coding sequence from alignment at tig00000073_pilon:425545..426606+

mRNA sequence

>Ggra7913.t1 ID=Ggra7913.t1|Name=Ggra7913.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=354bp
MLLRSPLLATVAVYASSLLFLLSESAVVGKQENDSNLDKASSRVIHGVPV
TDQKEYPFVVDLSRHDIAISSTRFCTGTLVTPDIVLTAAHCVLNDGYDSP
VFATIGRIELEDKHSQNEHAQTFRTIASIPHPEYTGLGSPNDVALVILNE
SSSAPTVKLADSAPVKDDVAWVVGYGIQMLGTIEKSAQPIEVLSGRLQKT
ALRIEEKSFCDGSEGQWKTADGMICTAGVKEGSSACRGDSGGGLFLWEKS
AEKENEAVQVGVVSYGDAQCASEESGVFTDVASNLEWIKASAEKLQLAVF
PGQPGSQPQDTSAAEPRDVQLSVRADAAIGPEKANDRKFVPFPSTQPDEP
QTD*

spliced messenger RNA

>Ggra7913.t1 ID=Ggra7913.t1|Name=Ggra7913.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1062bp|location=Sequence derived from alignment at tig00000073_pilon:425545..426606+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCTTGCGTTCACCACTGCTTGCCACTGTTGCAGTTTACGCGTCATC
CCTCCTTTTCCTGCTTTCAGAATCTGCCGTTGTCGGCAAGCAGGAAAACG
ATTCCAACCTTGACAAGGCCTCATCCAGAGTTATTCACGGAGTGCCCGTA
ACTGATCAGAAAGAATACCCCTTCGTTGTCGATCTATCCCGGCACGACAT
CGCCATCTCATCAACTCGCTTTTGCACTGGCACTCTTGTCACTCCGGACA
TTGTTCTAACAGCAGCCCATTGTGTGCTCAACGATGGCTACGACTCCCCC
GTATTCGCAACTATTGGTCGTATAGAGCTTGAAGATAAGCATTCGCAGAA
CGAACACGCGCAGACATTCCGCACAATTGCAAGCATTCCCCATCCAGAGT
ATACTGGACTTGGTTCCCCGAACGACGTGGCATTGGTAATACTGAACGAA
TCCTCCTCCGCGCCTACTGTCAAGCTGGCAGACTCAGCTCCCGTAAAAGA
TGACGTTGCCTGGGTGGTGGGATATGGCATCCAGATGTTGGGCACAATTG
AAAAGTCTGCTCAACCAATAGAAGTTCTTTCCGGAAGGCTGCAGAAGACC
GCTCTTCGAATTGAAGAGAAGTCGTTTTGCGATGGTTCAGAGGGTCAATG
GAAGACCGCGGATGGCATGATTTGCACTGCTGGCGTAAAAGAAGGATCTT
CGGCTTGCCGCGGTGACTCAGGAGGAGGACTATTTTTGTGGGAGAAAAGT
GCGGAGAAGGAGAATGAAGCAGTTCAGGTTGGGGTGGTAAGCTACGGCGA
TGCTCAATGTGCATCGGAGGAATCCGGTGTGTTTACTGATGTAGCAAGCA
ATCTTGAATGGATCAAGGCGTCAGCTGAAAAACTGCAGTTAGCCGTGTTC
CCTGGCCAGCCTGGATCACAACCTCAAGATACATCGGCGGCTGAGCCGCG
AGATGTGCAGCTGAGCGTGAGAGCAGATGCGGCAATTGGGCCAGAGAAAG
CAAACGATAGGAAATTTGTACCCTTTCCATCGACACAACCTGACGAACCT
CAAACTGACTAA

protein sequence of Ggra7913.t1

>Ggra7913.t1 ID=Ggra7913.t1|Name=Ggra7913.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=354bp
MLLRSPLLATVAVYASSLLFLLSESAVVGKQENDSNLDKASSRVIHGVPV
TDQKEYPFVVDLSRHDIAISSTRFCTGTLVTPDIVLTAAHCVLNDGYDSP
VFATIGRIELEDKHSQNEHAQTFRTIASIPHPEYTGLGSPNDVALVILNE
SSSAPTVKLADSAPVKDDVAWVVGYGIQMLGTIEKSAQPIEVLSGRLQKT
ALRIEEKSFCDGSEGQWKTADGMICTAGVKEGSSACRGDSGGGLFLWEKS
AEKENEAVQVGVVSYGDAQCASEESGVFTDVASNLEWIKASAEKLQLAVF
PGQPGSQPQDTSAAEPRDVQLSVRADAAIGPEKANDRKFVPFPSTQPDEP
QTD*

