Ggra5181.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5181.t1
Unique NameGgra5181.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length401
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:692545..693747 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704181.1
Preferred nameSLC35E3
PFAMsTPT
Max annot lvl2759|Eukaryota
KEGG rclassRC00049,RC00059,RC00171,RC00262,RC00397,RC00451,RC00714,RC00746,RC01248
KEGG koko:K05350,ko:K06643,ko:K15283,ko:K15285
KEGG TC2.A.7.9
KEGG ReactionR00026,R02558,R02887,R02985,R03527,R04949,R04998,R10035,R10039,R10040
KEGG Pathwayko00460,ko00500,ko00940,ko01100,ko01110,ko01522,ko01524,ko04068,ko04110,ko04115,ko04120,ko04144,ko04151,ko04218,ko04919,ko05165,ko05169,ko05200,ko05202,ko05203,ko05205,ko05206,ko05214,ko05215,ko05218,ko05219,ko05220,map00460,map00500,map00940,map01100,map01110,map01522,map01524,map04068,map04110,map04115,map04120,map04144,map04151,map04218,map04919,map05165,map05169,map05200,map05202,map05203,map05205,map05206,map05214,map05215,map05218,map05219,map05220
GOsGO:0000003,GO:0003006,GO:0003674,GO:0005215,GO:0005315,GO:0005342,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0006810,GO:0006811,GO:0006820,GO:0006996,GO:0007033,GO:0007275,GO:0008028,GO:0008150,GO:0008152,GO:0008509,GO:0008514,GO:0008643,GO:0009314,GO:0009416,GO:0009507,GO:0009526,GO:0009536,GO:0009553,GO:0009555,GO:0009605,GO:0009607,GO:0009624,GO:0009628,GO:0009642,GO:0009643,GO:0009743,GO:0009744,GO:0009746,GO:0009749,GO:0009790,GO:0009791,GO:0009793,GO:0009941,GO:0009987,GO:0010033,GO:0010109,GO:0010152,GO:0010154,GO:0015075,GO:0015120,GO:0015144,GO:0015152,GO:0015291,GO:0015318,GO:0015605,GO:0015711,GO:0015712,GO:0015713,GO:0015714,GO:0015717,GO:0015718,GO:0015748,GO:0015760,GO:0015849,GO:0015979,GO:0016020,GO:0016043,GO:0019222,GO:0019904,GO:0021700,GO:0022414,GO:0022804,GO:0022857,GO:0031090,GO:0031323,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0034219,GO:0034220,GO:0034284,GO:0034285,GO:0034389,GO:0035436,GO:0042221,GO:0042873,GO:0042879,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0046942,GO:0046943,GO:0048229,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051704,GO:0051707,GO:0055085,GO:0061458,GO:0065007,GO:0071702,GO:0071840,GO:0071917,GO:0080167,GO:0098588,GO:0098656,GO:0098805,GO:1901264,GO:1901505,GO:1901700,GO:1903825,GO:1905039
Evalue1.94e-100
EggNOG OGsKOG1441@1|root,KOG1441@2759|Eukaryota
EC2.3.2.27,3.2.1.21
Descriptioncarbohydrate transport
COG categoryZ
BRITEko00000,ko00001,ko01000,ko02000,ko04121,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5181Ggra5181Gracilaria gracilis GNS1m malegenetig00000069_pilon 692545..693747 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5181.t1.start1Ggra5181.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000069_pilon 692545..692547 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5181.t1.CDS1Ggra5181.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000069_pilon 692545..693747 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5181.t1.exon1Ggra5181.t1.exon1Gracilaria gracilis GNS1m maleexontig00000069_pilon 692545..693747 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5181.t1.stop1Ggra5181.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000069_pilon 693745..693747 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5181.t1Ggra5181.t1Gracilaria gracilis GNS1m malepolypeptidetig00000069_pilon 692545..693747 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5181.t1 ID=Ggra5181.t1|Name=Ggra5181.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=401bp
