Ggra7933.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7933.t1
Unique NameGgra7933.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length406
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000073_piloncontigtig00000073_pilon:465446..466663 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704692.1
PFAMsGYR,YLP
Max annot lvl2759|Eukaryota
GOsGO:0003674,GO:0005488,GO:0005515
Evalue1.89e-26
EggNOG OGs2CKD8@1|root,2QVCG@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7933Ggra7933Gracilaria gracilis GNS1m malegenetig00000073_pilon 465446..466663 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7933.t1.stop1Ggra7933.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000073_pilon 465446..465448 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7933.t1.CDS1Ggra7933.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000073_pilon 465446..466663 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7933.t1.exon1Ggra7933.t1.exon1Gracilaria gracilis GNS1m maleexontig00000073_pilon 465446..466663 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7933.t1.start1Ggra7933.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000073_pilon 466661..466663 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7933.t1Ggra7933.t1Gracilaria gracilis GNS1m malepolypeptidetig00000073_pilon 465446..466663 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7933.t1 ID=Ggra7933.t1|Name=Ggra7933.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=406bp
MTRRVYAFFLLALALLVSVWGEEEVDLQSLSSAQLLDLEKKLNGEVADRT
KELNVIHDDIKRLKDEQAAVDEEAEHLQGAKEWELKEKEKREKELEAAKN
DVLAKQDSIARMSTQVASLKDNIQRFEARLQLLNQEKDSTEKRFQDPTLA
DVLESRSHNWGNVSRNLFNKTMTDVVPMFSDLSATARTYRRRVSRTSKFL
ELLTSLFIYAFMILAALSIYRIYTKVRGKLTIARMLFLGDVFCSCFWLVM
LICFVILFDDPLYIMKHRFPIAFFLFQLVACFSYVNFVLLRVLVLASKMT
FGALGETLGVVVVGHHYYVRVWQPAILDRPFRGTFFYYFCYCWMFGAFAY
SRIQEFAPLKQLRGPKLPPLMWLRVLLARFTARGVPDGDIENAPYEDSDD
EGHER*
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spliced messenger RNA

>Ggra7933.t1 ID=Ggra7933.t1|Name=Ggra7933.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1218bp|location=Sequence derived from alignment at tig00000073_pilon:465446..466663- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACACGCCGCGTCTATGCCTTCTTCCTTCTCGCGCTCGCGCTTCTTGT
TTCTGTATGGGGTGAAGAAGAAGTCGATCTACAGAGCCTATCATCTGCAC
AGCTGTTAGACCTAGAGAAGAAGCTAAACGGCGAGGTTGCTGATCGTACC
AAAGAACTCAATGTCATTCACGATGATATTAAGCGCCTTAAGGACGAACA
