Ggra5203.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5203.t1
Unique NameGgra5203.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length184
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:747909..748460 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704534.1
Preferred nameIMP3
PFAMsRibosomal_S4,S4
Max annot lvl2759|Eukaryota
KEGG koko:K14560
KEGG Pathwayko03008,map03008
GOsGO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005732,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030515,GO:0030532,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034457,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0120114,GO:1901360,GO:1901363,GO:1990904
Evalue1.39e-80
EggNOG OGsCOG0522@1|root,KOG4655@2759|Eukaryota
DescriptionsnoRNA binding
COG categoryJ
BRITEko00000,ko00001,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5203Ggra5203Gracilaria gracilis GNS1m malegenetig00000069_pilon 747909..748460 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5203.t1.stop1Ggra5203.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000069_pilon 747909..747911 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5203.t1.CDS1Ggra5203.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000069_pilon 747909..748460 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5203.t1.exon1Ggra5203.t1.exon1Gracilaria gracilis GNS1m maleexontig00000069_pilon 747909..748460 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5203.t1.start1Ggra5203.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000069_pilon 748458..748460 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5203.t1Ggra5203.t1Gracilaria gracilis GNS1m malepolypeptidetig00000069_pilon 747909..748460 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5203.t1 ID=Ggra5203.t1|Name=Ggra5203.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=184bp
MRKLKYHEYKLLRKADFLKWKRESNLREVKVARRYHLSNPNEYHQYSKII
GDIKHLCSKIQELEPDDPTRIQRTEDLLTKLYDMGIISIKSGLGECSKVT
VSAICRRRLPVVMKRLKFAENHTEAITLIEQGHIRVGPTPVKDPAMLVTR
NMEDFITWVDTSKIKRKVSQFNDNLDDYDLLNA*
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spliced messenger RNA

>Ggra5203.t1 ID=Ggra5203.t1|Name=Ggra5203.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=552bp|location=Sequence derived from alignment at tig00000069_pilon:747909..748460- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGAAATTAAAGTATCACGAATATAAACTGCTACGAAAAGCAGACTT
CTTGAAGTGGAAGCGAGAGAGTAACCTGCGAGAAGTCAAGGTTGCCCGAC
GCTATCATCTTTCCAATCCAAATGAATACCATCAGTATTCAAAAATAATC
GGGGATATCAAACATCTTTGTTCTAAAATTCAGGAACTCGAGCCAGATGA
CCCGACTCGGATCCAGCGCACGGAAGATCTCTTAACGAAGTTATATGACA
TGGGCATCATTTCCATTAAGTCTGGCTTGGGGGAATGTTCTAAGGTGACC
GTTAGTGCAATCTGTCGAAGAAGGTTGCCAGTGGTGATGAAGAGACTGAA
GTTCGCGGAGAATCACACCGAGGCGATAACTCTGATTGAACAAGGACATA
TTCGAGTTGGGCCTACTCCAGTGAAGGATCCTGCTATGCTAGTGACTAGA
AACATGGAAGACTTCATTACGTGGGTAGATACAAGTAAGATCAAACGCAA
AGTGTCTCAGTTTAATGACAATCTGGATGACTATGATCTTCTGAACGCAT
AG
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protein sequence of Ggra5203.t1

>Ggra5203.t1 ID=Ggra5203.t1|Name=Ggra5203.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=184bp
MRKLKYHEYKLLRKADFLKWKRESNLREVKVARRYHLSNPNEYHQYSKII
GDIKHLCSKIQELEPDDPTRIQRTEDLLTKLYDMGIISIKSGLGECSKVT
VSAICRRRLPVVMKRLKFAENHTEAITLIEQGHIRVGPTPVKDPAMLVTR
NMEDFITWVDTSKIKRKVSQFNDNLDDYDLLNA*
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mRNA from alignment at tig00000069_pilon:747909..748460-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5203.t1 ID=Ggra5203.t1|Name=Ggra5203.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=552bp|location=Sequence derived from alignment at tig00000069_pilon:747909..748460- (Gracilaria gracilis GNS1m male)
ATGAGGAAATTAAAGTATCACGAATATAAACTGCTACGAAAAGCAGACTT
CTTGAAGTGGAAGCGAGAGAGTAACCTGCGAGAAGTCAAGGTTGCCCGAC
GCTATCATCTTTCCAATCCAAATGAATACCATCAGTATTCAAAAATAATC
GGGGATATCAAACATCTTTGTTCTAAAATTCAGGAACTCGAGCCAGATGA
CCCGACTCGGATCCAGCGCACGGAAGATCTCTTAACGAAGTTATATGACA
TGGGCATCATTTCCATTAAGTCTGGCTTGGGGGAATGTTCTAAGGTGACC
GTTAGTGCAATCTGTCGAAGAAGGTTGCCAGTGGTGATGAAGAGACTGAA
GTTCGCGGAGAATCACACCGAGGCGATAACTCTGATTGAACAAGGACATA
TTCGAGTTGGGCCTACTCCAGTGAAGGATCCTGCTATGCTAGTGACTAGA
AACATGGAAGACTTCATTACGTGGGTAGATACAAGTAAGATCAAACGCAA
AGTGTCTCAGTTTAATGACAATCTGGATGACTATGATCTTCTGAACGCAT
AG
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Coding sequence (CDS) from alignment at tig00000069_pilon:747909..748460-

>Ggra5203.t1 ID=Ggra5203.t1|Name=Ggra5203.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=552bp|location=Sequence derived from alignment at tig00000069_pilon:747909..748460- (Gracilaria gracilis GNS1m male)
ATGAGGAAATTAAAGTATCACGAATATAAACTGCTACGAAAAGCAGACTT
CTTGAAGTGGAAGCGAGAGAGTAACCTGCGAGAAGTCAAGGTTGCCCGAC
GCTATCATCTTTCCAATCCAAATGAATACCATCAGTATTCAAAAATAATC
GGGGATATCAAACATCTTTGTTCTAAAATTCAGGAACTCGAGCCAGATGA
CCCGACTCGGATCCAGCGCACGGAAGATCTCTTAACGAAGTTATATGACA
TGGGCATCATTTCCATTAAGTCTGGCTTGGGGGAATGTTCTAAGGTGACC
GTTAGTGCAATCTGTCGAAGAAGGTTGCCAGTGGTGATGAAGAGACTGAA
GTTCGCGGAGAATCACACCGAGGCGATAACTCTGATTGAACAAGGACATA
TTCGAGTTGGGCCTACTCCAGTGAAGGATCCTGCTATGCTAGTGACTAGA
AACATGGAAGACTTCATTACGTGGGTAGATACAAGTAAGATCAAACGCAA
AGTGTCTCAGTTTAATGACAATCTGGATGACTATGATCTTCTGAACGCAT
AG
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