Ggra7920.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7920.t1
Unique NameGgra7920.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length528
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000073_piloncontigtig00000073_pilon:435019..436602 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D7FZ52
Preferred nameLAP
PFAMsPeptidase_M17,Peptidase_M17_N
Max annot lvl2759|Eukaryota
KEGG rclassRC00096,RC00141,RC02795
KEGG koko:K01255,ko:K03010
KEGG ReactionR00435,R00441,R00442,R00443,R00899,R04951
KEGG Pathwayko00230,ko00240,ko00480,ko01100,ko03020,ko05016,ko05169,map00230,map00240,map00480,map01100,map03020,map05016,map05169
KEGG ModuleM00180
GOsGO:0000287,GO:0003674,GO:0003824,GO:0004177,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005773,GO:0005829,GO:0006508,GO:0006807,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0008233,GO:0008238,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0010035,GO:0010038,GO:0010150,GO:0016043,GO:0016787,GO:0016805,GO:0019538,GO:0019904,GO:0022607,GO:0030145,GO:0032501,GO:0032502,GO:0034214,GO:0042221,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044238,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046686,GO:0046872,GO:0046914,GO:0048366,GO:0048367,GO:0048731,GO:0048827,GO:0048856,GO:0050896,GO:0051259,GO:0065003,GO:0070011,GO:0071704,GO:0071840,GO:0090693,GO:0097718,GO:0099402,GO:0140096,GO:1901564
Evalue7.35e-144
EggNOG OGsCOG0260@1|root,KOG2597@2759|Eukaryota
EC2.7.7.6,3.4.11.1
Descriptionmanganese ion binding
COG categoryE
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko01002,ko03021,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7920Ggra7920Gracilaria gracilis GNS1m malegenetig00000073_pilon 435019..436602 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7920.t1.start1Ggra7920.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000073_pilon 435019..435021 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7920.t1.CDS1Ggra7920.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000073_pilon 435019..436602 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7920.t1.exon1Ggra7920.t1.exon1Gracilaria gracilis GNS1m maleexontig00000073_pilon 435019..436602 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7920.t1.stop1Ggra7920.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000073_pilon 436600..436602 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7920.t1Ggra7920.t1Gracilaria gracilis GNS1m malepolypeptidetig00000073_pilon 435019..436602 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7920.t1 ID=Ggra7920.t1|Name=Ggra7920.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=528bp
