Ggra5139.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5139.t1
Unique NameGgra5139.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length402
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:574416..575621 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX45333
Preferred nameAGXT
PFAMsAminotran_5
Max annot lvl2759|Eukaryota
KEGG rclassRC00006,RC00008,RC00018
KEGG koko:K00830
KEGG ReactionR00369,R00372,R00585,R00588
KEGG Pathwayko00250,ko00260,ko00630,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko04146,map00250,map00260,map00630,map00680,map01100,map01110,map01120,map01130,map01200,map04146
KEGG ModuleM00346,M00532
GOsGO:0000096,GO:0000098,GO:0001505,GO:0003674,GO:0003824,GO:0004760,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005777,GO:0005782,GO:0005829,GO:0006081,GO:0006082,GO:0006090,GO:0006520,GO:0006522,GO:0006524,GO:0006534,GO:0006544,GO:0006545,GO:0006605,GO:0006625,GO:0006790,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006835,GO:0006886,GO:0006996,GO:0007031,GO:0007154,GO:0007165,GO:0007166,GO:0007219,GO:0008104,GO:0008144,GO:0008150,GO:0008152,GO:0008453,GO:0008483,GO:0008652,GO:0009056,GO:0009058,GO:0009063,GO:0009069,GO:0009070,GO:0009071,GO:0009078,GO:0009080,GO:0009093,GO:0009436,GO:0009719,GO:0009725,GO:0009987,GO:0010033,GO:0010243,GO:0014070,GO:0014074,GO:0015031,GO:0015711,GO:0015833,GO:0015849,GO:0016043,GO:0016053,GO:0016054,GO:0016597,GO:0016740,GO:0016769,GO:0017144,GO:0019265,GO:0019448,GO:0019532,GO:0019752,GO:0019842,GO:0023052,GO:0030170,GO:0031406,GO:0031907,GO:0031960,GO:0031974,GO:0032787,GO:0033036,GO:0033365,GO:0033993,GO:0034613,GO:0034641,GO:0036094,GO:0042133,GO:0042136,GO:0042221,GO:0042579,GO:0042802,GO:0042803,GO:0042851,GO:0042853,GO:0042866,GO:0042886,GO:0043167,GO:0043168,GO:0043177,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043574,GO:0043621,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044273,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046185,GO:0046394,GO:0046395,GO:0046439,GO:0046487,GO:0046683,GO:0046717,GO:0046724,GO:0046903,GO:0046907,GO:0046942,GO:0046983,GO:0048037,GO:0048545,GO:0050662,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051384,GO:0051591,GO:0051641,GO:0051649,GO:0051716,GO:0065007,GO:0065008,GO:0070013,GO:0070279,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072329,GO:0072330,GO:0072594,GO:0072662,GO:0072663,GO:0097159,GO:1901363,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901606,GO:1901607,GO:1901698,GO:1901700
Evalue2.06e-196
EggNOG OGsCOG0075@1|root,KOG2862@2759|Eukaryota
EC2.6.1.44,2.6.1.45,2.6.1.51
Descriptionserine-pyruvate transaminase activity
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000,ko01007
