Ggra5090.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5090.t1
Unique NameGgra5090.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length300
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:434634..435533 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog72019.SARC_10449T0
Max annot lvl2759|Eukaryota
Evalue1.21e-18
EggNOG OGs2E99P@1|root,2SFNP@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5090Ggra5090Gracilaria gracilis GNS1m malegenetig00000069_pilon 434634..435533 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5090.t1.stop1Ggra5090.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000069_pilon 434634..434636 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5090.t1.CDS1Ggra5090.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000069_pilon 434634..435533 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5090.t1.exon1Ggra5090.t1.exon1Gracilaria gracilis GNS1m maleexontig00000069_pilon 434634..435533 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5090.t1.start1Ggra5090.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000069_pilon 435531..435533 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5090.t1Ggra5090.t1Gracilaria gracilis GNS1m malepolypeptidetig00000069_pilon 434634..435533 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5090.t1 ID=Ggra5090.t1|Name=Ggra5090.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=300bp
MQNTAVRFMIRTERPKLSMQHIRVDVLLLIACSAVLLLVTVFKYEGIISY
PSAAFTTEQTKIIAPIITETMPDPLHNLSRFQRSMVEKQKHVDYNSIWMG
DFEVNLVLRYMDNVTTYVEWGSGGSTYNFPQFAKRAYSIEHDQTWCSRMA
KAISSRPELKHLRYHCVPVKRGTNGWGRKSAFEEGSYKAFKPYIDHIEKL
GEKKFDVVLIDGRARVDAAIKALSYIGKNSVVIVHDAERIWTWRSYAKMS
TYYDIIDSVGGKTRQGLAVLRRKSKYSTLEGNHAAVQKILDNKYPTIKA*
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spliced messenger RNA

>Ggra5090.t1 ID=Ggra5090.t1|Name=Ggra5090.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=900bp|location=Sequence derived from alignment at tig00000069_pilon:434634..435533- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAAACACCGCCGTCCGCTTTATGATTCGAACGGAACGCCCAAAACT
TTCAATGCAACATATACGCGTCGATGTTCTTCTGCTAATCGCATGCAGTG
CTGTTCTTCTCCTCGTAACAGTGTTCAAGTATGAAGGCATCATAAGTTAC
CCCTCTGCAGCATTTACCACCGAGCAAACCAAGATCATAGCTCCGATCAT
AACAGAGACCATGCCCGACCCTCTCCACAACCTTTCAAGATTTCAACGCT
CAATGGTTGAGAAGCAAAAGCATGTAGATTACAACTCTATCTGGATGGGT
GATTTTGAGGTCAACCTTGTGCTGAGATACATGGACAATGTCACCACCTA
CGTGGAATGGGGCAGTGGTGGAAGCACTTACAACTTTCCTCAGTTTGCAA
AACGTGCCTATTCTATCGAACATGATCAAACATGGTGCTCTCGGATGGCC
AAGGCCATCAGTTCACGACCAGAACTCAAACATCTTCGGTACCACTGCGT
GCCCGTTAAACGCGGCACAAATGGTTGGGGACGGAAGTCCGCCTTTGAAG
AGGGCAGTTACAAAGCCTTTAAACCGTACATTGATCACATTGAAAAGCTT
GGAGAGAAAAAGTTTGATGTTGTTTTGATTGATGGGCGCGCTAGAGTTGA
TGCTGCTATTAAGGCTTTGTCGTACATTGGAAAGAACAGCGTCGTTATTG
TGCATGATGCAGAACGTATTTGGACGTGGAGATCGTATGCGAAGATGTCT
ACGTATTACGATATCATCGATTCCGTGGGCGGCAAAACACGGCAAGGTCT
TGCAGTCCTGCGACGAAAATCAAAGTACTCCACGCTAGAAGGAAATCATG
CTGCTGTACAGAAAATACTAGACAACAAGTATCCGACGATAAAAGCATAG
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protein sequence of Ggra5090.t1