mRNA from alignment at tig00000073_pilon:425545..426606+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra7913.t1 ID=Ggra7913.t1|Name=Ggra7913.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1062bp|location=Sequence derived from alignment at tig00000073_pilon:425545..426606+ (Gracilaria gracilis GNS1m male)
ATGCTCTTGCGTTCACCACTGCTTGCCACTGTTGCAGTTTACGCGTCATC
CCTCCTTTTCCTGCTTTCAGAATCTGCCGTTGTCGGCAAGCAGGAAAACG
ATTCCAACCTTGACAAGGCCTCATCCAGAGTTATTCACGGAGTGCCCGTA
ACTGATCAGAAAGAATACCCCTTCGTTGTCGATCTATCCCGGCACGACAT
CGCCATCTCATCAACTCGCTTTTGCACTGGCACTCTTGTCACTCCGGACA
TTGTTCTAACAGCAGCCCATTGTGTGCTCAACGATGGCTACGACTCCCCC
GTATTCGCAACTATTGGTCGTATAGAGCTTGAAGATAAGCATTCGCAGAA
CGAACACGCGCAGACATTCCGCACAATTGCAAGCATTCCCCATCCAGAGT
ATACTGGACTTGGTTCCCCGAACGACGTGGCATTGGTAATACTGAACGAA
TCCTCCTCCGCGCCTACTGTCAAGCTGGCAGACTCAGCTCCCGTAAAAGA
TGACGTTGCCTGGGTGGTGGGATATGGCATCCAGATGTTGGGCACAATTG
AAAAGTCTGCTCAACCAATAGAAGTTCTTTCCGGAAGGCTGCAGAAGACC
GCTCTTCGAATTGAAGAGAAGTCGTTTTGCGATGGTTCAGAGGGTCAATG
GAAGACCGCGGATGGCATGATTTGCACTGCTGGCGTAAAAGAAGGATCTT
CGGCTTGCCGCGGTGACTCAGGAGGAGGACTATTTTTGTGGGAGAAAAGT
GCGGAGAAGGAGAATGAAGCAGTTCAGGTTGGGGTGGTAAGCTACGGCGA
TGCTCAATGTGCATCGGAGGAATCCGGTGTGTTTACTGATGTAGCAAGCA
ATCTTGAATGGATCAAGGCGTCAGCTGAAAAACTGCAGTTAGCCGTGTTC
CCTGGCCAGCCTGGATCACAACCTCAAGATACATCGGCGGCTGAGCCGCG
AGATGTGCAGCTGAGCGTGAGAGCAGATGCGGCAATTGGGCCAGAGAAAG
CAAACGATAGGAAATTTGTACCCTTTCCATCGACACAACCTGACGAACCT
CAAACTGACTAA

Coding sequence (CDS) from alignment at tig00000073_pilon:425545..426606+

>Ggra7913.t1 ID=Ggra7913.t1|Name=Ggra7913.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1062bp|location=Sequence derived from alignment at tig00000073_pilon:425545..426606+ (Gracilaria gracilis GNS1m male)
ATGCTCTTGCGTTCACCACTGCTTGCCACTGTTGCAGTTTACGCGTCATC
CCTCCTTTTCCTGCTTTCAGAATCTGCCGTTGTCGGCAAGCAGGAAAACG
ATTCCAACCTTGACAAGGCCTCATCCAGAGTTATTCACGGAGTGCCCGTA
ACTGATCAGAAAGAATACCCCTTCGTTGTCGATCTATCCCGGCACGACAT
CGCCATCTCATCAACTCGCTTTTGCACTGGCACTCTTGTCACTCCGGACA
TTGTTCTAACAGCAGCCCATTGTGTGCTCAACGATGGCTACGACTCCCCC
GTATTCGCAACTATTGGTCGTATAGAGCTTGAAGATAAGCATTCGCAGAA
CGAACACGCGCAGACATTCCGCACAATTGCAAGCATTCCCCATCCAGAGT
ATACTGGACTTGGTTCCCCGAACGACGTGGCATTGGTAATACTGAACGAA
TCCTCCTCCGCGCCTACTGTCAAGCTGGCAGACTCAGCTCCCGTAAAAGA
TGACGTTGCCTGGGTGGTGGGATATGGCATCCAGATGTTGGGCACAATTG
AAAAGTCTGCTCAACCAATAGAAGTTCTTTCCGGAAGGCTGCAGAAGACC
GCTCTTCGAATTGAAGAGAAGTCGTTTTGCGATGGTTCAGAGGGTCAATG
GAAGACCGCGGATGGCATGATTTGCACTGCTGGCGTAAAAGAAGGATCTT
CGGCTTGCCGCGGTGACTCAGGAGGAGGACTATTTTTGTGGGAGAAAAGT
GCGGAGAAGGAGAATGAAGCAGTTCAGGTTGGGGTGGTAAGCTACGGCGA
TGCTCAATGTGCATCGGAGGAATCCGGTGTGTTTACTGATGTAGCAAGCA
ATCTTGAATGGATCAAGGCGTCAGCTGAAAAACTGCAGTTAGCCGTGTTC
CCTGGCCAGCCTGGATCACAACCTCAAGATACATCGGCGGCTGAGCCGCG
AGATGTGCAGCTGAGCGTGAGAGCAGATGCGGCAATTGGGCCAGAGAAAG
CAAACGATAGGAAATTTGTACCCTTTCCATCGACACAACCTGACGAACCT
CAAACTGACTAA