AGCCGCCGTAGACGAGGAGGCTGAGCATTTGCAAGGTGCCAAGGAGTGGG
AACTCAAGGAAAAGGAAAAGCGAGAAAAAGAGCTCGAGGCTGCCAAGAAT
GATGTCCTGGCAAAACAGGATTCCATTGCGAGAATGTCCACCCAGGTTGC
TTCCCTCAAGGACAACATTCAGAGGTTTGAAGCCCGCCTTCAACTTCTCA
ACCAGGAGAAGGATTCCACCGAGAAGAGGTTTCAGGACCCAACGCTTGCT
GATGTATTGGAATCGCGTTCGCACAATTGGGGCAATGTGTCGCGAAATCT
ATTCAACAAGACTATGACCGATGTTGTGCCAATGTTCTCTGATCTCTCCG
CAACAGCGCGCACTTATCGTCGTCGAGTCTCCCGAACTTCCAAGTTCCTT
GAACTGCTTACCTCCTTATTCATCTATGCGTTCATGATCCTCGCAGCGCT
TTCAATTTACAGAATATATACAAAAGTAAGAGGCAAGCTCACCATTGCGC
GGATGCTTTTCTTGGGTGATGTCTTTTGCTCTTGCTTCTGGCTTGTGATG
TTGATATGCTTCGTCATCTTGTTCGATGACCCTCTCTATATCATGAAGCA
TCGGTTCCCTATAGCGTTCTTCTTGTTTCAGTTGGTCGCATGCTTTTCGT
ACGTGAACTTTGTCTTGCTTCGTGTTCTTGTTTTGGCATCCAAGATGACC
TTTGGTGCTCTTGGGGAAACTTTAGGTGTTGTCGTTGTGGGTCATCACTA
CTACGTCAGGGTATGGCAACCTGCCATTCTTGACAGACCATTCCGGGGTA
CATTCTTTTATTACTTCTGTTACTGTTGGATGTTTGGCGCTTTTGCCTAC
AGCAGAATCCAAGAATTTGCTCCTCTTAAACAACTGAGAGGTCCGAAGCT
ACCACCCCTCATGTGGCTCCGAGTGCTACTCGCCAGATTTACTGCACGTG
GCGTACCAGACGGAGATATTGAGAATGCCCCTTACGAAGATTCAGATGAC
GAAGGTCATGAACGTTAA
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protein sequence of Ggra7933.t1

>Ggra7933.t1 ID=Ggra7933.t1|Name=Ggra7933.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=406bp
MTRRVYAFFLLALALLVSVWGEEEVDLQSLSSAQLLDLEKKLNGEVADRT
KELNVIHDDIKRLKDEQAAVDEEAEHLQGAKEWELKEKEKREKELEAAKN
DVLAKQDSIARMSTQVASLKDNIQRFEARLQLLNQEKDSTEKRFQDPTLA
DVLESRSHNWGNVSRNLFNKTMTDVVPMFSDLSATARTYRRRVSRTSKFL
ELLTSLFIYAFMILAALSIYRIYTKVRGKLTIARMLFLGDVFCSCFWLVM
LICFVILFDDPLYIMKHRFPIAFFLFQLVACFSYVNFVLLRVLVLASKMT
FGALGETLGVVVVGHHYYVRVWQPAILDRPFRGTFFYYFCYCWMFGAFAY
SRIQEFAPLKQLRGPKLPPLMWLRVLLARFTARGVPDGDIENAPYEDSDD
EGHER*
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mRNA from alignment at tig00000073_pilon:465446..466663-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7933.t1 ID=Ggra7933.t1|Name=Ggra7933.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1218bp|location=Sequence derived from alignment at tig00000073_pilon:465446..466663- (Gracilaria gracilis GNS1m male)
ATGACACGCCGCGTCTATGCCTTCTTCCTTCTCGCGCTCGCGCTTCTTGT
TTCTGTATGGGGTGAAGAAGAAGTCGATCTACAGAGCCTATCATCTGCAC
AGCTGTTAGACCTAGAGAAGAAGCTAAACGGCGAGGTTGCTGATCGTACC
AAAGAACTCAATGTCATTCACGATGATATTAAGCGCCTTAAGGACGAACA
AGCCGCCGTAGACGAGGAGGCTGAGCATTTGCAAGGTGCCAAGGAGTGGG
AACTCAAGGAAAAGGAAAAGCGAGAAAAAGAGCTCGAGGCTGCCAAGAAT
GATGTCCTGGCAAAACAGGATTCCATTGCGAGAATGTCCACCCAGGTTGC
TTCCCTCAAGGACAACATTCAGAGGTTTGAAGCCCGCCTTCAACTTCTCA
ACCAGGAGAAGGATTCCACCGAGAAGAGGTTTCAGGACCCAACGCTTGCT
