Ggra7905.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7905.t1
Unique NameGgra7905.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length456
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000073_piloncontigtig00000073_pilon:404960..406327 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005709110.1
Preferred nameDCAF13
PFAMsSof1,WD40
Max annot lvl2759|Eukaryota
KEGG koko:K11806
GOsGO:0000151,GO:0000462,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0006139,GO:0006364,GO:0006396,GO:0006464,GO:0006725,GO:0006807,GO:0008134,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0015630,GO:0016070,GO:0016072,GO:0019538,GO:0022613,GO:0030054,GO:0030331,GO:0030490,GO:0030515,GO:0030684,GO:0030686,GO:0031461,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0035257,GO:0035258,GO:0036211,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043687,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0051427,GO:0070013,GO:0071704,GO:0071840,GO:0080008,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1902494,GO:1990234,GO:1990904
Evalue6.52e-85
EggNOG OGsKOG0268@1|root,KOG0268@2759|Eukaryota
Descriptionmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
COG categoryS
BRITEko00000,ko03009,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7905Ggra7905Gracilaria gracilis GNS1m malegenetig00000073_pilon 404960..406327 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7905.t1.stop1Ggra7905.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000073_pilon 404960..404962 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7905.t1.CDS1Ggra7905.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000073_pilon 404960..406327 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7905.t1.exon1Ggra7905.t1.exon1Gracilaria gracilis GNS1m maleexontig00000073_pilon 404960..406327 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7905.t1.start1Ggra7905.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000073_pilon 406325..406327 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7905.t1Ggra7905.t1Gracilaria gracilis GNS1m malepolypeptidetig00000073_pilon 404960..406327 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7905.t1 ID=Ggra7905.t1|Name=Ggra7905.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=456bp
MRLRVLSRSDAEWSGRNDGTTNRARFSSNPKPQLHAPQHPLDVQRSITAA
KLNRILARPFLFACSPSHQDGVYCLARSRRNVALLASAAADGEMRLWHLP
SHRARFALAPTPRAFVRAISFSHDSQRILFCTDAKLVHCAQVSAEYAANP
DLVHSLHQYRSNAGPLASIHANYNQPWFATASSVVQLWDESRSNPIQSLS
SSVDSLHCVRWNPVETSILASAGSDRSITLYDVRAKTPVRRLVLKMRTND
ISWNPIEAMNFVTANDDHNCYAYDLRKLSDRGALSVHKDHAAAVMSVDFS
PTGQEFVTGSYDKTIRIFPYTTGRSREVYHTKRMQRVFAVSFSLDGSYVI
SGSDDADVRVWKSERSRPLKPLFAAEREKVDAADKLIRRYQSLSEVRKIA
KKRHVPAHVRSMQITKAIMKKSAERKEKNVRRNTRPEKRPKKVQERKKNI
VRELE*
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spliced messenger RNA

