Ggra5070.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5070.t1
Unique NameGgra5070.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length493
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:384877..386355 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog9478.XP_008047579.1
Preferred nameNARFL
PFAMsFe_hyd_SSU,Fe_hyd_lg_C
Max annot lvl33208|Metazoa
GOsGO:0001525,GO:0001568,GO:0001666,GO:0001944,GO:0002040,GO:0002244,GO:0002376,GO:0002520,GO:0003674,GO:0003824,GO:0003954,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006790,GO:0006950,GO:0007275,GO:0008150,GO:0008152,GO:0009628,GO:0009653,GO:0009987,GO:0010468,GO:0016043,GO:0016226,GO:0016491,GO:0016651,GO:0019222,GO:0022607,GO:0030097,GO:0030154,GO:0031163,GO:0032364,GO:0032501,GO:0032502,GO:0032991,GO:0033483,GO:0035239,GO:0035295,GO:0036293,GO:0042592,GO:0044085,GO:0044237,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0048037,GO:0048513,GO:0048514,GO:0048534,GO:0048646,GO:0048731,GO:0048856,GO:0048869,GO:0048878,GO:0050789,GO:0050896,GO:0051186,GO:0051536,GO:0051540,GO:0055114,GO:0060255,GO:0065007,GO:0065008,GO:0070482,GO:0071840,GO:0072358,GO:0072359,GO:0097361
Evalue5.99e-89
EggNOG OGsCOG4624@1|root,KOG2439@2759|Eukaryota,38CSY@33154|Opisthokonta,3BES4@33208|Metazoa,3CRC3@33213|Bilateria,486EC@7711|Chordata,48W34@7742|Vertebrata,3J2CQ@40674|Mammalia,35ESC@314146|Euarchontoglires,4MGMG@9443|Primates
Descriptioniron-sulfur cluster assembly
COG categoryY
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5070Ggra5070Gracilaria gracilis GNS1m malegenetig00000069_pilon 384877..386355 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5070.t1.stop1Ggra5070.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000069_pilon 384877..384879 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5070.t1.CDS1Ggra5070.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000069_pilon 384877..386355 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5070.t1.exon1Ggra5070.t1.exon1Gracilaria gracilis GNS1m maleexontig00000069_pilon 384877..386355 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5070.t1.start1Ggra5070.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000069_pilon 386353..386355 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5070.t1Ggra5070.t1Gracilaria gracilis GNS1m malepolypeptidetig00000069_pilon 384877..386355 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5070.t1 ID=Ggra5070.t1|Name=Ggra5070.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=493bp
