Ggra5053.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra5053.t1
Unique Name	Ggra5053.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	675

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000069_pilon	contig	tig00000069_pilon:342953..344977 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	159749.K0T2Z7
PFAMs	DEP,Pyr_redox_2,Pyr_redox_dim
Max annot lvl	2836\|Bacillariophyta
Evalue	1.06e-242
EggNOG OGs	COG1249@1\|root,KOG1335@2759\|Eukaryota,2XE28@2836\|Bacillariophyta
Description	Glucose inhibited division protein A
COG category	C

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra5053	Ggra5053	Gracilaria gracilis GNS1m male	gene	tig00000069_pilon 342953..344977 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5053.t1.stop1	Ggra5053.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000069_pilon 342953..342955 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5053.t1.CDS1	Ggra5053.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000069_pilon 342953..344977 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5053.t1.exon1	Ggra5053.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000069_pilon 342953..344977 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5053.t1.start1	Ggra5053.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000069_pilon 344975..344977 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5053.t1	Ggra5053.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000069_pilon 342953..344977 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000069_pilon:342953..344977-
coding sequence from alignment at tig00000069_pilon:342953..344977-

mRNA sequence

>Ggra5053.t1 ID=Ggra5053.t1|Name=Ggra5053.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=675bp
MSSASVSTDASELDLAELAARFKKNVTIKDRRYRLQTYKNSFVGSEAVQW
LVTSGTAQSRADAVRLGLLMQEAGIIEHCLRDHDFKDGELFYKFIEDSEH
GGVSKTEGRLVTWADFVQTPFSAGRNLQPKMPELKDDSTNAALEVEQSVW
PLDEENIRLLDNVHPPGWIEPVHNGAYNLVVIGAGAGGLVTSAGAAGLGA
KVALIEANRLGGDCLNVGCVPSKSLIHAANLAHTLRDQEHLAEAGLAFDG
PVKIDFGKTMQRLRRVRADISKADAATRYTRKLGVDVYFGYAKFTSDSTV
VVNGKTLTFRKAIIATGGYPAIPPIPGLRELHEKSVKDMDKKPHTAIMTN
ETFFNLTELPRRLGVIGTGVIGMELGQAMQRLGSSVVMFGRSGQVLPKED
KDLSALIKEQMMNDGVSFSLNVATYEVVEHTGKVSAEGYEEIRMITEEDG
ERKEYLFDAMLVATGRKPNVGGLNLKVAGVEYDNKRGLKVNDLLQTTNPR
IYGVGDVCSVYKFTHAADFMARMVIRNALFFGKDKMSNLLIPYATFTTPE
IAHVGLYESDMKEKGIRYKTFEKHFDDNDRAICDGTTVGMVRVHVEEKSD
SILGASIVGAGAGNMISEITLAIQSKTGLGALASVIHPYPTTAEAVRQAG
DLFNRTRLTNTVKQLLRGIVRVQR*

