Ggra5063.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra5063.t1
Unique NameGgra5063.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length297
Homology
BLAST of Ggra5063.t1 vs. uniprot
Match: A0A2V3J6Q7 (DNA-directed RNA polymerase III subunit RPC6 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6Q7_9FLOR)

HSP 1 Score: 511 bits (1316), Expect = 8.260e-182
Identity = 247/296 (83.45%), Postives = 270/296 (91.22%), Query Frame = 0
Query:    1 MPDPALRALQTMILRICQSSPDGLTDAEIVQHLDKNVKPKHRLDTYNELLRNGRLKLLKKSVGEGAQKKDVVVYQWVSLKDAEKFRGLDAAERMVYDMIERSGQNGVTKRDMKFRTNIQNPSELKQIVERLIARGLVKEIKSVQGTNKKVYIASDVEPSTAHTGGPWYNDEQEFDTVFIDTIYAQVLGYMFSMEYVSVDSVTEYVADLNISNEALSKSDIQQLMMTMLYDSVIEECSGRNDGGEYFRIVTNTPAVNHLSSIPCGSCPVFHDCSPDGVISPKTCVYMKEWLQQAADW 296
            MPDP LRALQT ILRICQ+ P+GLTD EIVQ LD +VKPKHRLD+YNELLR GRLKLLKK+VGEG  KKDVVVYQWVSLKDAEKFRGLDA ERMVYDMIERSGQNGVTKRDMKFRTNIQN SELKQIVERLIARGLVKEIKSVQG NKKVYIAS+VEPS AHTGGPWYND++EFDT FI+TIYA +L YM +ME+V+++SVT+YVADL ISNE L+KSDI+QLMMTMLYDSVIEEC GR DGG+Y+R  T+TP VNHLSS+PCGSCPVFHDCSPDGVISPKTCVYMKEWL+Q  DW
Sbjct:    1 MPDPLLRALQTTILRICQTCPEGLTDGEIVQRLDTDVKPKHRLDSYNELLRTGRLKLLKKTVGEGPTKKDVVVYQWVSLKDAEKFRGLDATERMVYDMIERSGQNGVTKRDMKFRTNIQNTSELKQIVERLIARGLVKEIKSVQGANKKVYIASEVEPSAAHTGGPWYNDDKEFDTEFIETIYAHILSYMGTMEFVTIESVTDYVADLKISNEDLTKSDIRQLMMTMLYDSVIEECEGRKDGGDYYRRATSTPGVNHLSSVPCGSCPVFHDCSPDGVISPKTCVYMKEWLEQTTDW 296          
BLAST of Ggra5063.t1 vs. uniprot
Match: R7QCX5 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QCX5_CHOCR)

HSP 1 Score: 363 bits (931), Expect = 1.450e-123
Identity = 171/273 (62.64%), Postives = 214/273 (78.39%), Query Frame = 0
Query:   24 LTDAEIVQHLDKNVKPKHRLDTYNELLRNGRLKLLKKSVGEGAQKKDVVVYQWVSLKDAEKFRGLDAAERMVYDMIERSGQNGVTKRDMKFRTNIQNPSELKQIVERLIARGLVKEIKSVQGTNKKVYIASDVEPSTAHTGGPWYNDEQEFDTVFIDTIYAQVLGYMFSMEYVSVDSVTEYVADLNISNEALSKSDIQQLMMTMLYDSVIEECSGRNDGGEYFRIVTNTPAVNHLSSIPCGSCPVFHDCSPDGVISPKTCVYMKEWLQQAADW 296
            +TD E+   L  + K K R+  YN+LL  GR++L  +  G G  +K  V+YQWVS +DAEKF+GLDA++RMV D++ + GQNG TK++MKFRTNIQ+ +ELKQI+ERLI+R L+KEIKSVQGTNK++YI + +EPST HTGGPWYND+QEFDTVFI+ IY QVL ++    YV+VD VT YVA++ +SNE LS SDI+ LM TMLYD+VIE C G+ DG EYFR V  TPAVNHL+SIPCGSCPVFHDC P GVISP+TCVYM +WL+   DW
Sbjct:    1 MTDKEVTAKLHFDTKAKIRIAAYNKLLAKGRIRLAARVTGTGENRKQQVLYQWVSAEDAEKFKGLDASDRMVLDLVVKGGQNGATKKEMKFRTNIQSNTELKQILERLISRNLIKEIKSVQGTNKRIYIKAGLEPSTLHTGGPWYNDDQEFDTVFIEAIYEQVLAFIKKTNYVTVDQVTSYVAEIKLSNEELSHSDIKSLMNTMLYDTVIELCEGKGDGHEYFRHVQPTPAVNHLASIPCGSCPVFHDCVPGGVISPQTCVYMGDWLKSVTDW 273          
BLAST of Ggra5063.t1 vs. uniprot
Match: E1Z933 (DNA-directed RNA polymerase III subunit RPC6 n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z933_CHLVA)