>Ggra7905.t1 ID=Ggra7905.t1|Name=Ggra7905.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1368bp|location=Sequence derived from alignment at tig00000073_pilon:404960..406327- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGCTCCGCGTGCTGTCGCGCTCCGACGCGGAGTGGTCCGGGCGCAA
CGACGGCACCACCAACCGCGCGCGCTTTTCGTCCAACCCCAAGCCGCAGC
TGCACGCGCCGCAGCACCCGCTCGACGTGCAGCGTTCCATCACCGCCGCC
AAGCTCAACCGCATCCTGGCGCGCCCGTTCCTGTTCGCCTGCTCGCCCTC
CCATCAGGACGGCGTGTACTGTCTGGCGCGCTCGCGTCGCAATGTCGCGC
TGCTGGCGTCCGCCGCCGCCGACGGCGAGATGCGCCTGTGGCATTTGCCC
TCCCATCGCGCCCGCTTTGCGCTTGCGCCTACGCCGCGCGCTTTCGTTAG
GGCTATCTCCTTCTCTCATGATTCTCAACGCATCTTGTTTTGTACCGATG
CCAAACTGGTTCACTGTGCGCAGGTGAGTGCTGAATACGCTGCAAACCCC
GACTTGGTCCACTCTTTGCATCAGTATCGTTCCAATGCGGGCCCGCTGGC
GTCCATTCACGCCAATTATAACCAGCCTTGGTTCGCCACTGCGTCGAGCG
TCGTGCAGCTTTGGGATGAGAGTCGCTCCAACCCCATTCAATCTCTGTCG
TCCTCCGTCGATTCGTTGCACTGCGTCAGGTGGAATCCAGTGGAGACCTC
TATCCTGGCGTCTGCAGGCTCGGATCGCTCCATCACCTTGTACGACGTGC
GAGCCAAAACGCCCGTTCGAAGGTTGGTGCTCAAGATGCGCACCAACGAC
ATCTCGTGGAATCCTATCGAAGCTATGAACTTTGTCACGGCCAACGACGA
CCACAACTGCTATGCATACGACTTGAGAAAACTGTCCGATAGGGGAGCGT
TGTCTGTTCACAAGGACCATGCTGCAGCCGTTATGTCGGTCGACTTCAGC
CCGACGGGGCAAGAATTCGTCACCGGCAGTTATGACAAGACCATTCGAAT
CTTCCCGTACACCACCGGTAGAAGTCGCGAAGTTTACCACACCAAGCGAA
TGCAACGCGTGTTTGCCGTGTCGTTTTCGTTGGATGGATCGTACGTCATT
TCCGGCAGTGATGACGCTGATGTGCGCGTGTGGAAGAGTGAACGAAGTCG
TCCCCTCAAGCCTCTCTTTGCTGCTGAGCGAGAAAAGGTCGATGCCGCCG
ACAAGTTGATCCGCCGATATCAATCGCTTTCTGAGGTCAGGAAGATTGCA
AAGAAACGCCATGTACCGGCTCATGTACGCTCTATGCAAATTACCAAGGC
GATCATGAAGAAGAGCGCTGAACGAAAGGAGAAGAATGTGCGAAGAAATA
CTAGACCGGAGAAACGACCCAAAAAGGTTCAAGAACGAAAGAAGAACATT
GTTCGCGAATTGGAATAG
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protein sequence of Ggra7905.t1

>Ggra7905.t1 ID=Ggra7905.t1|Name=Ggra7905.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=456bp
MRLRVLSRSDAEWSGRNDGTTNRARFSSNPKPQLHAPQHPLDVQRSITAA
KLNRILARPFLFACSPSHQDGVYCLARSRRNVALLASAAADGEMRLWHLP
SHRARFALAPTPRAFVRAISFSHDSQRILFCTDAKLVHCAQVSAEYAANP
DLVHSLHQYRSNAGPLASIHANYNQPWFATASSVVQLWDESRSNPIQSLS
SSVDSLHCVRWNPVETSILASAGSDRSITLYDVRAKTPVRRLVLKMRTND
ISWNPIEAMNFVTANDDHNCYAYDLRKLSDRGALSVHKDHAAAVMSVDFS
PTGQEFVTGSYDKTIRIFPYTTGRSREVYHTKRMQRVFAVSFSLDGSYVI
SGSDDADVRVWKSERSRPLKPLFAAEREKVDAADKLIRRYQSLSEVRKIA
KKRHVPAHVRSMQITKAIMKKSAERKEKNVRRNTRPEKRPKKVQERKKNI
VRELE*
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mRNA from alignment at tig00000073_pilon:404960..406327-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7905.t1 ID=Ggra7905.t1|Name=Ggra7905.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1368bp|location=Sequence derived from alignment at tig00000073_pilon:404960..406327- (Gracilaria gracilis GNS1m male)
ATGAGGCTCCGCGTGCTGTCGCGCTCCGACGCGGAGTGGTCCGGGCGCAA
CGACGGCACCACCAACCGCGCGCGCTTTTCGTCCAACCCCAAGCCGCAGC
TGCACGCGCCGCAGCACCCGCTCGACGTGCAGCGTTCCATCACCGCCGCC
AAGCTCAACCGCATCCTGGCGCGCCCGTTCCTGTTCGCCTGCTCGCCCTC
CCATCAGGACGGCGTGTACTGTCTGGCGCGCTCGCGTCGCAATGTCGCGC
TGCTGGCGTCCGCCGCCGCCGACGGCGAGATGCGCCTGTGGCATTTGCCC