spliced messenger RNA

>Ggra5053.t1 ID=Ggra5053.t1|Name=Ggra5053.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2025bp|location=Sequence derived from alignment at tig00000069_pilon:342953..344977- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGTCTGCTTCCGTCAGTACCGATGCGTCCGAGCTGGACTTGGCCGA
GCTGGCGGCCCGTTTCAAGAAGAATGTCACCATAAAGGATCGTCGCTATC
GGCTGCAAACCTACAAGAACAGCTTCGTAGGGTCGGAGGCTGTGCAATGG
CTCGTTACCAGTGGAACTGCCCAGTCAAGGGCCGATGCCGTGAGACTGGG
ATTGCTCATGCAGGAGGCTGGTATCATTGAACACTGCCTGAGGGATCATG
ATTTCAAGGATGGGGAGCTGTTTTACAAGTTCATCGAAGACTCTGAGCAT
GGAGGAGTGTCCAAGACTGAGGGGCGTCTTGTTACATGGGCCGATTTTGT
TCAAACGCCTTTCAGCGCTGGACGTAATCTTCAGCCAAAGATGCCCGAAT
TAAAAGACGATAGCACCAACGCTGCGTTGGAGGTGGAGCAGTCGGTGTGG
CCCTTGGATGAAGAGAACATCAGATTGTTGGATAATGTGCATCCTCCGGG
ATGGATAGAACCCGTTCATAATGGCGCTTATAATCTTGTGGTGATTGGAG
CTGGCGCTGGTGGACTTGTGACGTCAGCTGGGGCAGCTGGGTTAGGTGCG
AAGGTGGCACTCATTGAGGCGAATCGCCTTGGTGGTGATTGCCTTAACGT
TGGATGTGTTCCTTCCAAATCTCTAATTCATGCTGCGAATCTGGCGCATA
CACTTAGAGACCAGGAGCATTTGGCCGAGGCTGGGCTTGCATTTGATGGG
CCTGTGAAGATCGACTTTGGGAAGACGATGCAGCGTCTTCGACGAGTTCG
TGCGGATATTAGCAAAGCTGATGCTGCCACTCGTTACACAAGGAAGCTTG
GGGTTGATGTTTATTTCGGGTACGCGAAGTTCACATCCGACTCCACTGTG
GTGGTGAATGGAAAGACTTTGACGTTTAGGAAGGCTATCATTGCTACTGG
CGGTTATCCTGCGATTCCGCCGATTCCTGGTCTTCGAGAGTTACATGAGA
AGAGCGTGAAGGACATGGATAAGAAGCCACACACTGCGATTATGACTAAT
GAAACTTTCTTCAATCTTACTGAACTGCCAAGACGTCTTGGCGTTATCGG
AACTGGAGTGATTGGGATGGAGCTTGGTCAGGCCATGCAGAGACTTGGGT
CGTCGGTGGTTATGTTTGGTCGATCGGGGCAGGTGCTACCGAAGGAAGAC
AAGGATCTGAGCGCGCTTATCAAGGAGCAGATGATGAACGATGGGGTATC
GTTTAGCCTGAACGTGGCGACGTACGAGGTGGTGGAGCATACCGGCAAGG
TTTCGGCTGAGGGGTATGAGGAGATCCGAATGATTACTGAGGAGGATGGG
GAGCGGAAGGAATACTTGTTTGATGCGATGCTGGTGGCCACTGGGAGGAA
GCCAAACGTGGGTGGCTTGAATCTAAAGGTTGCTGGCGTTGAATACGATA
ACAAACGCGGGCTGAAGGTGAACGATTTGTTGCAAACTACCAACCCCAGG
ATTTATGGAGTGGGAGATGTGTGTAGTGTGTACAAGTTCACGCACGCTGC
GGACTTTATGGCGAGAATGGTGATTCGAAACGCTCTATTCTTCGGGAAAG
ATAAGATGTCGAACCTTCTCATCCCGTATGCGACGTTCACCACACCGGAG
ATTGCTCATGTGGGACTGTACGAATCTGACATGAAGGAGAAGGGAATCAG
GTACAAGACGTTTGAAAAGCACTTCGATGACAATGACCGTGCTATATGTG
ATGGGACTACGGTTGGAATGGTGCGCGTTCATGTTGAAGAAAAGTCGGAC
TCTATATTAGGCGCTTCGATTGTTGGAGCTGGGGCGGGTAACATGATCAG
TGAGATTACACTCGCTATACAGTCGAAGACGGGATTAGGGGCGCTTGCTT
CGGTGATCCACCCGTACCCTACGACTGCTGAGGCTGTTCGACAGGCTGGA
GATCTATTCAACCGCACTCGTTTAACTAATACTGTGAAGCAATTACTTCG
CGGTATTGTGCGTGTACAACGTTAG