MVLSTATDKPGVLDTDEKGSVLIFPREGRISLEIGSALEAYTGDLLVLAV
WAPEDDDAEFTLPSSLDKLDASVLNELSDLVSDSEFKAKSGSSTEVLRLA
GSGARRVALYGLGKKSKGTSSVAGASKFAVQKGMSINKCKSVGLYVDEAC
PESITNAAEGAVVASYVDVRYKKEKKDYDKVPQTVEMIGIPQSTDYQKAI
NRGRMIAMGIITTKELVNAPANVLTPETLAAAAEQVASEGGLDIKVMGRE
ACEELGMGCYLGVGRGSADEPKFIHITYKPSGEVKKRYCIVGKAVTFDTG
GTNLKVGNSMIELMKFDMGGAAVAVGAAKVIGSLKPEGVEVHFIMPAVEN
MIGNNAIHPGDILKAANDKTVEVINTDAEGRLCLADAIVYAQKLGDVDCV
VDIATLTGAIIVALGNDVAGFWSSSDKLADKLTESSEAVGEQLWRMPLVD
AYSEGLKSKIADLRNISKDRGGSSITAALFLKEFVDTKKSEWAHVDIAGT
VWSKEKGGATGYGVKTMVHWVENATAE*
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spliced messenger RNA

>Ggra7920.t1 ID=Ggra7920.t1|Name=Ggra7920.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1584bp|location=Sequence derived from alignment at tig00000073_pilon:435019..436602+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTTTGTCTACCGCCACGGACAAGCCGGGGGTGTTGGACACGGATGA
GAAAGGTAGCGTACTCATATTTCCGCGTGAAGGCCGTATTTCCCTCGAGA
TCGGCTCGGCCTTGGAGGCGTATACAGGAGATCTGCTCGTCTTGGCAGTT
TGGGCTCCCGAGGATGATGATGCCGAATTCACCCTCCCTTCATCGCTCGA
CAAGCTCGACGCGTCCGTTCTGAACGAACTTTCCGATCTCGTCTCGGACT
CGGAATTCAAGGCAAAGTCAGGATCCAGCACCGAGGTGCTGCGATTGGCC
GGCAGTGGCGCGAGGAGGGTAGCACTATACGGCCTCGGAAAGAAGAGCAA
AGGCACTTCTTCTGTCGCGGGAGCCTCCAAATTCGCCGTTCAGAAGGGCA
TGTCAATTAACAAGTGCAAGTCTGTCGGACTATATGTGGATGAAGCTTGT
CCCGAATCGATCACCAACGCTGCCGAAGGTGCTGTTGTGGCGTCGTATGT
GGACGTGAGATATAAGAAAGAGAAGAAAGATTATGATAAGGTGCCACAGA
CGGTTGAGATGATTGGCATCCCGCAGAGTACTGATTATCAAAAAGCTATT
AACAGGGGACGAATGATTGCCATGGGAATCATAACTACCAAGGAGCTTGT
TAACGCGCCTGCCAATGTGCTCACACCTGAAACACTGGCGGCGGCCGCGG
AACAAGTTGCATCCGAAGGCGGACTGGACATCAAGGTGATGGGTCGTGAG
GCGTGCGAAGAGTTGGGTATGGGGTGTTACCTCGGCGTTGGTAGAGGATC
GGCCGATGAACCGAAATTCATCCACATAACGTACAAACCAAGCGGCGAGG
TGAAGAAAAGGTATTGTATTGTGGGAAAGGCAGTGACGTTCGACACTGGT
GGTACCAACTTGAAGGTTGGAAACAGCATGATTGAACTTATGAAGTTCGA
CATGGGCGGAGCTGCTGTGGCTGTGGGTGCGGCTAAGGTGATTGGGAGCT
TGAAGCCAGAGGGCGTTGAAGTTCACTTCATTATGCCTGCTGTTGAAAAT
ATGATTGGGAACAATGCGATCCACCCCGGCGATATTTTGAAGGCTGCGAA
TGACAAGACGGTTGAAGTGATCAATACAGATGCGGAGGGAAGGTTATGTC
TTGCTGATGCGATTGTGTACGCGCAAAAGCTGGGGGATGTTGATTGCGTG
GTAGATATTGCGACTTTGACAGGGGCGATCATTGTGGCACTTGGAAATGA
CGTGGCTGGGTTTTGGAGCTCGTCTGACAAACTGGCAGACAAGCTCACGG
AGAGTAGTGAGGCTGTGGGAGAGCAGCTGTGGAGAATGCCGTTGGTTGAC
GCGTATAGTGAGGGGCTGAAAAGTAAGATCGCGGATCTGAGAAACATTTC