HSP 1 Score: 177 bits (450), Expect = 9.930e-51
Identity = 96/285 (33.68%), Postives = 164/285 (57.54%), Query Frame = 0
Query:    7 RALQTMILRICQSSPDGLTDAEIVQHLDKNVKPKHRLDTYNELLRNGRLKLLKKSVGEGAQKKDVVVYQWVSLKDAEKFRGLDAAERMVYDMIERSGQNGVTKRDMKFRTNIQNPSELKQIVERLIARGLVKEIKSVQGTNKKVYIASDVEPSTAHTGGPWYNDEQEFDTVFIDTIYAQVLGYMFSMEYVSVDSVTEYVADLNISNEALSKSDIQQLMMTMLYDSVIEECSGRNDGGEYFRI-VTNTPAVNHLSSIPCGSCPVFHDCSPDGVISPKTCVYMKEWL 290
            R ++ +IL +C+  P+G+ D  +   L  +V    R    N LL + +L++L       +      +Y+  ++ DA +F+GL A + +VY  I+ +G  G+  RDMK RTN+Q P ++ +I++ L  R LVK IKSVQ  ++KVY+  ++EP+   TGGPWY  +  FD+ FI  +    + Y+ +    ++  +  ++ +  IS +AL + D+++++ T+  D  IE   G  DG  ++R+ + + P     +SIPCG CPVF++C   G ISP+TC+Y  +WL
Sbjct:    3 RKVEELILTVCRKHPEGVQDTALEAELP-SVAVNDRAVAINSLLASLKLQILVNPADPSSH-----IYKASAVGDATRFKGLTAEDMLVYQCIQGAGNMGIWTRDMKQRTNLQQP-KINKILKTLEERCLVKSIKSVQNASRKVYMLYELEPAKELTGGPWYGPDA-FDSEFITVLQEATMSYINTKGDATLADIVRFIKETGISKQALQEDDVERIINTLECDGKIEGVEGDEDGLPHYRLPLMSIPEATPFTSIPCGVCPVFNECVEGGKISPQTCIYFDQWL 279          
BLAST of Ggra5063.t1 vs. uniprot
Match: A0A2P6V1J4 (DNA-directed RNA polymerase III subunit RPC6 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V1J4_9CHLO)

HSP 1 Score: 177 bits (449), Expect = 1.570e-50
Identity = 98/287 (34.15%), Postives = 162/287 (56.45%), Query Frame = 0
Query:    7 RALQTMILRICQSSPDGLTDAEIVQHLDKNVKPKHRLDTYNELLRNGRLKLLKKSVGEGAQKKDVVVYQWVSLKDAEKFRGLDAAERMVYDMIERSGQNGVTKRDMKFRTNIQNPSELKQIVERLIARGLVKEIKSVQGTNKKVYIASDVEPSTAHTGGPWYNDEQEFDTVFIDTIYAQVLGYMFSMEYVSVDSVTEYVADLNISNEALSKSDIQQLMMTMLYDSVIEECSGRNDGGEYFRIVT-NTPAVNHLSSIPCGSCPVFHDCSPDGVISPKTCVYMKEWLQQ 292
            R ++ M+L +C+  P+G+ D  +   L  +V    R    N LL + +L++L       +      +Y+  +  D  +F+GL A + +VY  I+ +G  G+  RDMK RTN+Q P   K I++ L  R LVK +KSVQ  ++KVY+  ++EP+   TGGPW+  +  FD+ F+  +    L Y+ S    S+  +  ++ +  IS +AL + D+++++ T+ YD  IE+    +DG  ++R++    P    L+SIPCG CPVF +C   G ISP TC Y ++WL+Q
Sbjct:    3 RKVEEMVLAVCRKHPEGVADTVLESELP-DVSVNDRALAINSLLSSMKLQILVNPADPSSH-----IYKASTTGDTARFKGLTAEDMLVYQCIQAAGNIGIWTRDMKQRTNLQQPKVTK-ILKALEERLLVKSVKSVQNASRKVYMLYELEPAKELTGGPWFGPDA-FDSEFVAVLQETTLSYIKSKGQPSLADIVRFIKETGISKQALQEDDVERIINTLEYDGKIEQIE-EDDGDRHYRMMLMRIPESTPLTSIPCGVCPVFSECVEGGKISPATCTYYQDWLEQ 280          
BLAST of Ggra5063.t1 vs. uniprot
Match: A0A8J4YZ80 (DNA-directed RNA polymerase III subunit RPC6 n=2 Tax=Nymphon striatum TaxID=424472 RepID=A0A8J4YZ80_9CHEL)