protein sequence of Ggra5053.t1

>Ggra5053.t1 ID=Ggra5053.t1|Name=Ggra5053.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=675bp
MSSASVSTDASELDLAELAARFKKNVTIKDRRYRLQTYKNSFVGSEAVQW
LVTSGTAQSRADAVRLGLLMQEAGIIEHCLRDHDFKDGELFYKFIEDSEH
GGVSKTEGRLVTWADFVQTPFSAGRNLQPKMPELKDDSTNAALEVEQSVW
PLDEENIRLLDNVHPPGWIEPVHNGAYNLVVIGAGAGGLVTSAGAAGLGA
KVALIEANRLGGDCLNVGCVPSKSLIHAANLAHTLRDQEHLAEAGLAFDG
PVKIDFGKTMQRLRRVRADISKADAATRYTRKLGVDVYFGYAKFTSDSTV
VVNGKTLTFRKAIIATGGYPAIPPIPGLRELHEKSVKDMDKKPHTAIMTN
ETFFNLTELPRRLGVIGTGVIGMELGQAMQRLGSSVVMFGRSGQVLPKED
KDLSALIKEQMMNDGVSFSLNVATYEVVEHTGKVSAEGYEEIRMITEEDG
ERKEYLFDAMLVATGRKPNVGGLNLKVAGVEYDNKRGLKVNDLLQTTNPR
IYGVGDVCSVYKFTHAADFMARMVIRNALFFGKDKMSNLLIPYATFTTPE
IAHVGLYESDMKEKGIRYKTFEKHFDDNDRAICDGTTVGMVRVHVEEKSD
SILGASIVGAGAGNMISEITLAIQSKTGLGALASVIHPYPTTAEAVRQAG
DLFNRTRLTNTVKQLLRGIVRVQR*