GAAGGACAGGGGCGGAAGTTCTATCACAGCAGCGCTATTCTTGAAAGAGT
TTGTGGACACTAAAAAGAGCGAGTGGGCACATGTGGACATTGCCGGAACG
GTTTGGAGCAAGGAGAAAGGTGGGGCCACTGGATATGGGGTGAAAACTAT
GGTGCACTGGGTGGAGAACGCAACGGCTGAATAA
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protein sequence of Ggra7920.t1

>Ggra7920.t1 ID=Ggra7920.t1|Name=Ggra7920.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=528bp
MVLSTATDKPGVLDTDEKGSVLIFPREGRISLEIGSALEAYTGDLLVLAV
WAPEDDDAEFTLPSSLDKLDASVLNELSDLVSDSEFKAKSGSSTEVLRLA
GSGARRVALYGLGKKSKGTSSVAGASKFAVQKGMSINKCKSVGLYVDEAC
PESITNAAEGAVVASYVDVRYKKEKKDYDKVPQTVEMIGIPQSTDYQKAI
NRGRMIAMGIITTKELVNAPANVLTPETLAAAAEQVASEGGLDIKVMGRE
ACEELGMGCYLGVGRGSADEPKFIHITYKPSGEVKKRYCIVGKAVTFDTG
GTNLKVGNSMIELMKFDMGGAAVAVGAAKVIGSLKPEGVEVHFIMPAVEN
MIGNNAIHPGDILKAANDKTVEVINTDAEGRLCLADAIVYAQKLGDVDCV
VDIATLTGAIIVALGNDVAGFWSSSDKLADKLTESSEAVGEQLWRMPLVD
AYSEGLKSKIADLRNISKDRGGSSITAALFLKEFVDTKKSEWAHVDIAGT
VWSKEKGGATGYGVKTMVHWVENATAE*
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mRNA from alignment at tig00000073_pilon:435019..436602+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7920.t1 ID=Ggra7920.t1|Name=Ggra7920.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1584bp|location=Sequence derived from alignment at tig00000073_pilon:435019..436602+ (Gracilaria gracilis GNS1m male)
ATGGTTTTGTCTACCGCCACGGACAAGCCGGGGGTGTTGGACACGGATGA
GAAAGGTAGCGTACTCATATTTCCGCGTGAAGGCCGTATTTCCCTCGAGA
TCGGCTCGGCCTTGGAGGCGTATACAGGAGATCTGCTCGTCTTGGCAGTT
TGGGCTCCCGAGGATGATGATGCCGAATTCACCCTCCCTTCATCGCTCGA
CAAGCTCGACGCGTCCGTTCTGAACGAACTTTCCGATCTCGTCTCGGACT
CGGAATTCAAGGCAAAGTCAGGATCCAGCACCGAGGTGCTGCGATTGGCC
GGCAGTGGCGCGAGGAGGGTAGCACTATACGGCCTCGGAAAGAAGAGCAA
AGGCACTTCTTCTGTCGCGGGAGCCTCCAAATTCGCCGTTCAGAAGGGCA
TGTCAATTAACAAGTGCAAGTCTGTCGGACTATATGTGGATGAAGCTTGT
CCCGAATCGATCACCAACGCTGCCGAAGGTGCTGTTGTGGCGTCGTATGT
GGACGTGAGATATAAGAAAGAGAAGAAAGATTATGATAAGGTGCCACAGA
CGGTTGAGATGATTGGCATCCCGCAGAGTACTGATTATCAAAAAGCTATT
AACAGGGGACGAATGATTGCCATGGGAATCATAACTACCAAGGAGCTTGT
TAACGCGCCTGCCAATGTGCTCACACCTGAAACACTGGCGGCGGCCGCGG
AACAAGTTGCATCCGAAGGCGGACTGGACATCAAGGTGATGGGTCGTGAG
GCGTGCGAAGAGTTGGGTATGGGGTGTTACCTCGGCGTTGGTAGAGGATC
GGCCGATGAACCGAAATTCATCCACATAACGTACAAACCAAGCGGCGAGG
TGAAGAAAAGGTATTGTATTGTGGGAAAGGCAGTGACGTTCGACACTGGT
GGTACCAACTTGAAGGTTGGAAACAGCATGATTGAACTTATGAAGTTCGA
CATGGGCGGAGCTGCTGTGGCTGTGGGTGCGGCTAAGGTGATTGGGAGCT
TGAAGCCAGAGGGCGTTGAAGTTCACTTCATTATGCCTGCTGTTGAAAAT
ATGATTGGGAACAATGCGATCCACCCCGGCGATATTTTGAAGGCTGCGAA
TGACAAGACGGTTGAAGTGATCAATACAGATGCGGAGGGAAGGTTATGTC
