Ggra5202.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra5202.t1
Unique Name	Ggra5202.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	599

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000069_pilon	contig	tig00000069_pilon:745823..747619 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	13035.Dacsa_1802
Preferred name	mutL
PFAMs	DNA_mis_repair,HATPase_c_3,MutL_C
Max annot lvl	1117\|Cyanobacteria
KEGG ko	ko:K03572
KEGG Pathway	ko03430,map03430
GOs	GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391
Evalue	4.83e-67
EggNOG OGs	COG0323@1\|root,COG0323@2\|Bacteria,1G083@1117\|Cyanobacteria
Description	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
COG category	L
BRITE	ko00000,ko00001,ko03400

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra5202	Ggra5202	Gracilaria gracilis GNS1m male	gene	tig00000069_pilon 745823..747619 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5202.t1.start1	Ggra5202.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000069_pilon 745823..745825 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5202.t1.CDS1	Ggra5202.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000069_pilon 745823..747619 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5202.t1.exon1	Ggra5202.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000069_pilon 745823..747619 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5202.t1.stop1	Ggra5202.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000069_pilon 747617..747619 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5202.t1	Ggra5202.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000069_pilon 745823..747619 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000069_pilon:745823..747619+
coding sequence from alignment at tig00000069_pilon:745823..747619+

mRNA sequence

>Ggra5202.t1 ID=Ggra5202.t1|Name=Ggra5202.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=599bp
MEVVQRIASGEVICGYESVVQELVENAIDAQATKVMVDINILNRSITVED
NGVGISLSEGLLDVARCNATTKLSSLQQLENGVDTLGFRGQGLWSIASTS
KLLTISSRSKDSICGTTVSFARDGAPQMESVSDIPMDIGTIVRAVDLPWH
LSINEKRRMIKDCKIWLTRASLCHPQISFYFSRDGSSNWHSATKLGEPQQ
QRMCCLAAQFQCSVSEFRSASVSIPDIGHLSLVVGLPSALHSSSRAWVVT
AVNGRCVNMDWLKRAACEAIQVPRGRYPVAFVHFEVEPQNVNWNISPKKT
AMRFKNDIIKSSIKDACLVLIREALRSNVLANSDEQTVPVDRVIRSRDLT
VSAKVGRFLERLHSRDVSKHQAYEQDPQSLALLNAKVIGQVLNTYILIEY
KSGILLIEQHVADERAIYERLLRLWDESRFEAPEHETVLPSSTKEEHIFS
LTSLGIVIDSYDANGTIMGYHVKAVPVLLATLSSSELVSMLLRLGAEAQT
LADAAASLSCQLAVKNGKTLNNMQMRKIAGELLKCDNPHTCPHGRPIFVD
LQVQELAKLFGRTWIPERSTGTPLRSGFLPTNSSSYLPSRVCKGTLKE*

