Ggra5155.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5155.t1
Unique NameGgra5155.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length234
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:628270..628971 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog317936.Nos7107_1609
Preferred nameubiC
PFAMsDUF98
Max annot lvl1117|Cyanobacteria
KEGG rclassRC00491,RC02148
KEGG koko:K03181
KEGG ReactionR01302
KEGG Pathwayko00130,ko01100,ko01110,map00130,map01100,map01110
KEGG ModuleM00117
Evalue0.000205
EggNOG OGsCOG3161@1|root,COG3161@2|Bacteria,1G2YI@1117|Cyanobacteria,1HJYN@1161|Nostocales
EC4.1.3.40
DescriptionChorismate lyase
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5155Ggra5155Gracilaria gracilis GNS1m malegenetig00000069_pilon 628270..628971 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5155.t1.stop1Ggra5155.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000069_pilon 628270..628272 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5155.t1.CDS1Ggra5155.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000069_pilon 628270..628971 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5155.t1.exon1Ggra5155.t1.exon1Gracilaria gracilis GNS1m maleexontig00000069_pilon 628270..628971 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5155.t1.start1Ggra5155.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000069_pilon 628969..628971 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5155.t1Ggra5155.t1Gracilaria gracilis GNS1m malepolypeptidetig00000069_pilon 628270..628971 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5155.t1 ID=Ggra5155.t1|Name=Ggra5155.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=234bp
MCTRAAAFARSCATPAPPPPSLRAARCVSGRQLATFAAASLTVDARWRLA
LLSDGHTQPLLSALANAPLRLQVHATGAAAAAPRLPLGERFERERERGGG
GGGGGAVRRVASLQLPDGTPLLVATSLWSPRAYHALVAGRESLALWQLFA
RLRVSCSREVIRVCFGTAASAAPLLRVNAEQRAVSRDVLYRRRGATFLLV
HEVFSPAAARVLGAMPLAPPPSSSSSSSPSSLP*
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spliced messenger RNA

>Ggra5155.t1 ID=Ggra5155.t1|Name=Ggra5155.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=702bp|location=Sequence derived from alignment at tig00000069_pilon:628270..628971- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCACGCGCGCAGCGGCGTTCGCGCGCAGCTGCGCAACGCCGGCGCC
ACCGCCGCCGAGTCTGCGCGCGGCGCGTTGCGTAAGCGGGCGGCAGCTAG
CGACGTTCGCGGCCGCGTCGCTGACCGTCGACGCGCGCTGGCGGCTGGCG
CTGCTGTCGGACGGCCACACGCAGCCGCTGCTATCCGCGCTCGCCAACGC
GCCGCTGCGGCTGCAGGTGCACGCGACGGGCGCGGCGGCCGCCGCGCCGC
GGCTGCCGCTTGGCGAGCGCTTCGAGCGCGAGCGCGAGCGCGGCGGCGGC
GGCGGCGGCGGTGGCGCGGTGCGGCGCGTGGCGTCGCTGCAGTTGCCAGA
CGGCACGCCGCTGCTGGTGGCCACCTCGCTGTGGTCGCCGCGCGCGTACC
ACGCGCTGGTGGCCGGGCGCGAATCGCTCGCGCTGTGGCAGCTGTTTGCG
CGCCTCCGCGTGTCTTGTTCGCGCGAGGTGATTCGCGTCTGCTTCGGCAC
GGCAGCGTCAGCCGCGCCGCTGCTGCGCGTGAACGCGGAGCAGCGCGCGG
TATCGCGCGACGTGCTATACCGCCGCCGCGGCGCCACCTTCCTGCTGGTG
CACGAGGTGTTCTCGCCGGCGGCGGCGCGCGTACTGGGCGCCATGCCGCT
GGCGCCGCCGCCGTCGTCGTCGTCGTCGTCGTCGCCGTCATCTTTACCGT
AA
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protein sequence of Ggra5155.t1