TTGCTGATGCGATTGTGTACGCGCAAAAGCTGGGGGATGTTGATTGCGTG
GTAGATATTGCGACTTTGACAGGGGCGATCATTGTGGCACTTGGAAATGA
CGTGGCTGGGTTTTGGAGCTCGTCTGACAAACTGGCAGACAAGCTCACGG
AGAGTAGTGAGGCTGTGGGAGAGCAGCTGTGGAGAATGCCGTTGGTTGAC
GCGTATAGTGAGGGGCTGAAAAGTAAGATCGCGGATCTGAGAAACATTTC
GAAGGACAGGGGCGGAAGTTCTATCACAGCAGCGCTATTCTTGAAAGAGT
TTGTGGACACTAAAAAGAGCGAGTGGGCACATGTGGACATTGCCGGAACG
GTTTGGAGCAAGGAGAAAGGTGGGGCCACTGGATATGGGGTGAAAACTAT
GGTGCACTGGGTGGAGAACGCAACGGCTGAATAA
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Coding sequence (CDS) from alignment at tig00000073_pilon:435019..436602+

>Ggra7920.t1 ID=Ggra7920.t1|Name=Ggra7920.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1584bp|location=Sequence derived from alignment at tig00000073_pilon:435019..436602+ (Gracilaria gracilis GNS1m male)
ATGGTTTTGTCTACCGCCACGGACAAGCCGGGGGTGTTGGACACGGATGA
GAAAGGTAGCGTACTCATATTTCCGCGTGAAGGCCGTATTTCCCTCGAGA
TCGGCTCGGCCTTGGAGGCGTATACAGGAGATCTGCTCGTCTTGGCAGTT
TGGGCTCCCGAGGATGATGATGCCGAATTCACCCTCCCTTCATCGCTCGA
CAAGCTCGACGCGTCCGTTCTGAACGAACTTTCCGATCTCGTCTCGGACT
CGGAATTCAAGGCAAAGTCAGGATCCAGCACCGAGGTGCTGCGATTGGCC
GGCAGTGGCGCGAGGAGGGTAGCACTATACGGCCTCGGAAAGAAGAGCAA
AGGCACTTCTTCTGTCGCGGGAGCCTCCAAATTCGCCGTTCAGAAGGGCA
TGTCAATTAACAAGTGCAAGTCTGTCGGACTATATGTGGATGAAGCTTGT
CCCGAATCGATCACCAACGCTGCCGAAGGTGCTGTTGTGGCGTCGTATGT
GGACGTGAGATATAAGAAAGAGAAGAAAGATTATGATAAGGTGCCACAGA
CGGTTGAGATGATTGGCATCCCGCAGAGTACTGATTATCAAAAAGCTATT
AACAGGGGACGAATGATTGCCATGGGAATCATAACTACCAAGGAGCTTGT
TAACGCGCCTGCCAATGTGCTCACACCTGAAACACTGGCGGCGGCCGCGG
AACAAGTTGCATCCGAAGGCGGACTGGACATCAAGGTGATGGGTCGTGAG
GCGTGCGAAGAGTTGGGTATGGGGTGTTACCTCGGCGTTGGTAGAGGATC
GGCCGATGAACCGAAATTCATCCACATAACGTACAAACCAAGCGGCGAGG
TGAAGAAAAGGTATTGTATTGTGGGAAAGGCAGTGACGTTCGACACTGGT
GGTACCAACTTGAAGGTTGGAAACAGCATGATTGAACTTATGAAGTTCGA
CATGGGCGGAGCTGCTGTGGCTGTGGGTGCGGCTAAGGTGATTGGGAGCT
TGAAGCCAGAGGGCGTTGAAGTTCACTTCATTATGCCTGCTGTTGAAAAT
ATGATTGGGAACAATGCGATCCACCCCGGCGATATTTTGAAGGCTGCGAA
TGACAAGACGGTTGAAGTGATCAATACAGATGCGGAGGGAAGGTTATGTC
TTGCTGATGCGATTGTGTACGCGCAAAAGCTGGGGGATGTTGATTGCGTG
GTAGATATTGCGACTTTGACAGGGGCGATCATTGTGGCACTTGGAAATGA
CGTGGCTGGGTTTTGGAGCTCGTCTGACAAACTGGCAGACAAGCTCACGG
AGAGTAGTGAGGCTGTGGGAGAGCAGCTGTGGAGAATGCCGTTGGTTGAC
GCGTATAGTGAGGGGCTGAAAAGTAAGATCGCGGATCTGAGAAACATTTC
GAAGGACAGGGGCGGAAGTTCTATCACAGCAGCGCTATTCTTGAAAGAGT
TTGTGGACACTAAAAAGAGCGAGTGGGCACATGTGGACATTGCCGGAACG
GTTTGGAGCAAGGAGAAAGGTGGGGCCACTGGATATGGGGTGAAAACTAT
GGTGCACTGGGTGGAGAACGCAACGGCTGAATAA
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