Ggra2533.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2533.t1
Unique NameGgra2533.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length389
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:601756..602922 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2533Ggra2533Gracilaria gracilis GNS1m malegenetig00000005_pilon 601756..602922 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2533.t1.stop1Ggra2533.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 601756..601758 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2533.t1.CDS1Ggra2533.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 601756..602922 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2533.t1.exon1Ggra2533.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 601756..602922 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2533.t1.start1Ggra2533.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 602920..602922 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2533.t1Ggra2533.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 601756..602922 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2533.t1 ID=Ggra2533.t1|Name=Ggra2533.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=389bp
MLKPFKQRGVLLLTRTNFVILLSLTVSVLTLNITIQSMFRIRRKLIIKER
QARMRRSGLLELPSTAFITMSDPSFQDCMLQLVRSARRIGWKEPMYLLAI
DYHLFEEETHKEIDELGVFVVRTQPIFDSWIDEKIFSQKSYRRLEPKKFR
KMEVFLNPVFRTYERLIYLDADGFLTSLEPMVRVMFPNNVAILMRQNDHS
FNKLSFHRNEFNEEYFDSNQTRLLNIRYPDRAKSGASSYFIVDVNKLPSP
VEIFSRSLEILCTFRSGFRLNDQTLLNLLFYDELAMFPHCSWDEIVVMEE
SRRLLRYCIKNMQLQRWLLGQISFMYRHMAVEEKKECVRKQRKRHTPVDN
ETLADDSMESVGALYFETRAFSSCHDAARAWQERFLTN*
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spliced messenger RNA

>Ggra2533.t1 ID=Ggra2533.t1|Name=Ggra2533.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1167bp|location=Sequence derived from alignment at tig00000005_pilon:601756..602922- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGAAGCCTTTCAAACAAAGGGGTGTTCTGTTACTGACGAGAACCAA
TTTCGTTATTCTACTCTCCTTAACAGTATCAGTTCTCACGCTGAACATTA
CAATCCAAAGTATGTTTCGGATTCGTCGAAAGTTGATAATAAAGGAAAGA
CAGGCACGGATGCGCAGATCAGGTCTACTGGAACTTCCATCAACGGCGTT
TATAACGATGTCAGACCCTTCGTTTCAGGACTGCATGTTACAACTGGTTC
GAAGTGCAAGACGTATTGGATGGAAAGAGCCAATGTACCTGTTGGCCATC
GACTATCACCTGTTTGAGGAGGAAACGCACAAGGAAATCGACGAACTCGG
AGTTTTTGTGGTTAGAACACAGCCCATTTTTGACTCATGGATAGATGAGA
AGATCTTCAGTCAGAAATCCTATCGCCGTCTTGAACCGAAGAAGTTCAGA
AAGATGGAGGTCTTTCTTAATCCCGTGTTTCGAACGTATGAACGCTTGAT
TTATTTAGATGCAGACGGATTCCTGACAAGTTTGGAGCCCATGGTTAGGG
TAATGTTCCCCAACAATGTCGCGATCTTGATGCGACAAAATGACCATTCT
TTCAACAAGCTATCTTTCCATCGAAATGAGTTCAATGAAGAGTACTTTGA
CTCGAACCAAACAAGATTACTGAACATTCGTTACCCGGATCGTGCAAAAT
CGGGGGCTTCGTCTTATTTTATAGTGGATGTGAACAAGCTTCCTTCTCCT
GTTGAGATATTTTCGAGAAGCCTTGAAATCCTCTGCACTTTTCGTTCCGG
ATTTCGCCTCAATGACCAAACACTCCTTAACCTTCTATTTTACGACGAGC
TTGCAATGTTTCCTCATTGTAGTTGGGATGAAATAGTAGTCATGGAGGAA
TCTCGGAGACTACTGCGATATTGTATAAAGAATATGCAGCTTCAAAGGTG
GTTACTTGGCCAAATTTCCTTTATGTACAGGCACATGGCAGTTGAAGAGA
AAAAAGAATGTGTACGGAAACAGAGGAAGAGACATACACCAGTAGACAAC
GAGACGCTTGCTGATGATTCTATGGAGTCAGTCGGGGCATTATACTTTGA
AACGAGAGCGTTCTCGAGCTGTCACGATGCCGCACGTGCTTGGCAGGAAA
GATTCTTAACTAACTGA
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protein sequence of Ggra2533.t1

