Ggra5203.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra5203.t1
Unique NameGgra5203.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length184
Homology
BLAST of Ggra5203.t1 vs. uniprot
Match: A0A2V3JCC8 (U3 small nucleolar ribonucleoprotein imp3 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3JCC8_9FLOR)

HSP 1 Score: 336 bits (861), Expect = 3.320e-116
Identity = 163/183 (89.07%), Postives = 174/183 (95.08%), Query Frame = 0
Query:    1 MRKLKYHEYKLLRKADFLKWKRESNLREVKVARRYHLSNPNEYHQYSKIIGDIKHLCSKIQELEPDDPTRIQRTEDLLTKLYDMGIISIKSGLGECSKVTVSAICRRRLPVVMKRLKFAENHTEAITLIEQGHIRVGPTPVKDPAMLVTRNMEDFITWVDTSKIKRKVSQFNDNLDDYDLLNA 183
            MRKLKYHEYKLLRKADFLKWKRE NLREVKVARRYHLSNP EYHQYSKI+GD+K LC+KIQEL+PDDP RIQRT+DL+TKLYDMGIIS+KSGL ECSKVTVSAICRRRLPVVMKRLKFAE  TEA TLIEQGHIR+GPT VKDPAML+TR+MEDF+TWVDTSKIKRKVSQFNDNLDDYDLLNA
Sbjct:    1 MRKLKYHEYKLLRKADFLKWKRERNLREVKVARRYHLSNPEEYHQYSKIVGDVKQLCAKIQELKPDDPVRIQRTDDLMTKLYDMGIISLKSGLEECSKVTVSAICRRRLPVVMKRLKFAETLTEATTLIEQGHIRIGPTQVKDPAMLITRSMEDFVTWVDTSKIKRKVSQFNDNLDDYDLLNA 183          
BLAST of Ggra5203.t1 vs. uniprot
Match: A0A7S1TED8 (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TED8_9RHOD)

HSP 1 Score: 249 bits (637), Expect = 4.290e-82
Identity = 113/181 (62.43%), Postives = 152/181 (83.98%), Query Frame = 0
Query:    1 MRKLKYHEYKLLRKADFLKWKRESNLREVKVARRYHLSNPNEYHQYSKIIGDIKHLCSKIQELEPDDPTRIQRTEDLLTKLYDMGIISIKSGLGECSKVTVSAICRRRLPVVMKRLKFAENHTEAITLIEQGHIRVGPTPVKDPAMLVTRNMEDFITWVDTSKIKRKVSQFNDNLDDYDLL 181
            MRKLK+HEYKLL+K DFL+WK+E +LRE  V +RY + NP +YH+Y+K++G I  L +K+++L+P D  R++RTE LL K+YDMG+I++K  L +C+K++VS+ CRRRLPVVM RL+FAEN  EA++LIEQGH+R+GPT V+DPA+LVTR MEDFITW +TSKIKRK+ +FND LDD+DLL
Sbjct:    1 MRKLKFHEYKLLKKVDFLQWKKEKSLREYGVRKRYRIQNPEDYHKYNKLVGLITSLANKLKQLDPADALRVERTEQLLVKMYDMGLITVKKNLEQCAKLSVSSFCRRRLPVVMVRLRFAENLLEAVSLIEQGHVRIGPTLVRDPALLVTRTMEDFITWSNTSKIKRKILKFNDKLDDFDLL 181          
BLAST of Ggra5203.t1 vs. uniprot
Match: M2XX62 (RNA-binding protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XX62_GALSU)

