Ggra7922.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7922.t1
Unique NameGgra7922.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length497
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000073_piloncontigtig00000073_pilon:437614..439104 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog44689.DDB0220702
PFAMsPkinase
Max annot lvl554915|Amoebozoa
KEGG koko:K04688
KEGG Pathwayko01521,ko01522,ko04012,ko04066,ko04140,ko04150,ko04151,ko04152,ko04211,ko04212,ko04213,ko04350,ko04371,ko04666,ko04714,ko04910,ko04931,ko05165,ko05200,ko05205,ko05210,ko05212,ko05221,ko05224,ko05225,ko05226,ko05231,map01521,map01522,map04012,map04066,map04140,map04150,map04151,map04152,map04211,map04212,map04213,map04350,map04371,map04666,map04714,map04910,map04931,map05165,map05200,map05205,map05210,map05212,map05221,map05224,map05225,map05226,map05231
GOsGO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0023052,GO:0035556,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0071704,GO:0140096,GO:1901564
Evalue8.03e-83
EggNOG OGsKOG0598@1|root,KOG0598@2759|Eukaryota,3XGE5@554915|Amoebozoa
EC2.7.11.1
DescriptionHaspin like kinase domain
COG categoryT
BRITEko00000,ko00001,ko01000,ko01001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7922Ggra7922Gracilaria gracilis GNS1m malegenetig00000073_pilon 437614..439104 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7922.t1.stop1Ggra7922.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000073_pilon 437614..437616 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7922.t1.CDS1Ggra7922.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000073_pilon 437614..439104 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7922.t1.exon1Ggra7922.t1.exon1Gracilaria gracilis GNS1m maleexontig00000073_pilon 437614..439104 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7922.t1.start1Ggra7922.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000073_pilon 439102..439104 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7922.t1Ggra7922.t1Gracilaria gracilis GNS1m malepolypeptidetig00000073_pilon 437614..439104 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7922.t1 ID=Ggra7922.t1|Name=Ggra7922.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=497bp