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5139Ggra5139Gracilaria gracilis GNS1m malegenetig00000069_pilon 574416..575621 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5139.t1.stop1Ggra5139.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000069_pilon 574416..574418 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5139.t1.CDS1Ggra5139.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000069_pilon 574416..575621 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5139.t1.exon1Ggra5139.t1.exon1Gracilaria gracilis GNS1m maleexontig00000069_pilon 574416..575621 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5139.t1.start1Ggra5139.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000069_pilon 575619..575621 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5139.t1Ggra5139.t1Gracilaria gracilis GNS1m malepolypeptidetig00000069_pilon 574416..575621 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5139.t1 ID=Ggra5139.t1|Name=Ggra5139.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=402bp
MGSTEGLTGPLVDYECTAIAAAPSVGQLNPPHRLLCGPGPGNAHPRVHAA
MSLPEIGHLDPAFISMMEDIKSLLRYTWQTKNEFTIPVSGTGSAAMEACM
ANLVSAGDKVLIGCNGYFGLRLADMASRYGGEVVKISRPWGTVFTFDEIK
AAIEEHKPAIVGLVHAETSTGAAQPLEGVGDLCHDNGALLVADCVTSISG
VPCHLDKWGVDAAYAGTQKCLSCPPGVAPLSFSKRAMDKLMAREDKVKNW
YLDMKMVASYLVGGKGASRSYHHTAPISMCYAIREALTIVAEEGLQTRWA
RHREVAEAFWAGLEEIGLECLVDKENRLPSLTTVKVPEGVDSKAVTKHFL
EKYQIEIGNGLGELAGKVWRVGLMGYNSRMDNVAVLLACFKDALKLQGFG
A*
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spliced messenger RNA

>Ggra5139.t1 ID=Ggra5139.t1|Name=Ggra5139.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1206bp|location=Sequence derived from alignment at tig00000069_pilon:574416..575621- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTTCCACAGAAGGTCTGACCGGTCCGCTCGTTGACTACGAATGCAC
CGCCATCGCGGCTGCGCCCAGTGTTGGCCAGCTCAACCCGCCGCACCGCC
TGCTGTGCGGCCCGGGTCCCGGCAATGCTCACCCGCGCGTGCACGCCGCC
ATGTCTTTGCCGGAGATCGGACATCTTGACCCGGCCTTCATCTCTATGAT
GGAGGACATCAAGTCCCTGCTTCGCTACACCTGGCAGACCAAAAACGAGT
TTACCATCCCCGTCTCCGGCACCGGTTCTGCTGCAATGGAGGCCTGTATG
GCTAACCTCGTTTCCGCTGGCGACAAGGTTCTCATCGGCTGCAACGGCTA
CTTTGGTCTGCGTCTCGCTGACATGGCCTCTCGCTATGGTGGCGAGGTTG
TCAAGATAAGCAGGCCGTGGGGAACTGTTTTCACCTTCGACGAGATCAAG
GCTGCCATCGAGGAGCACAAGCCCGCCATCGTGGGACTCGTACATGCGGA
GACCTCCACTGGTGCCGCGCAGCCTCTGGAAGGCGTCGGTGACCTATGCC
ATGACAACGGTGCGTTGCTCGTTGCTGACTGCGTCACATCCATCTCTGGC
GTTCCGTGCCATCTGGACAAGTGGGGAGTTGATGCCGCGTATGCTGGCAC
GCAGAAGTGCCTCAGCTGCCCGCCCGGTGTTGCCCCTCTGTCCTTCTCCA
AGCGTGCAATGGACAAGCTCATGGCCCGTGAAGATAAGGTCAAGAACTGG
TATCTGGACATGAAGATGGTTGCCAGCTATCTCGTTGGTGGTAAGGGTGC
CTCCCGTTCGTATCATCATACCGCTCCCATCTCGATGTGCTACGCCATTC
GTGAGGCGTTGACGATTGTGGCGGAGGAAGGTCTGCAAACACGCTGGGCT
CGCCACCGTGAGGTTGCTGAGGCGTTCTGGGCTGGCTTGGAGGAGATTGG
ACTGGAATGTCTGGTTGACAAGGAGAATCGGTTGCCGTCGTTGACTACCG
TGAAGGTACCCGAGGGTGTGGACTCAAAGGCCGTCACAAAGCACTTCCTC
GAAAAGTACCAAATCGAGATTGGAAACGGACTCGGCGAATTGGCTGGCAA
GGTGTGGAGAGTCGGACTGATGGGCTACAACTCTCGCATGGACAATGTAG
CAGTGCTTCTGGCGTGCTTTAAGGACGCATTGAAGCTGCAAGGTTTTGGT
GCATAA
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protein sequence of Ggra5139.t1

>Ggra5139.t1 ID=Ggra5139.t1|Name=Ggra5139.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=402bp
MGSTEGLTGPLVDYECTAIAAAPSVGQLNPPHRLLCGPGPGNAHPRVHAA
MSLPEIGHLDPAFISMMEDIKSLLRYTWQTKNEFTIPVSGTGSAAMEACM
ANLVSAGDKVLIGCNGYFGLRLADMASRYGGEVVKISRPWGTVFTFDEIK
AAIEEHKPAIVGLVHAETSTGAAQPLEGVGDLCHDNGALLVADCVTSISG
VPCHLDKWGVDAAYAGTQKCLSCPPGVAPLSFSKRAMDKLMAREDKVKNW
YLDMKMVASYLVGGKGASRSYHHTAPISMCYAIREALTIVAEEGLQTRWA
RHREVAEAFWAGLEEIGLECLVDKENRLPSLTTVKVPEGVDSKAVTKHFL
EKYQIEIGNGLGELAGKVWRVGLMGYNSRMDNVAVLLACFKDALKLQGFG
A*