HSP 1 Score: 244 bits (624), Expect = 3.950e-80
Identity = 115/181 (63.54%), Postives = 143/181 (79.01%), Query Frame = 0
Query:    1 MRKLKYHEYKLLRKADFLKWKRESNLREVKVARRYHLSNPNEYHQYSKIIGDIKHLCSKIQELEPDDPTRIQRTEDLLTKLYDMGIISIKSGLGECSKVTVSAICRRRLPVVMKRLKFAENHTEAITLIEQGHIRVGPTPVKDPAMLVTRNMEDFITWVDTSKIKRKVSQFNDNLDDYDLL 181
            MR LKYHE+KLL+KADFL+WK+E NL E ++ RRY +  P +YHQY+K+ G IK L  KI+EL+P D  R++ T+ LL KLY+MGII +K  L +C+K+TVS+ CRRRL VV+ RLK+AEN  EA T +EQGHIR+GP  V DPA+LVTRNMEDFITW D SKIKRK+ Q+ND LDDYDLL
Sbjct:    1 MRVLKYHEFKLLKKADFLQWKKERNLHETRIIRRYRIQRPEDYHQYNKLCGRIKKLAEKIKELDPSDKKRVEYTDILLEKLYEMGIIPLKRSLEQCAKITVSSFCRRRLAVVLVRLKYAENLKEATTFVEQGHIRIGPHQVTDPALLVTRNMEDFITWTDHSKIKRKILQYNDQLDDYDLL 181          
BLAST of Ggra5203.t1 vs. uniprot
Match: U9T5X8 (30S ribosomal protein S4 n=10 Tax=Glomeromycetes TaxID=214506 RepID=U9T5X8_RHIID)

HSP 1 Score: 234 bits (597), Expect = 5.230e-76
Identity = 111/181 (61.33%), Postives = 137/181 (75.69%), Query Frame = 0
Query:    1 MRKLKYHEYKLLRKADFLKWKRESNLREVKVARRYHLSNPNEYHQYSKIIGDIKHLCSKIQELEPDDPTRIQRTEDLLTKLYDMGIISIKSGLGECSKVTVSAICRRRLPVVMKRLKFAENHTEAITLIEQGHIRVGPTPVKDPAMLVTRNMEDFITWVDTSKIKRKVSQFNDNLDDYDLL 181
            +RKLKYHE KLL+K DFL+WK E N+RE+KV RRYHL    +YH+Y+K+ G IK L ++I  L+P DP R ++   LL KLY MG+I+ +    +  K+ VS  CRRRLP+VM RLK AEN  EA+T IEQGHIRVGP  V DPA LVTRN+EDF+TWVDTSKIKRK+ ++ND LDDYDLL
Sbjct:    2 VRKLKYHEQKLLKKVDFLQWKNEDNIREIKVIRRYHLQKREDYHKYNKLCGSIKKLANRISLLDPRDPFRSKQETSLLDKLYSMGLITSRKQFSQVDKINVSVFCRRRLPIVMCRLKMAENVKEAVTFIEQGHIRVGPETVTDPAYLVTRNLEDFVTWVDTSKIKRKIMKYNDKLDDYDLL 182          
BLAST of Ggra5203.t1 vs. uniprot
Match: A0A2K1JL39 (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JL39_PHYPA)

HSP 1 Score: 233 bits (593), Expect = 2.130e-75
Identity = 111/182 (60.99%), Postives = 139/182 (76.37%), Query Frame = 0
Query:    1 MRKLKYHEYKLLRKADFLKWKRESNLREVKVARRYHLSNPNEYHQYSKIIGDIKHLCSKIQELEPDDPTRIQRTEDLLTKLYDMGIISIKSGLGECSKVTVSAICRRRLPVVMKRLKFAENHTEAITLIEQGHIRVGPTPVKDPAMLVTRNMEDFITWVDTSKIKRKVSQFNDNLDDYDLLN 182
            MRKLKYHE KLL+K +FL+WK+E    E++V RRYH++   +Y +Y+KI G +  L + ++++ P DPTRI+ TE LL KLY MG+I  K  L  C+K+TVS ICRRRL VVM RL  AEN  EA+T +EQGHIRVGP  + +PA LVTRNMEDF+TWVD+SKIKRKV Q+ND LDDYDLLN
Sbjct:    1 MRKLKYHEQKLLKKVNFLEWKKERGEHELRVMRRYHITGREDYQEYNKICGMVTKLVTMLKKMNPQDPTRIEMTEALLEKLYSMGVIPSKKSLALCNKLTVSTICRRRLAVVMLRLNMAENMREAVTFVEQGHIRVGPDTITEPAFLVTRNMEDFVTWVDSSKIKRKVLQYNDRLDDYDLLN 182          
BLAST of Ggra5203.t1 vs. uniprot
Match: L1JBM1 (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JBM1_GUITC)