MHLELVPPLSSDFTSNDFTNDFLTPASSPPPSTPPLLHMQPLGSPPSLGR
RRLDAFHIMCLIGKGGFGKVFMVRHKATAAVYAMKVMEKEALINRKAVRD
AHTERNILALVGQYDAPFIIRLHVAFQTSKRVYLVMDFASGGELMFHLRR
EAMLSESQAKFYAAELLIALETLHNMDIVHRDIKPENVLLDSEGHLILTD
FGLAKELSDDGEQTHSWCGSEDYMAPEIITRDAYCGKAADYWAYGIFIYD
CICGQPPFSPLHEKGKLSRKRLHERIVRCKYKLPKYLTSECQSLIRRLLT
KDVTKRLTDPEAIRKHAWFREIDWEAIRSRSAVPPIIPSLSSPTACFSPS
LTKTNCSAPQSPLNVSPLNVSLEARSSPMAIAASNSQAQAQAKAQGQAQG
QAQGQAQPSTAGDNMWQGFSFVAPGMEVHFELAPAMVVDRSFGVTRDVGG
AFGATVVEGETDRTVSEDVEESLVAELAEFSMEAARAVEIVDGDTV*
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spliced messenger RNA

>Ggra7922.t1 ID=Ggra7922.t1|Name=Ggra7922.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1491bp|location=Sequence derived from alignment at tig00000073_pilon:437614..439104- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATTTGGAGCTTGTTCCCCCGCTAAGCTCCGACTTCACTTCTAACGA
TTTCACCAATGACTTTTTAACTCCGGCGTCTTCTCCCCCGCCGTCCACCC
CGCCCTTGCTCCACATGCAGCCTCTGGGCAGTCCTCCGTCTCTCGGCCGC
CGTCGTCTCGATGCCTTCCACATCATGTGCCTCATTGGCAAGGGTGGGTT
CGGCAAGGTGTTCATGGTACGCCACAAGGCCACCGCCGCCGTGTACGCCA
TGAAAGTGATGGAGAAAGAGGCTCTCATCAATCGAAAGGCCGTGCGAGAC
GCCCATACCGAACGTAACATCTTGGCACTTGTCGGTCAATATGACGCCCC
ATTCATCATCCGTCTGCACGTCGCGTTCCAGACTTCCAAACGAGTATACC
TCGTCATGGACTTTGCGTCAGGAGGTGAGCTCATGTTTCATCTGCGTCGT
GAGGCAATGCTCAGCGAGTCACAGGCCAAGTTTTATGCGGCCGAATTGTT
GATTGCACTTGAGACGTTGCACAACATGGATATTGTTCACAGAGATATCA
AACCGGAAAACGTGCTGTTGGACAGTGAGGGCCATCTCATTCTCACTGAC
TTTGGACTCGCCAAAGAGCTCTCCGACGACGGCGAACAAACTCACTCTTG
GTGCGGGTCGGAAGACTACATGGCGCCAGAAATCATCACTCGCGACGCAT
ATTGCGGAAAGGCGGCCGATTACTGGGCGTACGGCATCTTCATTTATGAT
TGTATCTGCGGTCAACCACCCTTCTCTCCGCTTCACGAAAAGGGAAAGCT
CAGTCGCAAGCGTCTGCACGAGCGCATCGTGCGGTGCAAGTACAAGCTGC
CAAAGTACCTGACTTCGGAGTGCCAGTCTCTGATTCGCAGACTTCTTACC
AAAGACGTGACGAAGCGATTGACGGATCCCGAGGCAATTCGTAAGCACGC
ATGGTTCCGTGAGATCGATTGGGAGGCCATTCGTAGCCGAAGCGCCGTAC
CGCCAATCATCCCGTCGCTGTCATCGCCCACAGCATGCTTCTCACCGTCA
TTGACCAAGACGAATTGCTCGGCGCCTCAGTCGCCGCTCAACGTGTCGCC
GCTTAACGTGTCGTTGGAAGCCAGGAGCTCACCGATGGCCATCGCGGCCA
GCAACTCGCAGGCGCAGGCGCAGGCAAAGGCACAGGGACAGGCACAGGGA
CAGGCACAGGGACAGGCACAGCCTTCGACGGCGGGCGATAACATGTGGCA
AGGCTTCTCGTTCGTGGCTCCTGGCATGGAGGTGCACTTCGAACTGGCGC
CCGCCATGGTGGTGGATCGCAGCTTCGGTGTGACTCGGGACGTGGGTGGG
GCATTCGGGGCGACGGTTGTGGAGGGCGAGACGGACAGGACGGTTTCGGA
GGATGTGGAGGAGTCGTTGGTTGCCGAGTTGGCGGAGTTTTCGATGGAGG