HSP 1 Score: 178 bits (452), Expect = 6.970e-50
Identity = 105/300 (35.00%), Postives = 161/300 (53.67%), Query Frame = 0
Query:   13 ILRICQSSPDGLTDAEIVQHLDKNVKPKHRLDTYNELLRNGRLKLLKKSVGEGAQKKDVVVYQWVSLKDAEKFRGLDAAERMVYDMIERSGQNGVTKRDMKFRTNIQNPSELKQIVERLIARGLVKEIKSVQGTNKKVYIASDVEPSTAHTGGPWYNDEQEFDTVFIDTIYAQVLGYMF-----------------SMEYVSVDSVTEYVADLNISNEALSKSDIQQLMMTMLYD-----SVIEECSGRNDGGEYFRIVTNTPAVNHLSSIPCGSCPVFHDCSPDGVISPKTCVYMKEWL 290
            IL +C+S+ DG+TDA +   L  NV  + R+   N LL  G+L LL        QK   ++Y+  S        G D  E++ Y +IE +   G+  RD++ + NI   +  ++IV+  +++ L+KEIK V    KK Y+  D++P  + TGG WY+D QEF+  FID +  Q   Y+                  +  + S+  V +Y+AD  IS   LS+ DI++++ +++YD     S++    G ++  + FR+V        L  IPCG CPVF DC P+GVISP TCVYMK+WL
Sbjct:   92 ILEVCKSNADGITDANLQGELP-NVDAQQRVAAINSLLNAGKLDLL--------QKNKQLIYKLKSPSTVRALDGSDHDEKLAYQVIEEANNKGIWIRDLRIKCNIPL-NRAQKIVKNFLSKKLIKEIKCVNAPRKKYYMLYDIKPHQSVTGGIWYSD-QEFEYEFIDILNQQCFRYLKQRRDNVKLDKSDPVSQKNSSFASLPEVCKYIADTGISKVTLSEEDIEEILNSLIYDRKVEKSIVPSTDGSSENIKLFRVVEPMLPTAGLMRIPCGVCPVFSDCQPNGVISPTTCVYMKDWL 380          
BLAST of Ggra5063.t1 vs. uniprot
Match: A0A1Y1IK16 (DNA-directed RNA polymerase III subunit RPC6 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IK16_KLENI)

HSP 1 Score: 174 bits (441), Expect = 2.820e-49
Identity = 103/295 (34.92%), Postives = 160/295 (54.24%), Query Frame = 0
Query:    2 PDPALRALQTMILRICQSSPDGLTDAEIVQHLDKNVKPKHRLDTYNELLRNGRLKLLKKSVGEGAQKKDVVVYQWVSLKDAEKFRGLDAAERMVYDMIERSGQNGVTKRDMKFRTNIQNPSELKQIVERLIARGLVKEIKSVQGTNKKVYIASDVEPSTAHTGGPWYNDEQEFDTVFIDTIYAQVLGYMFSMEYVSVDSVTEYVADLNISNEALSKSDIQQLMMTMLYDSVIEECSGRN-----DGGEYFRIVTNTPAVNHLSSIPCGSCPVFHDCSPDGVISPKTCVYMKEWLQ 291
            PD A+  L+  I  +CQ S  G+T   +   L  ++  +      N LL   +L++  ++          + Y+ V+ +D  +FRGL + E +VY +I+ S   G+  RD+K R+N+Q P ++ +I++ L  R L+K +KSV   N+KVY+  ++EPS   TGG WY  EQEFD  FI  +   V  ++ +   V+++ +  +V     +   L   D QQ+  T++YD  +EE S  +     D   Y     + P  N  +SIPCG CPV H+CS DG+ISP TCVY +EWLQ
Sbjct:    6 PDSAVFRLEEAIANLCQESDGGVTQKMLQDELP-DIPLEELGSALNVLLSRHQLQMYTQA--------STLYYKPVNQEDRVRFRGLGSEEMLVYQIIQASQNMGIWTRDLKLRSNLQQP-QITKIIKTLEGRRLIKAVKSVASKNRKVYMLYEIEPSREITGGAWYT-EQEFDAEFIGVLREAVKKFVENQGKVTLEEIAAFVKSSGATKVDLRLEDYQQVANTLVYDGEVEEISEFDPDEDADTTFYRMSPMSVPETNAFTSIPCGVCPVLHECSDDGLISPATCVYYQEWLQ 289          
BLAST of Ggra5063.t1 vs. uniprot
Match: DNA-directed RNA polymerase III subunit RPC6-like n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF4BA7E (DNA-directed RNA polymerase III subunit RPC6-like n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF4BA7E)