MIAFVNPVAAAAAAARSRVTARVAPLRVCAAPHRQRAAAATLGRTCFVPR
VAAPSSSPSPSPSLARARGVRMVAGGDDAARASKSAAAFSMPSASTMYVG
LLFLLWYVFNIIFNLMNKTVLNAWSNPWILSTVQLGVGSIMVLLQWALRI
QKRPNLSPKLFKALLLPTVSHLVGHVSTCISFSYVAVSFSHIVKACEPAF
GALGSALVLGEVYSPGVYATLLPIIGGVALSAVTQLQFSWPGFLFAMLSN
VAFASRNIFSKLTMGDFKSDPTLSPQNIYGIMSLLAFLIELPVALAVEGL
PPLPSSHIGRLLAGSGVFYTLYNTVSFMALGKTGVVTHAVGNILKRASVI
VVSILVFRTPVKLFNAVGMAVALAGTFLYSIVKQRFLSKRKAQLQSSKSP
*
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spliced messenger RNA

>Ggra5181.t1 ID=Ggra5181.t1|Name=Ggra5181.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1203bp|location=Sequence derived from alignment at tig00000069_pilon:692545..693747+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
atgatcgccttcgtcaaccccgtcgccgccgccgccgccgccgcGCGCTC
GCGTGTGACGGCGCGCGTCGCGCCGCTGCGCGTATGCGCCGCGCCGCATC
GCCAGCGCGCCGCCGCCGCCACGCTCGGCCGCACTTGCTTCGTGCCGCGc
gtcgccgcgccgtcgtcgtcgccgtcgccgtcgccgtcgcTCGCGCGCGC
ACGCGGCGTGCGCATGGTGGCGGGCGGCGACGATGCGGCACGCGCCTCAA
AGAGCGCCGCCGCCTTCTCAATGCCCAGCGCCAGCACCATGTACGTGGGG
CTGCTCTTCCTGCTGTGGTACGTGTTCAACATCATCTTCAACCTCATGAA
CAAGACCGTGCTCAACGCGTGGTCCAACCCGTGGATCCTGTCCACCGTGC
AGCTGGGCGTGGGCTCCATCATGGTGCTGCTGCAGTGGGCGCTGCGCATA
CAAAAGCGCCCCAACCTGTCGCCCAAGCTGTTCAAGGCGCTGTTGCTGCC
CACCGTCAGTCACCTTGTGGGCCATGTGTCCACCTGCATCTCCTTCAGCT
ACGTCGCCGTCAGCTTCTCGCACATTGTCAAGGCGTGCGAGCCGGCGTTC
GGCGCGCTGGGCAGCGCCCTCGTGCTGGGCGAGGTGTATTCGCCCGGCGT
GTACGCCACGCTGCTGCCCATCATCGGCGGCGTGGCGCTGTCGGCCGTCA
CGCAGCTGCAGTTCTCGTGGCCGGGTTTTCTGTTCGCCATGCTGTCCAAC
GTGGCGTTTGCCAGCAGGAACATCTTCAGCAAGCTCACCATGGGCGACTT
TAAGAGCGACCCCACGCTGTCGCCGCAGAACATCTATGGGATCATGTCGC
TCCTGGCCTTCTTGATCGAGCTGCCCGTGGCGCTGGCTGTGGAGGGCTTG
CCGCCGCTGCCGTCCAGCCATATTGGCCGCTTGCTGGCGGGCTCGGGTGT
GTTTTACACGCTGTATAACACCGTGTCGTTCATGGCGCTGGGCAAGACCG
GCGTGGTCACGCACGCCGTGGGCAACATTTTGAAGCGCGCCAGTGTGATT
GTGGTCAGCATCCTGGTGTTCAGAACGCCCGTCAAGCTGTTCAATGCGGT
GGGCATGGCTGTTGCGCTGGCGGGTACCTTCTTGTACTCCATCGTCAAGC
AGCGCTTCTTGTCCAAGCGAAAGGCGCAGCTGCAGTCGTCCAAGTCGCCA
TGA
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protein sequence of Ggra5181.t1

>Ggra5181.t1 ID=Ggra5181.t1|Name=Ggra5181.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=401bp
MIAFVNPVAAAAAAARSRVTARVAPLRVCAAPHRQRAAAATLGRTCFVPR
VAAPSSSPSPSPSLARARGVRMVAGGDDAARASKSAAAFSMPSASTMYVG
LLFLLWYVFNIIFNLMNKTVLNAWSNPWILSTVQLGVGSIMVLLQWALRI
QKRPNLSPKLFKALLLPTVSHLVGHVSTCISFSYVAVSFSHIVKACEPAF
GALGSALVLGEVYSPGVYATLLPIIGGVALSAVTQLQFSWPGFLFAMLSN
VAFASRNIFSKLTMGDFKSDPTLSPQNIYGIMSLLAFLIELPVALAVEGL
PPLPSSHIGRLLAGSGVFYTLYNTVSFMALGKTGVVTHAVGNILKRASVI
VVSILVFRTPVKLFNAVGMAVALAGTFLYSIVKQRFLSKRKAQLQSSKSP
*