CGGCTAGGGCGGTGGAGATTGTAGACGGAGATACTGTGTGA
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protein sequence of Ggra7922.t1

>Ggra7922.t1 ID=Ggra7922.t1|Name=Ggra7922.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=497bp
MHLELVPPLSSDFTSNDFTNDFLTPASSPPPSTPPLLHMQPLGSPPSLGR
RRLDAFHIMCLIGKGGFGKVFMVRHKATAAVYAMKVMEKEALINRKAVRD
AHTERNILALVGQYDAPFIIRLHVAFQTSKRVYLVMDFASGGELMFHLRR
EAMLSESQAKFYAAELLIALETLHNMDIVHRDIKPENVLLDSEGHLILTD
FGLAKELSDDGEQTHSWCGSEDYMAPEIITRDAYCGKAADYWAYGIFIYD
CICGQPPFSPLHEKGKLSRKRLHERIVRCKYKLPKYLTSECQSLIRRLLT
KDVTKRLTDPEAIRKHAWFREIDWEAIRSRSAVPPIIPSLSSPTACFSPS
LTKTNCSAPQSPLNVSPLNVSLEARSSPMAIAASNSQAQAQAKAQGQAQG
QAQGQAQPSTAGDNMWQGFSFVAPGMEVHFELAPAMVVDRSFGVTRDVGG
AFGATVVEGETDRTVSEDVEESLVAELAEFSMEAARAVEIVDGDTV*
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mRNA from alignment at tig00000073_pilon:437614..439104-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7922.t1 ID=Ggra7922.t1|Name=Ggra7922.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1491bp|location=Sequence derived from alignment at tig00000073_pilon:437614..439104- (Gracilaria gracilis GNS1m male)
ATGCATTTGGAGCTTGTTCCCCCGCTAAGCTCCGACTTCACTTCTAACGA
TTTCACCAATGACTTTTTAACTCCGGCGTCTTCTCCCCCGCCGTCCACCC
CGCCCTTGCTCCACATGCAGCCTCTGGGCAGTCCTCCGTCTCTCGGCCGC
CGTCGTCTCGATGCCTTCCACATCATGTGCCTCATTGGCAAGGGTGGGTT
CGGCAAGGTGTTCATGGTACGCCACAAGGCCACCGCCGCCGTGTACGCCA
TGAAAGTGATGGAGAAAGAGGCTCTCATCAATCGAAAGGCCGTGCGAGAC
GCCCATACCGAACGTAACATCTTGGCACTTGTCGGTCAATATGACGCCCC
ATTCATCATCCGTCTGCACGTCGCGTTCCAGACTTCCAAACGAGTATACC
TCGTCATGGACTTTGCGTCAGGAGGTGAGCTCATGTTTCATCTGCGTCGT
GAGGCAATGCTCAGCGAGTCACAGGCCAAGTTTTATGCGGCCGAATTGTT
GATTGCACTTGAGACGTTGCACAACATGGATATTGTTCACAGAGATATCA
AACCGGAAAACGTGCTGTTGGACAGTGAGGGCCATCTCATTCTCACTGAC
TTTGGACTCGCCAAAGAGCTCTCCGACGACGGCGAACAAACTCACTCTTG
GTGCGGGTCGGAAGACTACATGGCGCCAGAAATCATCACTCGCGACGCAT
ATTGCGGAAAGGCGGCCGATTACTGGGCGTACGGCATCTTCATTTATGAT
TGTATCTGCGGTCAACCACCCTTCTCTCCGCTTCACGAAAAGGGAAAGCT
CAGTCGCAAGCGTCTGCACGAGCGCATCGTGCGGTGCAAGTACAAGCTGC
CAAAGTACCTGACTTCGGAGTGCCAGTCTCTGATTCGCAGACTTCTTACC
AAAGACGTGACGAAGCGATTGACGGATCCCGAGGCAATTCGTAAGCACGC
ATGGTTCCGTGAGATCGATTGGGAGGCCATTCGTAGCCGAAGCGCCGTAC
CGCCAATCATCCCGTCGCTGTCATCGCCCACAGCATGCTTCTCACCGTCA
TTGACCAAGACGAATTGCTCGGCGCCTCAGTCGCCGCTCAACGTGTCGCC
GCTTAACGTGTCGTTGGAAGCCAGGAGCTCACCGATGGCCATCGCGGCCA