GATGTATTGGAATCGCGTTCGCACAATTGGGGCAATGTGTCGCGAAATCT
ATTCAACAAGACTATGACCGATGTTGTGCCAATGTTCTCTGATCTCTCCG
CAACAGCGCGCACTTATCGTCGTCGAGTCTCCCGAACTTCCAAGTTCCTT
GAACTGCTTACCTCCTTATTCATCTATGCGTTCATGATCCTCGCAGCGCT
TTCAATTTACAGAATATATACAAAAGTAAGAGGCAAGCTCACCATTGCGC
GGATGCTTTTCTTGGGTGATGTCTTTTGCTCTTGCTTCTGGCTTGTGATG
TTGATATGCTTCGTCATCTTGTTCGATGACCCTCTCTATATCATGAAGCA
TCGGTTCCCTATAGCGTTCTTCTTGTTTCAGTTGGTCGCATGCTTTTCGT
ACGTGAACTTTGTCTTGCTTCGTGTTCTTGTTTTGGCATCCAAGATGACC
TTTGGTGCTCTTGGGGAAACTTTAGGTGTTGTCGTTGTGGGTCATCACTA
CTACGTCAGGGTATGGCAACCTGCCATTCTTGACAGACCATTCCGGGGTA
CATTCTTTTATTACTTCTGTTACTGTTGGATGTTTGGCGCTTTTGCCTAC
AGCAGAATCCAAGAATTTGCTCCTCTTAAACAACTGAGAGGTCCGAAGCT
ACCACCCCTCATGTGGCTCCGAGTGCTACTCGCCAGATTTACTGCACGTG
GCGTACCAGACGGAGATATTGAGAATGCCCCTTACGAAGATTCAGATGAC
GAAGGTCATGAACGTTAA
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Coding sequence (CDS) from alignment at tig00000073_pilon:465446..466663-

>Ggra7933.t1 ID=Ggra7933.t1|Name=Ggra7933.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1218bp|location=Sequence derived from alignment at tig00000073_pilon:465446..466663- (Gracilaria gracilis GNS1m male)
ATGACACGCCGCGTCTATGCCTTCTTCCTTCTCGCGCTCGCGCTTCTTGT
TTCTGTATGGGGTGAAGAAGAAGTCGATCTACAGAGCCTATCATCTGCAC
AGCTGTTAGACCTAGAGAAGAAGCTAAACGGCGAGGTTGCTGATCGTACC
AAAGAACTCAATGTCATTCACGATGATATTAAGCGCCTTAAGGACGAACA
AGCCGCCGTAGACGAGGAGGCTGAGCATTTGCAAGGTGCCAAGGAGTGGG
AACTCAAGGAAAAGGAAAAGCGAGAAAAAGAGCTCGAGGCTGCCAAGAAT
GATGTCCTGGCAAAACAGGATTCCATTGCGAGAATGTCCACCCAGGTTGC
TTCCCTCAAGGACAACATTCAGAGGTTTGAAGCCCGCCTTCAACTTCTCA
ACCAGGAGAAGGATTCCACCGAGAAGAGGTTTCAGGACCCAACGCTTGCT
GATGTATTGGAATCGCGTTCGCACAATTGGGGCAATGTGTCGCGAAATCT
ATTCAACAAGACTATGACCGATGTTGTGCCAATGTTCTCTGATCTCTCCG
CAACAGCGCGCACTTATCGTCGTCGAGTCTCCCGAACTTCCAAGTTCCTT
GAACTGCTTACCTCCTTATTCATCTATGCGTTCATGATCCTCGCAGCGCT
TTCAATTTACAGAATATATACAAAAGTAAGAGGCAAGCTCACCATTGCGC
GGATGCTTTTCTTGGGTGATGTCTTTTGCTCTTGCTTCTGGCTTGTGATG
TTGATATGCTTCGTCATCTTGTTCGATGACCCTCTCTATATCATGAAGCA
TCGGTTCCCTATAGCGTTCTTCTTGTTTCAGTTGGTCGCATGCTTTTCGT
ACGTGAACTTTGTCTTGCTTCGTGTTCTTGTTTTGGCATCCAAGATGACC
TTTGGTGCTCTTGGGGAAACTTTAGGTGTTGTCGTTGTGGGTCATCACTA
CTACGTCAGGGTATGGCAACCTGCCATTCTTGACAGACCATTCCGGGGTA
CATTCTTTTATTACTTCTGTTACTGTTGGATGTTTGGCGCTTTTGCCTAC
AGCAGAATCCAAGAATTTGCTCCTCTTAAACAACTGAGAGGTCCGAAGCT
ACCACCCCTCATGTGGCTCCGAGTGCTACTCGCCAGATTTACTGCACGTG
GCGTACCAGACGGAGATATTGAGAATGCCCCTTACGAAGATTCAGATGAC
GAAGGTCATGAACGTTAA
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