>Ggra5155.t1 ID=Ggra5155.t1|Name=Ggra5155.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=234bp
MCTRAAAFARSCATPAPPPPSLRAARCVSGRQLATFAAASLTVDARWRLA
LLSDGHTQPLLSALANAPLRLQVHATGAAAAAPRLPLGERFERERERGGG
GGGGGAVRRVASLQLPDGTPLLVATSLWSPRAYHALVAGRESLALWQLFA
RLRVSCSREVIRVCFGTAASAAPLLRVNAEQRAVSRDVLYRRRGATFLLV
HEVFSPAAARVLGAMPLAPPPSSSSSSSPSSLP*
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mRNA from alignment at tig00000069_pilon:628270..628971-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5155.t1 ID=Ggra5155.t1|Name=Ggra5155.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=702bp|location=Sequence derived from alignment at tig00000069_pilon:628270..628971- (Gracilaria gracilis GNS1m male)
ATGTGCACGCGCGCAGCGGCGTTCGCGCGCAGCTGCGCAACGCCGGCGCC
ACCGCCGCCGAGTCTGCGCGCGGCGCGTTGCGTAAGCGGGCGGCAGCTAG
CGACGTTCGCGGCCGCGTCGCTGACCGTCGACGCGCGCTGGCGGCTGGCG
CTGCTGTCGGACGGCCACACGCAGCCGCTGCTATCCGCGCTCGCCAACGC
GCCGCTGCGGCTGCAGGTGCACGCGACGGGCGCGGCGGCCGCCGCGCCGC
GGCTGCCGCTTGGCGAGCGCTTCGAGCGCGAGCGCGAGCGCGGCGGCGGC
GGCGGCGGCGGTGGCGCGGTGCGGCGCGTGGCGTCGCTGCAGTTGCCAGA
CGGCACGCCGCTGCTGGTGGCCACCTCGCTGTGGTCGCCGCGCGCGTACC
ACGCGCTGGTGGCCGGGCGCGAATCGCTCGCGCTGTGGCAGCTGTTTGCG
CGCCTCCGCGTGTCTTGTTCGCGCGAGGTGATTCGCGTCTGCTTCGGCAC
GGCAGCGTCAGCCGCGCCGCTGCTGCGCGTGAACGCGGAGCAGCGCGCGG
TATCGCGCGACGTGCTATACCGCCGCCGCGGCGCCACCTTCCTGCTGGTG
CACGAGGTGTTCTCGCCGGCGGCGGCGCGCGTACTGGGCGCCATGCCGCT
GGCGCCGCCGCCGTCGTCGTCGTCGTCGTCGTCGCCGTCATCTTTACCGT
AA
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Coding sequence (CDS) from alignment at tig00000069_pilon:628270..628971-

>Ggra5155.t1 ID=Ggra5155.t1|Name=Ggra5155.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=702bp|location=Sequence derived from alignment at tig00000069_pilon:628270..628971- (Gracilaria gracilis GNS1m male)
ATGTGCACGCGCGCAGCGGCGTTCGCGCGCAGCTGCGCAACGCCGGCGCC
ACCGCCGCCGAGTCTGCGCGCGGCGCGTTGCGTAAGCGGGCGGCAGCTAG
CGACGTTCGCGGCCGCGTCGCTGACCGTCGACGCGCGCTGGCGGCTGGCG
CTGCTGTCGGACGGCCACACGCAGCCGCTGCTATCCGCGCTCGCCAACGC
GCCGCTGCGGCTGCAGGTGCACGCGACGGGCGCGGCGGCCGCCGCGCCGC
GGCTGCCGCTTGGCGAGCGCTTCGAGCGCGAGCGCGAGCGCGGCGGCGGC
GGCGGCGGCGGTGGCGCGGTGCGGCGCGTGGCGTCGCTGCAGTTGCCAGA
CGGCACGCCGCTGCTGGTGGCCACCTCGCTGTGGTCGCCGCGCGCGTACC
ACGCGCTGGTGGCCGGGCGCGAATCGCTCGCGCTGTGGCAGCTGTTTGCG
CGCCTCCGCGTGTCTTGTTCGCGCGAGGTGATTCGCGTCTGCTTCGGCAC
GGCAGCGTCAGCCGCGCCGCTGCTGCGCGTGAACGCGGAGCAGCGCGCGG
TATCGCGCGACGTGCTATACCGCCGCCGCGGCGCCACCTTCCTGCTGGTG
CACGAGGTGTTCTCGCCGGCGGCGGCGCGCGTACTGGGCGCCATGCCGCT
GGCGCCGCCGCCGTCGTCGTCGTCGTCGTCGTCGCCGTCATCTTTACCGT
AA
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