mRNA from alignment at tig00000069_pilon:342953..344977-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra5053.t1 ID=Ggra5053.t1|Name=Ggra5053.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2025bp|location=Sequence derived from alignment at tig00000069_pilon:342953..344977- (Gracilaria gracilis GNS1m male)
ATGTCGTCTGCTTCCGTCAGTACCGATGCGTCCGAGCTGGACTTGGCCGA
GCTGGCGGCCCGTTTCAAGAAGAATGTCACCATAAAGGATCGTCGCTATC
GGCTGCAAACCTACAAGAACAGCTTCGTAGGGTCGGAGGCTGTGCAATGG
CTCGTTACCAGTGGAACTGCCCAGTCAAGGGCCGATGCCGTGAGACTGGG
ATTGCTCATGCAGGAGGCTGGTATCATTGAACACTGCCTGAGGGATCATG
ATTTCAAGGATGGGGAGCTGTTTTACAAGTTCATCGAAGACTCTGAGCAT
GGAGGAGTGTCCAAGACTGAGGGGCGTCTTGTTACATGGGCCGATTTTGT
TCAAACGCCTTTCAGCGCTGGACGTAATCTTCAGCCAAAGATGCCCGAAT
TAAAAGACGATAGCACCAACGCTGCGTTGGAGGTGGAGCAGTCGGTGTGG
CCCTTGGATGAAGAGAACATCAGATTGTTGGATAATGTGCATCCTCCGGG
ATGGATAGAACCCGTTCATAATGGCGCTTATAATCTTGTGGTGATTGGAG
CTGGCGCTGGTGGACTTGTGACGTCAGCTGGGGCAGCTGGGTTAGGTGCG
AAGGTGGCACTCATTGAGGCGAATCGCCTTGGTGGTGATTGCCTTAACGT
TGGATGTGTTCCTTCCAAATCTCTAATTCATGCTGCGAATCTGGCGCATA
CACTTAGAGACCAGGAGCATTTGGCCGAGGCTGGGCTTGCATTTGATGGG
CCTGTGAAGATCGACTTTGGGAAGACGATGCAGCGTCTTCGACGAGTTCG
TGCGGATATTAGCAAAGCTGATGCTGCCACTCGTTACACAAGGAAGCTTG
GGGTTGATGTTTATTTCGGGTACGCGAAGTTCACATCCGACTCCACTGTG
GTGGTGAATGGAAAGACTTTGACGTTTAGGAAGGCTATCATTGCTACTGG
CGGTTATCCTGCGATTCCGCCGATTCCTGGTCTTCGAGAGTTACATGAGA
AGAGCGTGAAGGACATGGATAAGAAGCCACACACTGCGATTATGACTAAT
GAAACTTTCTTCAATCTTACTGAACTGCCAAGACGTCTTGGCGTTATCGG
AACTGGAGTGATTGGGATGGAGCTTGGTCAGGCCATGCAGAGACTTGGGT
CGTCGGTGGTTATGTTTGGTCGATCGGGGCAGGTGCTACCGAAGGAAGAC
AAGGATCTGAGCGCGCTTATCAAGGAGCAGATGATGAACGATGGGGTATC
GTTTAGCCTGAACGTGGCGACGTACGAGGTGGTGGAGCATACCGGCAAGG
TTTCGGCTGAGGGGTATGAGGAGATCCGAATGATTACTGAGGAGGATGGG
GAGCGGAAGGAATACTTGTTTGATGCGATGCTGGTGGCCACTGGGAGGAA
GCCAAACGTGGGTGGCTTGAATCTAAAGGTTGCTGGCGTTGAATACGATA
ACAAACGCGGGCTGAAGGTGAACGATTTGTTGCAAACTACCAACCCCAGG
ATTTATGGAGTGGGAGATGTGTGTAGTGTGTACAAGTTCACGCACGCTGC
GGACTTTATGGCGAGAATGGTGATTCGAAACGCTCTATTCTTCGGGAAAG
ATAAGATGTCGAACCTTCTCATCCCGTATGCGACGTTCACCACACCGGAG
ATTGCTCATGTGGGACTGTACGAATCTGACATGAAGGAGAAGGGAATCAG
GTACAAGACGTTTGAAAAGCACTTCGATGACAATGACCGTGCTATATGTG
ATGGGACTACGGTTGGAATGGTGCGCGTTCATGTTGAAGAAAAGTCGGAC
TCTATATTAGGCGCTTCGATTGTTGGAGCTGGGGCGGGTAACATGATCAG
TGAGATTACACTCGCTATACAGTCGAAGACGGGATTAGGGGCGCTTGCTT
CGGTGATCCACCCGTACCCTACGACTGCTGAGGCTGTTCGACAGGCTGGA
GATCTATTCAACCGCACTCGTTTAACTAATACTGTGAAGCAATTACTTCG
CGGTATTGTGCGTGTACAACGTTAG