>Ggra2533.t1 ID=Ggra2533.t1|Name=Ggra2533.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=389bp
MLKPFKQRGVLLLTRTNFVILLSLTVSVLTLNITIQSMFRIRRKLIIKER
QARMRRSGLLELPSTAFITMSDPSFQDCMLQLVRSARRIGWKEPMYLLAI
DYHLFEEETHKEIDELGVFVVRTQPIFDSWIDEKIFSQKSYRRLEPKKFR
KMEVFLNPVFRTYERLIYLDADGFLTSLEPMVRVMFPNNVAILMRQNDHS
FNKLSFHRNEFNEEYFDSNQTRLLNIRYPDRAKSGASSYFIVDVNKLPSP
VEIFSRSLEILCTFRSGFRLNDQTLLNLLFYDELAMFPHCSWDEIVVMEE
SRRLLRYCIKNMQLQRWLLGQISFMYRHMAVEEKKECVRKQRKRHTPVDN
ETLADDSMESVGALYFETRAFSSCHDAARAWQERFLTN*
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mRNA from alignment at tig00000005_pilon:601756..602922-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2533.t1 ID=Ggra2533.t1|Name=Ggra2533.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1167bp|location=Sequence derived from alignment at tig00000005_pilon:601756..602922- (Gracilaria gracilis GNS1m male)
ATGCTGAAGCCTTTCAAACAAAGGGGTGTTCTGTTACTGACGAGAACCAA
TTTCGTTATTCTACTCTCCTTAACAGTATCAGTTCTCACGCTGAACATTA
CAATCCAAAGTATGTTTCGGATTCGTCGAAAGTTGATAATAAAGGAAAGA
CAGGCACGGATGCGCAGATCAGGTCTACTGGAACTTCCATCAACGGCGTT
TATAACGATGTCAGACCCTTCGTTTCAGGACTGCATGTTACAACTGGTTC
GAAGTGCAAGACGTATTGGATGGAAAGAGCCAATGTACCTGTTGGCCATC
GACTATCACCTGTTTGAGGAGGAAACGCACAAGGAAATCGACGAACTCGG
AGTTTTTGTGGTTAGAACACAGCCCATTTTTGACTCATGGATAGATGAGA
AGATCTTCAGTCAGAAATCCTATCGCCGTCTTGAACCGAAGAAGTTCAGA
AAGATGGAGGTCTTTCTTAATCCCGTGTTTCGAACGTATGAACGCTTGAT
TTATTTAGATGCAGACGGATTCCTGACAAGTTTGGAGCCCATGGTTAGGG
TAATGTTCCCCAACAATGTCGCGATCTTGATGCGACAAAATGACCATTCT
TTCAACAAGCTATCTTTCCATCGAAATGAGTTCAATGAAGAGTACTTTGA
CTCGAACCAAACAAGATTACTGAACATTCGTTACCCGGATCGTGCAAAAT
CGGGGGCTTCGTCTTATTTTATAGTGGATGTGAACAAGCTTCCTTCTCCT
GTTGAGATATTTTCGAGAAGCCTTGAAATCCTCTGCACTTTTCGTTCCGG
ATTTCGCCTCAATGACCAAACACTCCTTAACCTTCTATTTTACGACGAGC
TTGCAATGTTTCCTCATTGTAGTTGGGATGAAATAGTAGTCATGGAGGAA
TCTCGGAGACTACTGCGATATTGTATAAAGAATATGCAGCTTCAAAGGTG
GTTACTTGGCCAAATTTCCTTTATGTACAGGCACATGGCAGTTGAAGAGA
AAAAAGAATGTGTACGGAAACAGAGGAAGAGACATACACCAGTAGACAAC
GAGACGCTTGCTGATGATTCTATGGAGTCAGTCGGGGCATTATACTTTGA
AACGAGAGCGTTCTCGAGCTGTCACGATGCCGCACGTGCTTGGCAGGAAA
GATTCTTAACTAACTGA
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Coding sequence (CDS) from alignment at tig00000005_pilon:601756..602922-

>Ggra2533.t1 ID=Ggra2533.t1|Name=Ggra2533.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1167bp|location=Sequence derived from alignment at tig00000005_pilon:601756..602922- (Gracilaria gracilis GNS1m male)
ATGCTGAAGCCTTTCAAACAAAGGGGTGTTCTGTTACTGACGAGAACCAA
TTTCGTTATTCTACTCTCCTTAACAGTATCAGTTCTCACGCTGAACATTA
CAATCCAAAGTATGTTTCGGATTCGTCGAAAGTTGATAATAAAGGAAAGA
CAGGCACGGATGCGCAGATCAGGTCTACTGGAACTTCCATCAACGGCGTT
TATAACGATGTCAGACCCTTCGTTTCAGGACTGCATGTTACAACTGGTTC
GAAGTGCAAGACGTATTGGATGGAAAGAGCCAATGTACCTGTTGGCCATC
GACTATCACCTGTTTGAGGAGGAAACGCACAAGGAAATCGACGAACTCGG
AGTTTTTGTGGTTAGAACACAGCCCATTTTTGACTCATGGATAGATGAGA
AGATCTTCAGTCAGAAATCCTATCGCCGTCTTGAACCGAAGAAGTTCAGA
AAGATGGAGGTCTTTCTTAATCCCGTGTTTCGAACGTATGAACGCTTGAT
TTATTTAGATGCAGACGGATTCCTGACAAGTTTGGAGCCCATGGTTAGGG
TAATGTTCCCCAACAATGTCGCGATCTTGATGCGACAAAATGACCATTCT
TTCAACAAGCTATCTTTCCATCGAAATGAGTTCAATGAAGAGTACTTTGA
CTCGAACCAAACAAGATTACTGAACATTCGTTACCCGGATCGTGCAAAAT
CGGGGGCTTCGTCTTATTTTATAGTGGATGTGAACAAGCTTCCTTCTCCT
GTTGAGATATTTTCGAGAAGCCTTGAAATCCTCTGCACTTTTCGTTCCGG
ATTTCGCCTCAATGACCAAACACTCCTTAACCTTCTATTTTACGACGAGC
TTGCAATGTTTCCTCATTGTAGTTGGGATGAAATAGTAGTCATGGAGGAA
TCTCGGAGACTACTGCGATATTGTATAAAGAATATGCAGCTTCAAAGGTG
GTTACTTGGCCAAATTTCCTTTATGTACAGGCACATGGCAGTTGAAGAGA
AAAAAGAATGTGTACGGAAACAGAGGAAGAGACATACACCAGTAGACAAC
GAGACGCTTGCTGATGATTCTATGGAGTCAGTCGGGGCATTATACTTTGA
AACGAGAGCGTTCTCGAGCTGTCACGATGCCGCACGTGCTTGGCAGGAAA
GATTCTTAACTAACTGA
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