>Ggra5090.t1 ID=Ggra5090.t1|Name=Ggra5090.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=300bp
MQNTAVRFMIRTERPKLSMQHIRVDVLLLIACSAVLLLVTVFKYEGIISY
PSAAFTTEQTKIIAPIITETMPDPLHNLSRFQRSMVEKQKHVDYNSIWMG
DFEVNLVLRYMDNVTTYVEWGSGGSTYNFPQFAKRAYSIEHDQTWCSRMA
KAISSRPELKHLRYHCVPVKRGTNGWGRKSAFEEGSYKAFKPYIDHIEKL
GEKKFDVVLIDGRARVDAAIKALSYIGKNSVVIVHDAERIWTWRSYAKMS
TYYDIIDSVGGKTRQGLAVLRRKSKYSTLEGNHAAVQKILDNKYPTIKA*
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mRNA from alignment at tig00000069_pilon:434634..435533-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5090.t1 ID=Ggra5090.t1|Name=Ggra5090.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=900bp|location=Sequence derived from alignment at tig00000069_pilon:434634..435533- (Gracilaria gracilis GNS1m male)
ATGCAAAACACCGCCGTCCGCTTTATGATTCGAACGGAACGCCCAAAACT
TTCAATGCAACATATACGCGTCGATGTTCTTCTGCTAATCGCATGCAGTG
CTGTTCTTCTCCTCGTAACAGTGTTCAAGTATGAAGGCATCATAAGTTAC
CCCTCTGCAGCATTTACCACCGAGCAAACCAAGATCATAGCTCCGATCAT
AACAGAGACCATGCCCGACCCTCTCCACAACCTTTCAAGATTTCAACGCT
CAATGGTTGAGAAGCAAAAGCATGTAGATTACAACTCTATCTGGATGGGT
GATTTTGAGGTCAACCTTGTGCTGAGATACATGGACAATGTCACCACCTA
CGTGGAATGGGGCAGTGGTGGAAGCACTTACAACTTTCCTCAGTTTGCAA
AACGTGCCTATTCTATCGAACATGATCAAACATGGTGCTCTCGGATGGCC
AAGGCCATCAGTTCACGACCAGAACTCAAACATCTTCGGTACCACTGCGT
GCCCGTTAAACGCGGCACAAATGGTTGGGGACGGAAGTCCGCCTTTGAAG
AGGGCAGTTACAAAGCCTTTAAACCGTACATTGATCACATTGAAAAGCTT
GGAGAGAAAAAGTTTGATGTTGTTTTGATTGATGGGCGCGCTAGAGTTGA
TGCTGCTATTAAGGCTTTGTCGTACATTGGAAAGAACAGCGTCGTTATTG
TGCATGATGCAGAACGTATTTGGACGTGGAGATCGTATGCGAAGATGTCT
ACGTATTACGATATCATCGATTCCGTGGGCGGCAAAACACGGCAAGGTCT
TGCAGTCCTGCGACGAAAATCAAAGTACTCCACGCTAGAAGGAAATCATG
CTGCTGTACAGAAAATACTAGACAACAAGTATCCGACGATAAAAGCATAG
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Coding sequence (CDS) from alignment at tig00000069_pilon:434634..435533-

>Ggra5090.t1 ID=Ggra5090.t1|Name=Ggra5090.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=900bp|location=Sequence derived from alignment at tig00000069_pilon:434634..435533- (Gracilaria gracilis GNS1m male)
ATGCAAAACACCGCCGTCCGCTTTATGATTCGAACGGAACGCCCAAAACT
TTCAATGCAACATATACGCGTCGATGTTCTTCTGCTAATCGCATGCAGTG
CTGTTCTTCTCCTCGTAACAGTGTTCAAGTATGAAGGCATCATAAGTTAC
CCCTCTGCAGCATTTACCACCGAGCAAACCAAGATCATAGCTCCGATCAT
AACAGAGACCATGCCCGACCCTCTCCACAACCTTTCAAGATTTCAACGCT
CAATGGTTGAGAAGCAAAAGCATGTAGATTACAACTCTATCTGGATGGGT
GATTTTGAGGTCAACCTTGTGCTGAGATACATGGACAATGTCACCACCTA
CGTGGAATGGGGCAGTGGTGGAAGCACTTACAACTTTCCTCAGTTTGCAA
AACGTGCCTATTCTATCGAACATGATCAAACATGGTGCTCTCGGATGGCC
AAGGCCATCAGTTCACGACCAGAACTCAAACATCTTCGGTACCACTGCGT
GCCCGTTAAACGCGGCACAAATGGTTGGGGACGGAAGTCCGCCTTTGAAG
AGGGCAGTTACAAAGCCTTTAAACCGTACATTGATCACATTGAAAAGCTT
GGAGAGAAAAAGTTTGATGTTGTTTTGATTGATGGGCGCGCTAGAGTTGA
TGCTGCTATTAAGGCTTTGTCGTACATTGGAAAGAACAGCGTCGTTATTG
TGCATGATGCAGAACGTATTTGGACGTGGAGATCGTATGCGAAGATGTCT
ACGTATTACGATATCATCGATTCCGTGGGCGGCAAAACACGGCAAGGTCT
TGCAGTCCTGCGACGAAAATCAAAGTACTCCACGCTAGAAGGAAATCATG
CTGCTGTACAGAAAATACTAGACAACAAGTATCCGACGATAAAAGCATAG
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