HSP 1 Score: 173 bits (438), Expect = 1.510e-48
Identity = 101/307 (32.90%), Postives = 170/307 (55.37%), Query Frame = 0
Query:    9 LQTMILRICQSSPDGLTDAEIVQHLDKNVKPKHRLDTYNELLRNGRLKLLKKSVGEGAQKKDVVVYQWVSLKDAEKFRGLDAAERMVYDMIERSGQNGVTKRDMKFRTNIQNPSELKQIVERLIARGLVKEIKSVQGTNKKVYIASDVEPSTAHTGGPWYNDEQEFDTVFIDTIYAQVLGYMF-----------------SMEYVSVDSVTEYVADLNISNEALSKSDIQQLMMTMLYDS------VIEECSGRNDGGEYFRIVTNTPAVNHLSSIPCGSCPVFHDCSPDGVISPKTCVYMKEWLQQ 292
            L+  ++++C+ +P G+TD  I Q L  N+ P+ R+   N LL  GR++LLK     GAQ    ++Y++   + A K +G D  E++VY +IE +G  G+  RD++F++NIQ  ++L +I++ L ++ L+K +KSV  + KKVY+  ++EP    TGG WY+D Q+F++ F++ +  Q   ++                  +  Y S   V++Y++ L IS   LS+ DI+ ++ T+++D       V +  S   +  + FR +        L  +PCG CPV   C   G ISP  CVYMK+WL +
Sbjct:   18 LEERVVQLCKENPKGITDQLISQDLP-NIPPQQRVTAINRLLSMGRIELLK----SGAQ----LLYRYKDAQAAVKTKGFDLQEKLVYQIIEEAGNKGIWIRDIRFKSNIQM-TQLNKILKNLESKKLIKAVKSVAASKKKVYMLFNLEPDITVTGGAWYSD-QDFESEFVEVLNQQCYKFLQQKVTLAEKMNVDPLAKRNASYSSSQDVSKYISQLGISKVELSEGDIETILNTLVFDGKAEMTLVADSGSSSTEQRKLFRALVPLMPSTGLMRVPCGVCPVSDRCRDGGPISPSKCVYMKDWLSE 313          
BLAST of Ggra5063.t1 vs. uniprot
Match: A0A8J1U5W6 (Ofus.G091195 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1U5W6_OWEFU)