MAKSGSQISNVLRITDVNDFLAPSTACVLPLEGGAQPSSNGNVDVIKLES
APAGSVLAPIVPTQTPISGVAKAKVTISDCLACSGCVTSAETVLLSNASL
ETFRSFIQLGEEQKSKAFSVVALSQQSVASIAVHFGLQLTETARKLTTYL
KEVCHIDIVLDLSLPRHLSLIEASKEFIERFRSGKQLTITSSCPGWLTYA
EKTQGDIVLDCVSSVRSPQGMLASIAPYFRPPGENRPTWVCTIMPCHDKK
LEASRPEFVRQEDQEQASKDIDCVLTTGELLELLEENQFDLSSAAETCLN
SKYSPSGTGEFGVNVGSSSGGYAEFILKAASKELLGVDLPVGKIITKKAS
RSGDLHTATISNNEGKTLTFATAYGFRCLQTILRKVRQGQCMYNYIELMA
CPGGCTNGGGQISLPENADGDLRSWKHQADSHLKRVNDVFHAAPTVPNPL
TISVVPELYQRLFPDGDESSARQPLMVQIQSRKTDGLASISW*
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spliced messenger RNA

>Ggra5070.t1 ID=Ggra5070.t1|Name=Ggra5070.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1479bp|location=Sequence derived from alignment at tig00000069_pilon:384877..386355- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGAAAAGTGGATCCCAGATTTCTAATGTCTTACGAATTACTGATGT
AAATGACTTCCTCGCCCCGTCTACAGCTTGTGTGCTACCTTTAGAAGGAG
GAGCTCAGCCTTCTTCAAATGGAAATGTGGATGTTATCAAGCTTGAAAGT
GCACCGGCTGGCTCAGTTTTGGCGCCAATCGTACCAACTCAGACTCCCAT
ATCGGGCGTTGCCAAAGCGAAGGTCACCATAAGCGACTGCCTCGCTTGCT
CTGGTTGTGTGACGTCAGCCGAGACCGTTCTTCTCTCCAACGCGAGTCTT
GAAACCTTCAGGAGTTTTATTCAGCTAGGCGAAGAGCAGAAGTCGAAGGC
ATTCTCGGTTGTTGCTCTTTCACAGCAGTCTGTCGCCTCAATTGCGGTGC
ATTTCGGACTGCAATTGACTGAAACGGCCAGGAAGCTAACAACTTATCTA
AAAGAAGTGTGTCACATAGATATCGTTCTGGATCTTTCCCTTCCACGTCA
TCTTTCACTCATCGAAGCGAGCAAGGAGTTCATTGAGCGATTTCGCTCTG
GGAAACAGCTTACAATTACCTCTAGCTGTCCTGGATGGCTGACTTACGCG
GAAAAGACTCAGGGAGACATAGTTCTGGACTGTGTATCTTCGGTAAGATC
CCCACAAGGCATGCTTGCGTCTATAGCGCCATATTTTCGACCGCCAGGCG
AAAACAGACCGACTTGGGTATGCACGATTATGCCGTGCCATGATAAGAAG
CTCGAAGCTAGCAGGCCCGAGTTTGTTCGACAAGAAGACCAGGAACAAGC
GTCGAAGGACATCGACTGCGTCTTGACTACAGGTGAGCTTCTTGAGCTTT
TGGAAGAGAATCAGTTTGACTTATCATCAGCGGCAGAGACTTGCCTGAAT
TCAAAGTATTCTCCCTCTGGTACCGGGGAGTTTGGAGTTAATGTTGGAAG
TAGTTCCGGTGGATATGCCGAGTTTATTCTCAAGGCAGCATCGAAGGAGC
TTCTAGGAGTTGATCTACCAGTTGGAAAGATAATCACTAAGAAAGCAAGT
AGATCTGGGGATCTACACACAGCAACCATATCTAACAATGAGGGAAAAAC
TCTTACTTTTGCTACAGCGTACGGATTCCGATGCTTGCAGACTATTTTGC
GGAAGGTTCGACAAGGGCAGTGCATGTACAACTATATTGAACTTATGGCA
TGCCCAGGAGGATGCACAAATGGAGGGGGACAAATATCACTTCCTGAGAA
TGCCGATGGCGACTTACGGAGTTGGAAACATCAAGCAGATAGTCACTTGA