HSP 1 Score: 231 bits (590), Expect = 6.280e-75
Identity = 109/183 (59.56%), Postives = 143/183 (78.14%), Query Frame = 0
Query:    1 MRKLKYHEYKLLRKADFLKWKRESNLREVKVARRYHLSNPNEYHQYSKIIGDIKHLCSKIQELEPDDPTRIQRTEDLLTKLYDMGIISIKSGLGECSKVTVSAICRRRLPVVMKRLKFAENHTEAITLIEQGHIRVGPTPVKDPAMLVTRNMEDFITWVDTSKIKRKVSQFNDNLDDYDLLNA 183
            MR+LKYHE KLL+K +F +WK + N+RE+++ RRY + N ++YH+Y+KI G I  L SK++EL  DDPTR++ TE L+ KLY+MG+IS K  L +C K+  SA CRRRLPVV+ RLKF EN  EA+T +EQGHIR+GP  V DPA  VTR+MEDFITWVD+SKI+RKV ++ND +DD+DLL A
Sbjct:    1 MRQLKYHEEKLLKKVNFFQWKSDKNVREIQILRRYRVQNRDDYHKYNKIAGLITKLTSKLKELRQDDPTRVKTTELLIDKLYNMGLISTKKSLLQCEKIPTSAFCRRRLPVVLVRLKFCENLKEAVTFVEQGHIRIGPEVVTDPAFHVTRSMEDFITWVDSSKIRRKVMKYNDAVDDFDLLQA 183          
BLAST of Ggra5203.t1 vs. uniprot
Match: A0A162ZBX3 (Uncharacterized protein n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A162ZBX3_PHYB8)

HSP 1 Score: 231 bits (589), Expect = 8.340e-75
Identity = 110/181 (60.77%), Postives = 140/181 (77.35%), Query Frame = 0
Query:    1 MRKLKYHEYKLLRKADFLKWKRESNLREVKVARRYHLSNPNEYHQYSKIIGDIKHLCSKIQELEPDDPTRIQRTEDLLTKLYDMGIISIKSGLGECSKVTVSAICRRRLPVVMKRLKFAENHTEAITLIEQGHIRVGPTPVKDPAMLVTRNMEDFITWVDTSKIKRKVSQFNDNLDDYDLL 181
            MR+LK+HE KLL+K DFL+WK++ ++RE+KV R+YHL    +Y +Y+K+ G IK L +KI  L+  DP R ++ + LL KLY MGII+  S   +C+KVTVSA CRRRLP+VM RLK AE   EAIT IEQGH+RVGP P+ DPA LVTR MEDF+TWVDTSKIKRK+ ++ND LDD+DLL
Sbjct:    1 MRQLKHHEQKLLKKVDFLQWKKDDSIREIKVIRKYHLQKREDYQKYNKLAGSIKKLANKISLLDSRDPFRAEQEKALLNKLYTMGIITSVSKFSDCNKVTVSAFCRRRLPIVMCRLKMAETVKEAITFIEQGHVRVGPQPITDPAFLVTRTMEDFVTWVDTSKIKRKILKYNDKLDDFDLL 181          
BLAST of Ggra5203.t1 vs. uniprot
Match: A0A0L0SML7 (Ribosomal protein S4 n=2 Tax=Allomyces macrogynus (strain ATCC 38327) TaxID=578462 RepID=A0A0L0SML7_ALLM3)