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mRNA from alignment at tig00000069_pilon:692545..693747+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5181.t1 ID=Ggra5181.t1|Name=Ggra5181.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1203bp|location=Sequence derived from alignment at tig00000069_pilon:692545..693747+ (Gracilaria gracilis GNS1m male)
atgatcgccttcgtcaaccccgtcgccgccgccgccgccgccgcGCGCTC
GCGTGTGACGGCGCGCGTCGCGCCGCTGCGCGTATGCGCCGCGCCGCATC
GCCAGCGCGCCGCCGCCGCCACGCTCGGCCGCACTTGCTTCGTGCCGCGc
gtcgccgcgccgtcgtcgtcgccgtcgccgtcgccgtcgcTCGCGCGCGC
ACGCGGCGTGCGCATGGTGGCGGGCGGCGACGATGCGGCACGCGCCTCAA
AGAGCGCCGCCGCCTTCTCAATGCCCAGCGCCAGCACCATGTACGTGGGG
CTGCTCTTCCTGCTGTGGTACGTGTTCAACATCATCTTCAACCTCATGAA
CAAGACCGTGCTCAACGCGTGGTCCAACCCGTGGATCCTGTCCACCGTGC
AGCTGGGCGTGGGCTCCATCATGGTGCTGCTGCAGTGGGCGCTGCGCATA
CAAAAGCGCCCCAACCTGTCGCCCAAGCTGTTCAAGGCGCTGTTGCTGCC
CACCGTCAGTCACCTTGTGGGCCATGTGTCCACCTGCATCTCCTTCAGCT
ACGTCGCCGTCAGCTTCTCGCACATTGTCAAGGCGTGCGAGCCGGCGTTC
GGCGCGCTGGGCAGCGCCCTCGTGCTGGGCGAGGTGTATTCGCCCGGCGT
GTACGCCACGCTGCTGCCCATCATCGGCGGCGTGGCGCTGTCGGCCGTCA
CGCAGCTGCAGTTCTCGTGGCCGGGTTTTCTGTTCGCCATGCTGTCCAAC
GTGGCGTTTGCCAGCAGGAACATCTTCAGCAAGCTCACCATGGGCGACTT
TAAGAGCGACCCCACGCTGTCGCCGCAGAACATCTATGGGATCATGTCGC
TCCTGGCCTTCTTGATCGAGCTGCCCGTGGCGCTGGCTGTGGAGGGCTTG
CCGCCGCTGCCGTCCAGCCATATTGGCCGCTTGCTGGCGGGCTCGGGTGT
GTTTTACACGCTGTATAACACCGTGTCGTTCATGGCGCTGGGCAAGACCG
GCGTGGTCACGCACGCCGTGGGCAACATTTTGAAGCGCGCCAGTGTGATT
GTGGTCAGCATCCTGGTGTTCAGAACGCCCGTCAAGCTGTTCAATGCGGT
GGGCATGGCTGTTGCGCTGGCGGGTACCTTCTTGTACTCCATCGTCAAGC
AGCGCTTCTTGTCCAAGCGAAAGGCGCAGCTGCAGTCGTCCAAGTCGCCA
TGA
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Coding sequence (CDS) from alignment at tig00000069_pilon:692545..693747+

>Ggra5181.t1 ID=Ggra5181.t1|Name=Ggra5181.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1203bp|location=Sequence derived from alignment at tig00000069_pilon:692545..693747+ (Gracilaria gracilis GNS1m male)
atgatcgccttcgtcaaccccgtcgccgccgccgccgccgccgcGCGCTC
GCGTGTGACGGCGCGCGTCGCGCCGCTGCGCGTATGCGCCGCGCCGCATC
GCCAGCGCGCCGCCGCCGCCACGCTCGGCCGCACTTGCTTCGTGCCGCGc
gtcgccgcgccgtcgtcgtcgccgtcgccgtcgccgtcgcTCGCGCGCGC
ACGCGGCGTGCGCATGGTGGCGGGCGGCGACGATGCGGCACGCGCCTCAA
AGAGCGCCGCCGCCTTCTCAATGCCCAGCGCCAGCACCATGTACGTGGGG
CTGCTCTTCCTGCTGTGGTACGTGTTCAACATCATCTTCAACCTCATGAA
CAAGACCGTGCTCAACGCGTGGTCCAACCCGTGGATCCTGTCCACCGTGC
AGCTGGGCGTGGGCTCCATCATGGTGCTGCTGCAGTGGGCGCTGCGCATA
CAAAAGCGCCCCAACCTGTCGCCCAAGCTGTTCAAGGCGCTGTTGCTGCC
CACCGTCAGTCACCTTGTGGGCCATGTGTCCACCTGCATCTCCTTCAGCT
ACGTCGCCGTCAGCTTCTCGCACATTGTCAAGGCGTGCGAGCCGGCGTTC
GGCGCGCTGGGCAGCGCCCTCGTGCTGGGCGAGGTGTATTCGCCCGGCGT
GTACGCCACGCTGCTGCCCATCATCGGCGGCGTGGCGCTGTCGGCCGTCA
CGCAGCTGCAGTTCTCGTGGCCGGGTTTTCTGTTCGCCATGCTGTCCAAC
GTGGCGTTTGCCAGCAGGAACATCTTCAGCAAGCTCACCATGGGCGACTT
TAAGAGCGACCCCACGCTGTCGCCGCAGAACATCTATGGGATCATGTCGC
TCCTGGCCTTCTTGATCGAGCTGCCCGTGGCGCTGGCTGTGGAGGGCTTG
CCGCCGCTGCCGTCCAGCCATATTGGCCGCTTGCTGGCGGGCTCGGGTGT
GTTTTACACGCTGTATAACACCGTGTCGTTCATGGCGCTGGGCAAGACCG
GCGTGGTCACGCACGCCGTGGGCAACATTTTGAAGCGCGCCAGTGTGATT
GTGGTCAGCATCCTGGTGTTCAGAACGCCCGTCAAGCTGTTCAATGCGGT
GGGCATGGCTGTTGCGCTGGCGGGTACCTTCTTGTACTCCATCGTCAAGC
AGCGCTTCTTGTCCAAGCGAAAGGCGCAGCTGCAGTCGTCCAAGTCGCCA
TGA
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