GCAACTCGCAGGCGCAGGCGCAGGCAAAGGCACAGGGACAGGCACAGGGA
CAGGCACAGGGACAGGCACAGCCTTCGACGGCGGGCGATAACATGTGGCA
AGGCTTCTCGTTCGTGGCTCCTGGCATGGAGGTGCACTTCGAACTGGCGC
CCGCCATGGTGGTGGATCGCAGCTTCGGTGTGACTCGGGACGTGGGTGGG
GCATTCGGGGCGACGGTTGTGGAGGGCGAGACGGACAGGACGGTTTCGGA
GGATGTGGAGGAGTCGTTGGTTGCCGAGTTGGCGGAGTTTTCGATGGAGG
CGGCTAGGGCGGTGGAGATTGTAGACGGAGATACTGTGTGA
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Coding sequence (CDS) from alignment at tig00000073_pilon:437614..439104-

>Ggra7922.t1 ID=Ggra7922.t1|Name=Ggra7922.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1491bp|location=Sequence derived from alignment at tig00000073_pilon:437614..439104- (Gracilaria gracilis GNS1m male)
ATGCATTTGGAGCTTGTTCCCCCGCTAAGCTCCGACTTCACTTCTAACGA
TTTCACCAATGACTTTTTAACTCCGGCGTCTTCTCCCCCGCCGTCCACCC
CGCCCTTGCTCCACATGCAGCCTCTGGGCAGTCCTCCGTCTCTCGGCCGC
CGTCGTCTCGATGCCTTCCACATCATGTGCCTCATTGGCAAGGGTGGGTT
CGGCAAGGTGTTCATGGTACGCCACAAGGCCACCGCCGCCGTGTACGCCA
TGAAAGTGATGGAGAAAGAGGCTCTCATCAATCGAAAGGCCGTGCGAGAC
GCCCATACCGAACGTAACATCTTGGCACTTGTCGGTCAATATGACGCCCC
ATTCATCATCCGTCTGCACGTCGCGTTCCAGACTTCCAAACGAGTATACC
TCGTCATGGACTTTGCGTCAGGAGGTGAGCTCATGTTTCATCTGCGTCGT
GAGGCAATGCTCAGCGAGTCACAGGCCAAGTTTTATGCGGCCGAATTGTT
GATTGCACTTGAGACGTTGCACAACATGGATATTGTTCACAGAGATATCA
AACCGGAAAACGTGCTGTTGGACAGTGAGGGCCATCTCATTCTCACTGAC
TTTGGACTCGCCAAAGAGCTCTCCGACGACGGCGAACAAACTCACTCTTG
GTGCGGGTCGGAAGACTACATGGCGCCAGAAATCATCACTCGCGACGCAT
ATTGCGGAAAGGCGGCCGATTACTGGGCGTACGGCATCTTCATTTATGAT
TGTATCTGCGGTCAACCACCCTTCTCTCCGCTTCACGAAAAGGGAAAGCT
CAGTCGCAAGCGTCTGCACGAGCGCATCGTGCGGTGCAAGTACAAGCTGC
CAAAGTACCTGACTTCGGAGTGCCAGTCTCTGATTCGCAGACTTCTTACC
AAAGACGTGACGAAGCGATTGACGGATCCCGAGGCAATTCGTAAGCACGC
ATGGTTCCGTGAGATCGATTGGGAGGCCATTCGTAGCCGAAGCGCCGTAC
CGCCAATCATCCCGTCGCTGTCATCGCCCACAGCATGCTTCTCACCGTCA
TTGACCAAGACGAATTGCTCGGCGCCTCAGTCGCCGCTCAACGTGTCGCC
GCTTAACGTGTCGTTGGAAGCCAGGAGCTCACCGATGGCCATCGCGGCCA
GCAACTCGCAGGCGCAGGCGCAGGCAAAGGCACAGGGACAGGCACAGGGA
CAGGCACAGGGACAGGCACAGCCTTCGACGGCGGGCGATAACATGTGGCA
AGGCTTCTCGTTCGTGGCTCCTGGCATGGAGGTGCACTTCGAACTGGCGC
CCGCCATGGTGGTGGATCGCAGCTTCGGTGTGACTCGGGACGTGGGTGGG
GCATTCGGGGCGACGGTTGTGGAGGGCGAGACGGACAGGACGGTTTCGGA
GGATGTGGAGGAGTCGTTGGTTGCCGAGTTGGCGGAGTTTTCGATGGAGG
CGGCTAGGGCGGTGGAGATTGTAGACGGAGATACTGTGTGA
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