HSP 1 Score: 230 bits (587), Expect = 1.740e-74
Identity = 107/181 (59.12%), Postives = 139/181 (76.80%), Query Frame = 0
Query:    1 MRKLKYHEYKLLRKADFLKWKRESNLREVKVARRYHLSNPNEYHQYSKIIGDIKHLCSKIQELEPDDPTRIQRTEDLLTKLYDMGIISIKSGLGECSKVTVSAICRRRLPVVMKRLKFAENHTEAITLIEQGHIRVGPTPVKDPAMLVTRNMEDFITWVDTSKIKRKVSQFNDNLDDYDLL 181
            +R+LK+HE KLL+K DFL+WK E+NLRE++V RRYH+    +Y +Y+++ G I+ L  +I  L+  DP +  +T+ LLTKLY+MG +  K  L +C K+TVSA+CRRRLP+VM RLK AE   EA+T +EQGHIRVGP  V DPA LVTRN EDFITWVDTSKIKRK+ ++ND LDD+DLL
Sbjct:    2 VRQLKHHEQKLLKKVDFLQWKNENNLREIQVMRRYHIQKREDYTKYNRLCGQIRQLAHRISLLDARDPFKAHKTDALLTKLYNMGFLPTKKALSQCEKITVSAVCRRRLPIVMVRLKMAETVREAVTFVEQGHIRVGPQVVTDPAFLVTRNFEDFITWVDTSKIKRKIMKYNDKLDDFDLL 182          
BLAST of Ggra5203.t1 vs. uniprot
Match: A0A1X2HIB1 (30S ribosomal protein S4 n=1 Tax=Syncephalastrum racemosum TaxID=13706 RepID=A0A1X2HIB1_SYNRA)

HSP 1 Score: 230 bits (586), Expect = 2.390e-74
Identity = 108/181 (59.67%), Postives = 140/181 (77.35%), Query Frame = 0
Query:    1 MRKLKYHEYKLLRKADFLKWKRESNLREVKVARRYHLSNPNEYHQYSKIIGDIKHLCSKIQELEPDDPTRIQRTEDLLTKLYDMGIISIKSGLGECSKVTVSAICRRRLPVVMKRLKFAENHTEAITLIEQGHIRVGPTPVKDPAMLVTRNMEDFITWVDTSKIKRKVSQFNDNLDDYDLL 181
            MR+LKYHE KLL+K DF +WK +  LRE++V RRYH+    +YH+Y+K+ G+IK + +++  L+  DP R ++ + LL KLY MGII+ KS   +C+KVTVSA CRRRLPVVM RLK +E   EA+T IEQGH+RVGP P+ DPA LVTR MEDF+TWVDTSKIKRK+ ++ND LDD+DLL
Sbjct:    1 MRQLKYHEQKLLKKVDFYQWKSDDTLREIQVMRRYHIQKREDYHKYNKLAGEIKKIANRLSLLDARDPYRAKQEKALLDKLYAMGIITSKSKFSDCNKVTVSAFCRRRLPVVMCRLKMSETVKEAVTYIEQGHVRVGPKPMTDPAFLVTRTMEDFVTWVDTSKIKRKIMKYNDKLDDFDLL 181          
BLAST of Ggra5203.t1 vs. uniprot
Match: A0A7S0VRX3 (Hypothetical protein n=1 Tax=Polytomella parva TaxID=51329 RepID=A0A7S0VRX3_9CHLO)