Coding sequence (CDS) from alignment at tig00000069_pilon:342953..344977-

>Ggra5053.t1 ID=Ggra5053.t1|Name=Ggra5053.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2025bp|location=Sequence derived from alignment at tig00000069_pilon:342953..344977- (Gracilaria gracilis GNS1m male)
ATGTCGTCTGCTTCCGTCAGTACCGATGCGTCCGAGCTGGACTTGGCCGA
GCTGGCGGCCCGTTTCAAGAAGAATGTCACCATAAAGGATCGTCGCTATC
GGCTGCAAACCTACAAGAACAGCTTCGTAGGGTCGGAGGCTGTGCAATGG
CTCGTTACCAGTGGAACTGCCCAGTCAAGGGCCGATGCCGTGAGACTGGG
ATTGCTCATGCAGGAGGCTGGTATCATTGAACACTGCCTGAGGGATCATG
ATTTCAAGGATGGGGAGCTGTTTTACAAGTTCATCGAAGACTCTGAGCAT
GGAGGAGTGTCCAAGACTGAGGGGCGTCTTGTTACATGGGCCGATTTTGT
TCAAACGCCTTTCAGCGCTGGACGTAATCTTCAGCCAAAGATGCCCGAAT
TAAAAGACGATAGCACCAACGCTGCGTTGGAGGTGGAGCAGTCGGTGTGG
CCCTTGGATGAAGAGAACATCAGATTGTTGGATAATGTGCATCCTCCGGG
ATGGATAGAACCCGTTCATAATGGCGCTTATAATCTTGTGGTGATTGGAG
CTGGCGCTGGTGGACTTGTGACGTCAGCTGGGGCAGCTGGGTTAGGTGCG
AAGGTGGCACTCATTGAGGCGAATCGCCTTGGTGGTGATTGCCTTAACGT
TGGATGTGTTCCTTCCAAATCTCTAATTCATGCTGCGAATCTGGCGCATA
CACTTAGAGACCAGGAGCATTTGGCCGAGGCTGGGCTTGCATTTGATGGG
CCTGTGAAGATCGACTTTGGGAAGACGATGCAGCGTCTTCGACGAGTTCG
TGCGGATATTAGCAAAGCTGATGCTGCCACTCGTTACACAAGGAAGCTTG
GGGTTGATGTTTATTTCGGGTACGCGAAGTTCACATCCGACTCCACTGTG
GTGGTGAATGGAAAGACTTTGACGTTTAGGAAGGCTATCATTGCTACTGG
CGGTTATCCTGCGATTCCGCCGATTCCTGGTCTTCGAGAGTTACATGAGA
AGAGCGTGAAGGACATGGATAAGAAGCCACACACTGCGATTATGACTAAT
GAAACTTTCTTCAATCTTACTGAACTGCCAAGACGTCTTGGCGTTATCGG
AACTGGAGTGATTGGGATGGAGCTTGGTCAGGCCATGCAGAGACTTGGGT
CGTCGGTGGTTATGTTTGGTCGATCGGGGCAGGTGCTACCGAAGGAAGAC
AAGGATCTGAGCGCGCTTATCAAGGAGCAGATGATGAACGATGGGGTATC
GTTTAGCCTGAACGTGGCGACGTACGAGGTGGTGGAGCATACCGGCAAGG
TTTCGGCTGAGGGGTATGAGGAGATCCGAATGATTACTGAGGAGGATGGG
GAGCGGAAGGAATACTTGTTTGATGCGATGCTGGTGGCCACTGGGAGGAA
GCCAAACGTGGGTGGCTTGAATCTAAAGGTTGCTGGCGTTGAATACGATA
ACAAACGCGGGCTGAAGGTGAACGATTTGTTGCAAACTACCAACCCCAGG
ATTTATGGAGTGGGAGATGTGTGTAGTGTGTACAAGTTCACGCACGCTGC
GGACTTTATGGCGAGAATGGTGATTCGAAACGCTCTATTCTTCGGGAAAG
ATAAGATGTCGAACCTTCTCATCCCGTATGCGACGTTCACCACACCGGAG
ATTGCTCATGTGGGACTGTACGAATCTGACATGAAGGAGAAGGGAATCAG
GTACAAGACGTTTGAAAAGCACTTCGATGACAATGACCGTGCTATATGTG
ATGGGACTACGGTTGGAATGGTGCGCGTTCATGTTGAAGAAAAGTCGGAC
TCTATATTAGGCGCTTCGATTGTTGGAGCTGGGGCGGGTAACATGATCAG
TGAGATTACACTCGCTATACAGTCGAAGACGGGATTAGGGGCGCTTGCTT
CGGTGATCCACCCGTACCCTACGACTGCTGAGGCTGTTCGACAGGCTGGA
GATCTATTCAACCGCACTCGTTTAACTAATACTGTGAAGCAATTACTTCG
CGGTATTGTGCGTGTACAACGTTAG