AAAGGGTAAACGATGTTTTCCATGCTGCCCCAACAGTACCAAATCCGCTC
ACCATTTCTGTTGTCCCAGAGCTGTACCAAAGATTGTTTCCGGATGGAGA
CGAATCAAGTGCACGCCAGCCATTAATGGTACAGATCCAGTCTCGGAAGA
CGGATGGTTTAGCTTCCATATCATGGTAA
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protein sequence of Ggra5070.t1

>Ggra5070.t1 ID=Ggra5070.t1|Name=Ggra5070.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=493bp
MAKSGSQISNVLRITDVNDFLAPSTACVLPLEGGAQPSSNGNVDVIKLES
APAGSVLAPIVPTQTPISGVAKAKVTISDCLACSGCVTSAETVLLSNASL
ETFRSFIQLGEEQKSKAFSVVALSQQSVASIAVHFGLQLTETARKLTTYL
KEVCHIDIVLDLSLPRHLSLIEASKEFIERFRSGKQLTITSSCPGWLTYA
EKTQGDIVLDCVSSVRSPQGMLASIAPYFRPPGENRPTWVCTIMPCHDKK
LEASRPEFVRQEDQEQASKDIDCVLTTGELLELLEENQFDLSSAAETCLN
SKYSPSGTGEFGVNVGSSSGGYAEFILKAASKELLGVDLPVGKIITKKAS
RSGDLHTATISNNEGKTLTFATAYGFRCLQTILRKVRQGQCMYNYIELMA
CPGGCTNGGGQISLPENADGDLRSWKHQADSHLKRVNDVFHAAPTVPNPL
TISVVPELYQRLFPDGDESSARQPLMVQIQSRKTDGLASISW*
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mRNA from alignment at tig00000069_pilon:384877..386355-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5070.t1 ID=Ggra5070.t1|Name=Ggra5070.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1479bp|location=Sequence derived from alignment at tig00000069_pilon:384877..386355- (Gracilaria gracilis GNS1m male)
ATGGCGAAAAGTGGATCCCAGATTTCTAATGTCTTACGAATTACTGATGT
AAATGACTTCCTCGCCCCGTCTACAGCTTGTGTGCTACCTTTAGAAGGAG
GAGCTCAGCCTTCTTCAAATGGAAATGTGGATGTTATCAAGCTTGAAAGT
GCACCGGCTGGCTCAGTTTTGGCGCCAATCGTACCAACTCAGACTCCCAT
ATCGGGCGTTGCCAAAGCGAAGGTCACCATAAGCGACTGCCTCGCTTGCT
CTGGTTGTGTGACGTCAGCCGAGACCGTTCTTCTCTCCAACGCGAGTCTT
GAAACCTTCAGGAGTTTTATTCAGCTAGGCGAAGAGCAGAAGTCGAAGGC
ATTCTCGGTTGTTGCTCTTTCACAGCAGTCTGTCGCCTCAATTGCGGTGC
ATTTCGGACTGCAATTGACTGAAACGGCCAGGAAGCTAACAACTTATCTA
AAAGAAGTGTGTCACATAGATATCGTTCTGGATCTTTCCCTTCCACGTCA
TCTTTCACTCATCGAAGCGAGCAAGGAGTTCATTGAGCGATTTCGCTCTG
GGAAACAGCTTACAATTACCTCTAGCTGTCCTGGATGGCTGACTTACGCG
GAAAAGACTCAGGGAGACATAGTTCTGGACTGTGTATCTTCGGTAAGATC
CCCACAAGGCATGCTTGCGTCTATAGCGCCATATTTTCGACCGCCAGGCG
AAAACAGACCGACTTGGGTATGCACGATTATGCCGTGCCATGATAAGAAG
CTCGAAGCTAGCAGGCCCGAGTTTGTTCGACAAGAAGACCAGGAACAAGC
GTCGAAGGACATCGACTGCGTCTTGACTACAGGTGAGCTTCTTGAGCTTT
TGGAAGAGAATCAGTTTGACTTATCATCAGCGGCAGAGACTTGCCTGAAT
TCAAAGTATTCTCCCTCTGGTACCGGGGAGTTTGGAGTTAATGTTGGAAG
TAGTTCCGGTGGATATGCCGAGTTTATTCTCAAGGCAGCATCGAAGGAGC
TTCTAGGAGTTGATCTACCAGTTGGAAAGATAATCACTAAGAAAGCAAGT