HSP 1 Score: 172 bits (435), Expect = 3.590e-48
Identity = 98/301 (32.56%), Postives = 166/301 (55.15%), Query Frame = 0
Query:    9 LQTMILRICQSSPDGLTDAEIVQHLDKNVKPKHRLDTYNELLRNGRLKLLKKSVGEGAQKKDVVVYQWVSLKDAEKFRGLDAAERMVYDMIERSGQNGVTKRDMKFRTNIQNPSELKQIVERLIARGLVKEIKSVQGTNKKVYIASDVEPSTAHTGGPWYNDEQEFDTVFIDTIYAQVLGYM-----------------FSMEYVSVDSVTEYVADLNISNEALSKSDIQQLMMTMLYDSVIEECSGRNDGGE--YFRIVTNTPAVNHLSSIPCGSCPVFHDCSPDGVISPKTCVYMKEWL 290
            ++  IL +C  S  G+TD ++ Q L  N+ P  R+   N+LL+NG++ L+K     G+Q    +VY+        K +G D  E++VY +IE SG  G+  RD+++++N+   +++ +I++ L ++ L+K +KSV  + KKVY+  ++EP  + TGG WY+D Q+F+  F+D +  Q   ++                  +  Y +   +T+Y+++L IS   LS  DI+ ++ T++YD  +E        G+   +R +        L   PCG CPVF DC   G++SP TCVYMK+WL
Sbjct:   15 VEARILELCLGSVKGVTDQQL-QTLIPNISPTQRVTAVNKLLQNGKIDLMK----SGSQ----LVYKVKDPDSTSKVKGGDNQEKLVYQIIEESGNKGIWIRDIRWKSNLLL-TQVNKILKSLESKKLIKAVKSVAASKKKVYMLFNLEPDRSVTGGAWYSD-QDFEAEFVDILNQQCFKFLEQRLELAADMNVDPAARMNKAYATSLDITKYISELGISKVELSVEDIETILNTLIYDGKVEHTIMATATGQKKLYRAMRQITQSTGLMRTPCGVCPVFKDCKEGGIVSPSTCVYMKDWL 304          
BLAST of Ggra5063.t1 vs. uniprot
Match: K4FV19 (DNA-directed RNA polymerase III subunit RPC6 n=5 Tax=Chondrichthyes TaxID=7777 RepID=K4FV19_CALMI)

HSP 1 Score: 171 bits (434), Expect = 5.930e-48
Identity = 103/310 (33.23%), Postives = 170/310 (54.84%), Query Frame = 0
Query:    8 ALQTMILRICQSSPDGLTDAEIVQHLDKNVKPKHRLDTYNELLRNGRLKLLKKSVGEGAQKKDVVVYQWVSLKDAEKFRGLDAAERMVYDMIERSGQNGVTKRDMKFRTNIQNPSELKQIVERLIARGLVKEIKSVQGTNKKVYIASDVEPSTAHTGGPWYNDEQEFDTVFIDTIYAQVLGYMFSMEYVSVDS-----------------VTEYVADLNISNEALSKSDIQQLMMTMLYDSVIEECS--------GRNDGG-EYFRIVTNTPAVNHLSSIPCGSCPVFHDCSPDGVISPKTCVYMKEWLQ 291
            AL++ IL +CQ  P G+TD +++Q+    V+PK R    N LL  G+L LL+ + G        ++Y+    + A K +G D  E++VY +IE +G  G+  RD+++++N+   +E+ +I++ + ++ L+K +KSV  + KKVY+  +++P  + TGG WY+D Q+F++ F++ +  Q   ++ +   V+ +S                 V +Y+ +L IS   LS  DI+ ++ T++YD  +E           G  DG  + FR V        L   PCG CPVF DC   G ISP TC+YM EWLQ
Sbjct:   15 ALESRILELCQQFPHGITD-QVIQNDMPQVEPKKRALAINRLLSMGQLDLLRSAAG--------LLYRMKDSQIASKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPL-TEINKILKNMESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSD-QDFESEFVEVLNQQCFKFLQNKAEVARESKQSPMVQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEVTIIAAKEGTVGSVDGQMKLFRAVNPIIQPTGLVRTPCGMCPVFDDCHEGGDISPATCIYMTEWLQ 313          
BLAST of Ggra5063.t1 vs. uniprot
Match: S4RLM9 (DNA-directed RNA polymerase III subunit RPC6 n=1 Tax=Petromyzon marinus TaxID=7757 RepID=S4RLM9_PETMA)