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mRNA from alignment at tig00000069_pilon:574416..575621-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5139.t1 ID=Ggra5139.t1|Name=Ggra5139.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1206bp|location=Sequence derived from alignment at tig00000069_pilon:574416..575621- (Gracilaria gracilis GNS1m male)
ATGGGTTCCACAGAAGGTCTGACCGGTCCGCTCGTTGACTACGAATGCAC
CGCCATCGCGGCTGCGCCCAGTGTTGGCCAGCTCAACCCGCCGCACCGCC
TGCTGTGCGGCCCGGGTCCCGGCAATGCTCACCCGCGCGTGCACGCCGCC
ATGTCTTTGCCGGAGATCGGACATCTTGACCCGGCCTTCATCTCTATGAT
GGAGGACATCAAGTCCCTGCTTCGCTACACCTGGCAGACCAAAAACGAGT
TTACCATCCCCGTCTCCGGCACCGGTTCTGCTGCAATGGAGGCCTGTATG
GCTAACCTCGTTTCCGCTGGCGACAAGGTTCTCATCGGCTGCAACGGCTA
CTTTGGTCTGCGTCTCGCTGACATGGCCTCTCGCTATGGTGGCGAGGTTG
TCAAGATAAGCAGGCCGTGGGGAACTGTTTTCACCTTCGACGAGATCAAG
GCTGCCATCGAGGAGCACAAGCCCGCCATCGTGGGACTCGTACATGCGGA
GACCTCCACTGGTGCCGCGCAGCCTCTGGAAGGCGTCGGTGACCTATGCC
ATGACAACGGTGCGTTGCTCGTTGCTGACTGCGTCACATCCATCTCTGGC
GTTCCGTGCCATCTGGACAAGTGGGGAGTTGATGCCGCGTATGCTGGCAC
GCAGAAGTGCCTCAGCTGCCCGCCCGGTGTTGCCCCTCTGTCCTTCTCCA
AGCGTGCAATGGACAAGCTCATGGCCCGTGAAGATAAGGTCAAGAACTGG
TATCTGGACATGAAGATGGTTGCCAGCTATCTCGTTGGTGGTAAGGGTGC
CTCCCGTTCGTATCATCATACCGCTCCCATCTCGATGTGCTACGCCATTC
GTGAGGCGTTGACGATTGTGGCGGAGGAAGGTCTGCAAACACGCTGGGCT
CGCCACCGTGAGGTTGCTGAGGCGTTCTGGGCTGGCTTGGAGGAGATTGG
ACTGGAATGTCTGGTTGACAAGGAGAATCGGTTGCCGTCGTTGACTACCG
TGAAGGTACCCGAGGGTGTGGACTCAAAGGCCGTCACAAAGCACTTCCTC
GAAAAGTACCAAATCGAGATTGGAAACGGACTCGGCGAATTGGCTGGCAA
GGTGTGGAGAGTCGGACTGATGGGCTACAACTCTCGCATGGACAATGTAG
CAGTGCTTCTGGCGTGCTTTAAGGACGCATTGAAGCTGCAAGGTTTTGGT
GCATAA
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Coding sequence (CDS) from alignment at tig00000069_pilon:574416..575621-

>Ggra5139.t1 ID=Ggra5139.t1|Name=Ggra5139.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1206bp|location=Sequence derived from alignment at tig00000069_pilon:574416..575621- (Gracilaria gracilis GNS1m male)
ATGGGTTCCACAGAAGGTCTGACCGGTCCGCTCGTTGACTACGAATGCAC
CGCCATCGCGGCTGCGCCCAGTGTTGGCCAGCTCAACCCGCCGCACCGCC
TGCTGTGCGGCCCGGGTCCCGGCAATGCTCACCCGCGCGTGCACGCCGCC
ATGTCTTTGCCGGAGATCGGACATCTTGACCCGGCCTTCATCTCTATGAT
GGAGGACATCAAGTCCCTGCTTCGCTACACCTGGCAGACCAAAAACGAGT
TTACCATCCCCGTCTCCGGCACCGGTTCTGCTGCAATGGAGGCCTGTATG
GCTAACCTCGTTTCCGCTGGCGACAAGGTTCTCATCGGCTGCAACGGCTA
CTTTGGTCTGCGTCTCGCTGACATGGCCTCTCGCTATGGTGGCGAGGTTG
TCAAGATAAGCAGGCCGTGGGGAACTGTTTTCACCTTCGACGAGATCAAG
GCTGCCATCGAGGAGCACAAGCCCGCCATCGTGGGACTCGTACATGCGGA
GACCTCCACTGGTGCCGCGCAGCCTCTGGAAGGCGTCGGTGACCTATGCC
ATGACAACGGTGCGTTGCTCGTTGCTGACTGCGTCACATCCATCTCTGGC
GTTCCGTGCCATCTGGACAAGTGGGGAGTTGATGCCGCGTATGCTGGCAC
GCAGAAGTGCCTCAGCTGCCCGCCCGGTGTTGCCCCTCTGTCCTTCTCCA
AGCGTGCAATGGACAAGCTCATGGCCCGTGAAGATAAGGTCAAGAACTGG
TATCTGGACATGAAGATGGTTGCCAGCTATCTCGTTGGTGGTAAGGGTGC
CTCCCGTTCGTATCATCATACCGCTCCCATCTCGATGTGCTACGCCATTC
GTGAGGCGTTGACGATTGTGGCGGAGGAAGGTCTGCAAACACGCTGGGCT
CGCCACCGTGAGGTTGCTGAGGCGTTCTGGGCTGGCTTGGAGGAGATTGG
ACTGGAATGTCTGGTTGACAAGGAGAATCGGTTGCCGTCGTTGACTACCG
TGAAGGTACCCGAGGGTGTGGACTCAAAGGCCGTCACAAAGCACTTCCTC
GAAAAGTACCAAATCGAGATTGGAAACGGACTCGGCGAATTGGCTGGCAA
GGTGTGGAGAGTCGGACTGATGGGCTACAACTCTCGCATGGACAATGTAG
CAGTGCTTCTGGCGTGCTTTAAGGACGCATTGAAGCTGCAAGGTTTTGGT
GCATAA
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