AGATCTGGGGATCTACACACAGCAACCATATCTAACAATGAGGGAAAAAC
TCTTACTTTTGCTACAGCGTACGGATTCCGATGCTTGCAGACTATTTTGC
GGAAGGTTCGACAAGGGCAGTGCATGTACAACTATATTGAACTTATGGCA
TGCCCAGGAGGATGCACAAATGGAGGGGGACAAATATCACTTCCTGAGAA
TGCCGATGGCGACTTACGGAGTTGGAAACATCAAGCAGATAGTCACTTGA
AAAGGGTAAACGATGTTTTCCATGCTGCCCCAACAGTACCAAATCCGCTC
ACCATTTCTGTTGTCCCAGAGCTGTACCAAAGATTGTTTCCGGATGGAGA
CGAATCAAGTGCACGCCAGCCATTAATGGTACAGATCCAGTCTCGGAAGA
CGGATGGTTTAGCTTCCATATCATGGTAA
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Coding sequence (CDS) from alignment at tig00000069_pilon:384877..386355-

>Ggra5070.t1 ID=Ggra5070.t1|Name=Ggra5070.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1479bp|location=Sequence derived from alignment at tig00000069_pilon:384877..386355- (Gracilaria gracilis GNS1m male)
ATGGCGAAAAGTGGATCCCAGATTTCTAATGTCTTACGAATTACTGATGT
AAATGACTTCCTCGCCCCGTCTACAGCTTGTGTGCTACCTTTAGAAGGAG
GAGCTCAGCCTTCTTCAAATGGAAATGTGGATGTTATCAAGCTTGAAAGT
GCACCGGCTGGCTCAGTTTTGGCGCCAATCGTACCAACTCAGACTCCCAT
ATCGGGCGTTGCCAAAGCGAAGGTCACCATAAGCGACTGCCTCGCTTGCT
CTGGTTGTGTGACGTCAGCCGAGACCGTTCTTCTCTCCAACGCGAGTCTT
GAAACCTTCAGGAGTTTTATTCAGCTAGGCGAAGAGCAGAAGTCGAAGGC
ATTCTCGGTTGTTGCTCTTTCACAGCAGTCTGTCGCCTCAATTGCGGTGC
ATTTCGGACTGCAATTGACTGAAACGGCCAGGAAGCTAACAACTTATCTA
AAAGAAGTGTGTCACATAGATATCGTTCTGGATCTTTCCCTTCCACGTCA
TCTTTCACTCATCGAAGCGAGCAAGGAGTTCATTGAGCGATTTCGCTCTG
GGAAACAGCTTACAATTACCTCTAGCTGTCCTGGATGGCTGACTTACGCG
GAAAAGACTCAGGGAGACATAGTTCTGGACTGTGTATCTTCGGTAAGATC
CCCACAAGGCATGCTTGCGTCTATAGCGCCATATTTTCGACCGCCAGGCG
AAAACAGACCGACTTGGGTATGCACGATTATGCCGTGCCATGATAAGAAG
CTCGAAGCTAGCAGGCCCGAGTTTGTTCGACAAGAAGACCAGGAACAAGC
GTCGAAGGACATCGACTGCGTCTTGACTACAGGTGAGCTTCTTGAGCTTT
TGGAAGAGAATCAGTTTGACTTATCATCAGCGGCAGAGACTTGCCTGAAT
TCAAAGTATTCTCCCTCTGGTACCGGGGAGTTTGGAGTTAATGTTGGAAG
TAGTTCCGGTGGATATGCCGAGTTTATTCTCAAGGCAGCATCGAAGGAGC
TTCTAGGAGTTGATCTACCAGTTGGAAAGATAATCACTAAGAAAGCAAGT
AGATCTGGGGATCTACACACAGCAACCATATCTAACAATGAGGGAAAAAC
TCTTACTTTTGCTACAGCGTACGGATTCCGATGCTTGCAGACTATTTTGC
GGAAGGTTCGACAAGGGCAGTGCATGTACAACTATATTGAACTTATGGCA
TGCCCAGGAGGATGCACAAATGGAGGGGGACAAATATCACTTCCTGAGAA
TGCCGATGGCGACTTACGGAGTTGGAAACATCAAGCAGATAGTCACTTGA
AAAGGGTAAACGATGTTTTCCATGCTGCCCCAACAGTACCAAATCCGCTC
ACCATTTCTGTTGTCCCAGAGCTGTACCAAAGATTGTTTCCGGATGGAGA
CGAATCAAGTGCACGCCAGCCATTAATGGTACAGATCCAGTCTCGGAAGA
CGGATGGTTTAGCTTCCATATCATGGTAA
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