Ggra7886.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra7886.t1
Unique NameGgra7886.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length244
Homology
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BLAST of Ggra7886.t1 vs. uniprot
Match: A0A2V3J601 (C2H2-type domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J601_9FLOR)

HSP 1 Score: 246 bits (627), Expect = 2.430e-78
Identity = 121/243 (49.79%), Postives = 159/243 (65.43%), Query Frame = 0 
Query:    1 MKPSETVFHFHIASSCNESREPSKVRAGWVAILRTKTCAIEFHRPLCLQCDNGRQTSLRALLRCLSFAATTSHELAKVGGRESENYALCDARPIGAEKFIVKVFTPEKSGTLSRLDRGGMFKAHRDIHQSIKNVSKCLKQVGVSLRLFWESEEEEVMKYAIDLADYAHEEAAAAYCITCDFKCDGDFSNMIEHLKTVHLNRDQDEEACRAIDFASTNAWSICGLCATAFLDREELMQHQKQCH 243
            M    T   F+IA +C +S    + RA W  IL        FHRPLC QCD GRQTSLRALLR L F A T+HEL KVGGRE +++ALCDARP+  ++F V+V TPE++G L+       ++AH D+H SI+ V +CL+Q GV  R+F ESEEE +M   + LA+ A  EAA+A C TC F+C G+F++MIEH+K VHL  D+ EE  R ++FA  N W ICG C  AFLD  + ++HQ + H
Sbjct:    1 MTSKRTTLRFNIAGACVKSEAKQEDRAAWFVILTIGDNIFAFHRPLCGQCDYGRQTSLRALLRSLMFVANTAHELTKVGGREPDDHALCDARPMAKDRFAVEVLTPEQNGCLANFGNF-QYRAHLDLHHSIRQVIECLRQAGVHFRIFKESEEERIMDCTLTLAELACGEAASASCRTCRFQCGGNFTSMIEHIKRVHLKLDEVEEDSRVVEFAGRNPWWICGKCRMAFLDHNDFVRHQDETH 242
The following BLAST results are available for this feature:
BLAST of Ggra7886.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3J6012.430e-7849.79C2H2-type domain-containing protein n=1 Tax=Gracil... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 222..243
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 220..243
score: 9.327772
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..16
score: 5.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000073_piloncontigtig00000073_pilon:242170..242901 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7886.t1Ggra7886.t1Gracilaria gracilis GNS1m malemRNAtig00000073_pilon 242170..242901 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra7886.t1 ID=Ggra7886.t1|Name=Ggra7886.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=244bp
MKPSETVFHFHIASSCNESREPSKVRAGWVAILRTKTCAIEFHRPLCLQC
DNGRQTSLRALLRCLSFAATTSHELAKVGGRESENYALCDARPIGAEKFI
VKVFTPEKSGTLSRLDRGGMFKAHRDIHQSIKNVSKCLKQVGVSLRLFWE
SEEEEVMKYAIDLADYAHEEAAAAYCITCDFKCDGDFSNMIEHLKTVHLN
RDQDEEACRAIDFASTNAWSICGLCATAFLDREELMQHQKQCH*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type