TCCCATCGCGCCCGCTTTGCGCTTGCGCCTACGCCGCGCGCTTTCGTTAG
GGCTATCTCCTTCTCTCATGATTCTCAACGCATCTTGTTTTGTACCGATG
CCAAACTGGTTCACTGTGCGCAGGTGAGTGCTGAATACGCTGCAAACCCC
GACTTGGTCCACTCTTTGCATCAGTATCGTTCCAATGCGGGCCCGCTGGC
GTCCATTCACGCCAATTATAACCAGCCTTGGTTCGCCACTGCGTCGAGCG
TCGTGCAGCTTTGGGATGAGAGTCGCTCCAACCCCATTCAATCTCTGTCG
TCCTCCGTCGATTCGTTGCACTGCGTCAGGTGGAATCCAGTGGAGACCTC
TATCCTGGCGTCTGCAGGCTCGGATCGCTCCATCACCTTGTACGACGTGC
GAGCCAAAACGCCCGTTCGAAGGTTGGTGCTCAAGATGCGCACCAACGAC
ATCTCGTGGAATCCTATCGAAGCTATGAACTTTGTCACGGCCAACGACGA
CCACAACTGCTATGCATACGACTTGAGAAAACTGTCCGATAGGGGAGCGT
TGTCTGTTCACAAGGACCATGCTGCAGCCGTTATGTCGGTCGACTTCAGC
CCGACGGGGCAAGAATTCGTCACCGGCAGTTATGACAAGACCATTCGAAT
CTTCCCGTACACCACCGGTAGAAGTCGCGAAGTTTACCACACCAAGCGAA
TGCAACGCGTGTTTGCCGTGTCGTTTTCGTTGGATGGATCGTACGTCATT
TCCGGCAGTGATGACGCTGATGTGCGCGTGTGGAAGAGTGAACGAAGTCG
TCCCCTCAAGCCTCTCTTTGCTGCTGAGCGAGAAAAGGTCGATGCCGCCG
ACAAGTTGATCCGCCGATATCAATCGCTTTCTGAGGTCAGGAAGATTGCA
AAGAAACGCCATGTACCGGCTCATGTACGCTCTATGCAAATTACCAAGGC
GATCATGAAGAAGAGCGCTGAACGAAAGGAGAAGAATGTGCGAAGAAATA
CTAGACCGGAGAAACGACCCAAAAAGGTTCAAGAACGAAAGAAGAACATT
GTTCGCGAATTGGAATAG
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Coding sequence (CDS) from alignment at tig00000073_pilon:404960..406327-

>Ggra7905.t1 ID=Ggra7905.t1|Name=Ggra7905.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1368bp|location=Sequence derived from alignment at tig00000073_pilon:404960..406327- (Gracilaria gracilis GNS1m male)
ATGAGGCTCCGCGTGCTGTCGCGCTCCGACGCGGAGTGGTCCGGGCGCAA
CGACGGCACCACCAACCGCGCGCGCTTTTCGTCCAACCCCAAGCCGCAGC
TGCACGCGCCGCAGCACCCGCTCGACGTGCAGCGTTCCATCACCGCCGCC
AAGCTCAACCGCATCCTGGCGCGCCCGTTCCTGTTCGCCTGCTCGCCCTC
CCATCAGGACGGCGTGTACTGTCTGGCGCGCTCGCGTCGCAATGTCGCGC
TGCTGGCGTCCGCCGCCGCCGACGGCGAGATGCGCCTGTGGCATTTGCCC
TCCCATCGCGCCCGCTTTGCGCTTGCGCCTACGCCGCGCGCTTTCGTTAG
GGCTATCTCCTTCTCTCATGATTCTCAACGCATCTTGTTTTGTACCGATG
CCAAACTGGTTCACTGTGCGCAGGTGAGTGCTGAATACGCTGCAAACCCC
GACTTGGTCCACTCTTTGCATCAGTATCGTTCCAATGCGGGCCCGCTGGC
GTCCATTCACGCCAATTATAACCAGCCTTGGTTCGCCACTGCGTCGAGCG
TCGTGCAGCTTTGGGATGAGAGTCGCTCCAACCCCATTCAATCTCTGTCG
TCCTCCGTCGATTCGTTGCACTGCGTCAGGTGGAATCCAGTGGAGACCTC
TATCCTGGCGTCTGCAGGCTCGGATCGCTCCATCACCTTGTACGACGTGC
GAGCCAAAACGCCCGTTCGAAGGTTGGTGCTCAAGATGCGCACCAACGAC
ATCTCGTGGAATCCTATCGAAGCTATGAACTTTGTCACGGCCAACGACGA
CCACAACTGCTATGCATACGACTTGAGAAAACTGTCCGATAGGGGAGCGT
TGTCTGTTCACAAGGACCATGCTGCAGCCGTTATGTCGGTCGACTTCAGC
CCGACGGGGCAAGAATTCGTCACCGGCAGTTATGACAAGACCATTCGAAT
CTTCCCGTACACCACCGGTAGAAGTCGCGAAGTTTACCACACCAAGCGAA
TGCAACGCGTGTTTGCCGTGTCGTTTTCGTTGGATGGATCGTACGTCATT
TCCGGCAGTGATGACGCTGATGTGCGCGTGTGGAAGAGTGAACGAAGTCG
TCCCCTCAAGCCTCTCTTTGCTGCTGAGCGAGAAAAGGTCGATGCCGCCG
ACAAGTTGATCCGCCGATATCAATCGCTTTCTGAGGTCAGGAAGATTGCA
AAGAAACGCCATGTACCGGCTCATGTACGCTCTATGCAAATTACCAAGGC
GATCATGAAGAAGAGCGCTGAACGAAAGGAGAAGAATGTGCGAAGAAATA
CTAGACCGGAGAAACGACCCAAAAAGGTTCAAGAACGAAAGAAGAACATT
GTTCGCGAATTGGAATAG
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