HSP 1 Score: 229 bits (585), Expect = 3.500e-74
Identity = 114/181 (62.98%), Postives = 139/181 (76.80%), Query Frame = 0
Query:    1 MRKLKYHEYKLLRKADFLKWKRESNLREVKVARRYHLSNPNEYHQYSKIIGDIKHLCSKIQELEPDDPTRIQRTEDLLTKLYDMGIISIKSGLGECSKVTVSAICRRRLPVVMKRLKFAENHTEAITLIEQGHIRVGPTPVKDPAMLVTRNMEDFITWVDTSKIKRKVSQFNDNLDDYDLL 181
            MR+LKYHE KLL+K DFL WK + +LRE++V RRYH+ N ++Y +Y+KI G I+ L SK+++L+  DP RI+ T+ LLTKLY+MGII+ K  L +C K+ VSA CRRRL VVM RLK AE    A TLIEQGHIRVGP  V DPA  VT NMEDF+TWVD SKIKRKV ++ND LDDYDLL
Sbjct:    1 MRQLKYHEKKLLKKVDFLNWKSDDSLREIQVMRRYHIQNRDDYKKYNKIAGYIQKLTSKLKQLDSTDPERIEMTDQLLTKLYNMGIITAKKSLVQCEKLAVSAFCRRRLSVVMVRLKMAETLKVACTLIEQGHIRVGPETVMDPAYHVTLNMEDFVTWVDNSKIKRKVLKYNDKLDDYDLL 181          
The following BLAST results are available for this feature:
BLAST of Ggra5203.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3JCC83.320e-11689.07U3 small nucleolar ribonucleoprotein imp3 n=1 Tax=... [more]
A0A7S1TED84.290e-8262.43Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
M2XX623.950e-8063.54RNA-binding protein n=1 Tax=Galdieria sulphuraria ... [more]
U9T5X85.230e-7661.3330S ribosomal protein S4 n=10 Tax=Glomeromycetes T... [more]
A0A2K1JL392.130e-7560.99Uncharacterized protein n=2 Tax=Physcomitrium pate... [more]
L1JBM16.280e-7559.56Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A162ZBX38.340e-7560.77Uncharacterized protein n=1 Tax=Phycomyces blakesl... [more]
A0A0L0SML71.740e-7459.12Ribosomal protein S4 n=2 Tax=Allomyces macrogynus ... [more]
A0A1X2HIB12.390e-7459.6730S ribosomal protein S4 n=1 Tax=Syncephalastrum r... [more]
A0A7S0VRX33.500e-7462.98Hypothetical protein n=1 Tax=Polytomella parva Tax... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002942RNA-binding S4 domainSMARTSM00363s4_6coord: 107..170
e-value: 3.0E-5
score: 33.4
IPR002942RNA-binding S4 domainPFAMPF01479S4coord: 107..153
e-value: 3.2E-11
score: 42.8
IPR002942RNA-binding S4 domainCDDcd00165S4coord: 107..176
e-value: 2.98192E-6
score: 41.4662
IPR001912Ribosomal protein S4/S9, N-terminalSMARTSM01390Ribosomal_S4_2coord: 3..106
e-value: 6.6E-23
score: 92.1
IPR001912Ribosomal protein S4/S9, N-terminalPFAMPF00163Ribosomal_S4coord: 3..60
e-value: 8.5E-7
score: 29.8
IPR036986RNA-binding S4 domain superfamilyGENE3D3.10.290.10coord: 107..182
e-value: 9.9E-6
score: 27.7
IPR022801Ribosomal protein S4/S9PANTHERPTHR1183130S 40S RIBOSOMAL PROTEINcoord: 1..181
NoneNo IPR availablePANTHERPTHR11831:SF1U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP3coord: 1..181
NoneNo IPR availablePROSITEPS50889S4coord: 107..173
score: 10.648075
NoneNo IPR availableSUPERFAMILY55174Alpha-L RNA-binding motifcoord: 26..171

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:747909..748460 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5203.t1Ggra5203.t1Gracilaria gracilis GNS1m malemRNAtig00000069_pilon 747909..748460 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra5203.t1 ID=Ggra5203.t1|Name=Ggra5203.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=184bp
MRKLKYHEYKLLRKADFLKWKRESNLREVKVARRYHLSNPNEYHQYSKII
GDIKHLCSKIQELEPDDPTRIQRTEDLLTKLYDMGIISIKSGLGECSKVT
VSAICRRRLPVVMKRLKFAENHTEAITLIEQGHIRVGPTPVKDPAMLVTR
NMEDFITWVDTSKIKRKVSQFNDNLDDYDLLNA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002942S4_RNA-bd
IPR001912Ribosomal_S4/S9_N
IPR036986S4_RNA-bd_sf
IPR022801Ribosomal_S4/S9