HSP 1 Score: 171 bits (433), Expect = 8.360e-48
Identity = 98/308 (31.82%), Postives = 167/308 (54.22%), Query Frame = 0
Query:    9 LQTMILRICQSSPDGLTDAEIVQHLDKNVKPKHRLDTYNELLRNGRLKLLKKSVGEGAQKKDVVVYQWVSLKDAEKFRGLDAAERMVYDMIERSGQNGVTKRDMKFRTNIQNPSELKQIVERLIARGLVKEIKSVQGTNKKVYIASDVEPSTAHTGGPWYNDEQEFDTVFIDTIYAQVLGYMF-----------------SMEYVSVDSVTEYVADLNISNEALSKSDIQQLMMTMLYDSVIEECS--------GRNDGG-EYFRIVTNTPAVNHLSSIPCGSCPVFHDCSPDGVISPKTCVYMKEWL 290
            L++ I+ +CQ  P G+TD +++Q+    ++P+ R    N LL  GRL LL+ + G        ++Y+    + A K +G D  E++VY +IE +G  G+  RD+++++N+   +E+ +I++ L ++ L+K +KSV  + KKVY+  ++EP  + TGG WY+D Q+F+  F++ +  Q   ++                  +  Y S   V +Y+ +L IS   LS  D++ ++ T++YD  +E           G  DG  + FR +        L   PCG CP+FH+C   G ISP+TCVYM EW+
Sbjct:   16 LESRIIELCQQFPHGITD-QVIQNDMPQLEPQQRAMAINRLLSTGRLDLLRSNAG--------LLYRLKDAQAASKVKGADNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPL-TEINKILKSLESKKLIKAVKSVAASKKKVYMLYNIEPDRSVTGGAWYSD-QDFEAEFVEILNQQCCKFLQQKADAAQESKQGPLLQRNSSYASSHEVWKYICELGISKVELSMEDVETILNTLIYDGKVERTILSAKEGTVGCVDGYIKLFRAINPLVPPTGLVRTPCGVCPIFHECHEGGDISPETCVYMTEWM 312          
The following BLAST results are available for this feature:
BLAST of Ggra5063.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J6Q78.260e-18283.45DNA-directed RNA polymerase III subunit RPC6 n=1 T... [more]
R7QCX51.450e-12362.64Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
E1Z9339.930e-5133.68DNA-directed RNA polymerase III subunit RPC6 n=1 T... [more]
A0A2P6V1J41.570e-5034.15DNA-directed RNA polymerase III subunit RPC6 n=1 T... [more]
A0A8J4YZ806.970e-5035.00DNA-directed RNA polymerase III subunit RPC6 n=2 T... [more]
A0A1Y1IK162.820e-4934.92DNA-directed RNA polymerase III subunit RPC6 n=1 T... [more]
DNA-directed RNA polymerase III subunit RPC6-like n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF4BA7E1.510e-4832.90DNA-directed RNA polymerase III subunit RPC6-like ... [more]
A0A8J1U5W63.590e-4832.56Ofus.G091195 protein n=1 Tax=Owenia fusiformis Tax... [more]
K4FV195.930e-4833.23DNA-directed RNA polymerase III subunit RPC6 n=5 T... [more]
S4RLM98.360e-4831.82DNA-directed RNA polymerase III subunit RPC6 n=1 T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 7..63
e-value: 3.4E-9
score: 38.3
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 64..147
e-value: 9.0E-20
score: 72.2
IPR007832RNA polymerase Rpc34PFAMPF05158RNA_pol_Rpc34coord: 193..291
e-value: 3.4E-18
score: 66.1
coord: 9..189
e-value: 4.3E-37
score: 128.2
IPR007832RNA polymerase Rpc34PIRSFPIRSF028763RNAP3_C34/C39coord: 5..294
e-value: 3.2E-57
score: 192.0
IPR016049RNA polymerase Rpc34-likePANTHERPTHR12780RNA POLYMERASE III DNA DIRECTED , 39KD SUBUNIT-RELATEDcoord: 12..290
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 80..154
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 8..61

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:372012..372902 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5063.t1Ggra5063.t1Gracilaria gracilis GNS1m malemRNAtig00000069_pilon 372012..372902 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra5063.t1 ID=Ggra5063.t1|Name=Ggra5063.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=297bp
MPDPALRALQTMILRICQSSPDGLTDAEIVQHLDKNVKPKHRLDTYNELL
RNGRLKLLKKSVGEGAQKKDVVVYQWVSLKDAEKFRGLDAAERMVYDMIE
RSGQNGVTKRDMKFRTNIQNPSELKQIVERLIARGLVKEIKSVQGTNKKV
YIASDVEPSTAHTGGPWYNDEQEFDTVFIDTIYAQVLGYMFSMEYVSVDS
VTEYVADLNISNEALSKSDIQQLMMTMLYDSVIEECSGRNDGGEYFRIVT
NTPAVNHLSSIPCGSCPVFHDCSPDGVISPKTCVYMKEWLQQAADW*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036388WH-like_DNA-bd_sf
IPR007832RNA_pol_Rpc34
IPR016049RNA_pol_Rpc34-like
IPR036390WH_DNA-bd_sf