spliced messenger RNA

>Ggra5202.t1 ID=Ggra5202.t1|Name=Ggra5202.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1797bp|location=Sequence derived from alignment at tig00000069_pilon:745823..747619+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGTCGTCCAACGTATTGCATCTGGCGAAGTGATATGTGGATATGA
ATCAGTAGTACAAGAATTAGTTGAGAACGCCATTGATGCGCAGGCAACCA
AGGTGATGGTGGACATCAACATCCTCAATCGGTCAATCACTGTGGAAGAT
AACGGGGTTGGAATATCATTGTCCGAGGGATTGTTGGACGTTGCCAGATG
CAATGCGACAACTAAGCTTTCTTCCTTACAACAGTTAGAAAACGGCGTTG
ATACTCTGGGATTTAGAGGTCAAGGCTTATGGTCGATAGCAAGCACTTCG
AAGCTCCTGACCATATCCTCTCGATCTAAAGACAGTATCTGCGGCACAAC
CGTGTCGTTCGCACGTGACGGTGCGCCACAGATGGAATCCGTATCCGATA
TTCCAATGGACATTGGAACAATTGTTCGTGCGGTTGATTTACCATGGCAT
CTTAGTATCAATGAAAAGCGACGAATGATTAAGGATTGTAAGATATGGTT
AACTCGCGCTTCTCTGTGTCATCCACAAATCAGCTTCTACTTCTCTAGAG
ATGGTTCATCGAACTGGCACAGCGCAACAAAACTAGGAGAACCTCAACAA
CAACGAATGTGTTGTCTTGCTGCCCAATTTCAATGCTCGGTTTCGGAATT
TCGCAGCGCATCTGTATCCATCCCAGACATTGGGCACCTATCTCTGGTCG
TTGGTCTGCCCTCCGCACTTCACTCGTCTTCGCGTGCCTGGGTTGTCACG
GCTGTTAATGGAAGATGCGTAAATATGGATTGGCTAAAACGGGCTGCTTG
TGAGGCAATTCAAGTCCCACGAGGCCGATATCCAGTCGCATTCGTGCATT
TTGAAGTTGAACCTCAGAATGTAAACTGGAACATTTCCCCGAAGAAGACC
GCTATGCGTTTCAAGAATGACATAATCAAATCTAGCATAAAAGATGCGTG
CCTGGTCTTGATTAGAGAAGCCCTTCGATCAAACGTGCTCGCGAACAGTG
ACGAACAAACAGTTCCCGTCGATAGAGTTATCCGATCACGAGATCTAACG
GTTTCTGCGAAAGTCGGACGTTTCTTGGAAAGGTTGCACAGCCGAGACGT
ATCAAAACATCAAGCATACGAGCAAGATCCGCAGAGTCTGGCTCTATTGA
ATGCCAAAGTCATTGGTCAAGTGCTGAACACGTACATCTTGATCGAGTAC
AAGAGCGGGATTCTGCTCATCGAGCAGCATGTGGCCGACGAGCGCGCGAT
TTATGAGCGACTTCTTCGCTTATGGGATGAATCCCGCTTTGAAGCTCCTG
AACATGAAACTGTTCTTCCCAGTTCTACTAAAGAAGAACATATTTTTTCG
CTCACATCTCTCGGAATTGTTATCGACTCTTACGATGCCAACGGAACCAT
CATGGGGTACCATGTGAAGGCTGTTCCCGTACTGTTGGCTACACTTTCTT
CTTCCGAACTCGTTTCGATGCTTCTCAGGCTGGGTGCCGAGGCGCAGACA
CTGGCAGATGCTGCTGCATCGCTTTCTTGTCAATTGGCTGTAAAAAACGG
AAAGACGCTGAACAATATGCAGATGAGAAAGATCGCAGGAGAACTCTTGA
AATGTGATAATCCACACACCTGTCCCCATGGTCGACCGATTTTTGTTGAT
TTACAAGTGCAAGAACTAGCTAAACTATTTGGACGCACGTGGATTCCGGA
GCGGAGCACTGGTACGCCCCTGAGATCAGGTTTCTTGCCAACGAACTCAA
GTTCATATCTTCCGTCCCGAGTTTGTAAAGGCACACTGAAGGAATAG

protein sequence of Ggra5202.t1

>Ggra5202.t1 ID=Ggra5202.t1|Name=Ggra5202.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=599bp
MEVVQRIASGEVICGYESVVQELVENAIDAQATKVMVDINILNRSITVED
NGVGISLSEGLLDVARCNATTKLSSLQQLENGVDTLGFRGQGLWSIASTS
KLLTISSRSKDSICGTTVSFARDGAPQMESVSDIPMDIGTIVRAVDLPWH
LSINEKRRMIKDCKIWLTRASLCHPQISFYFSRDGSSNWHSATKLGEPQQ
QRMCCLAAQFQCSVSEFRSASVSIPDIGHLSLVVGLPSALHSSSRAWVVT
AVNGRCVNMDWLKRAACEAIQVPRGRYPVAFVHFEVEPQNVNWNISPKKT
AMRFKNDIIKSSIKDACLVLIREALRSNVLANSDEQTVPVDRVIRSRDLT
VSAKVGRFLERLHSRDVSKHQAYEQDPQSLALLNAKVIGQVLNTYILIEY
KSGILLIEQHVADERAIYERLLRLWDESRFEAPEHETVLPSSTKEEHIFS
LTSLGIVIDSYDANGTIMGYHVKAVPVLLATLSSSELVSMLLRLGAEAQT
LADAAASLSCQLAVKNGKTLNNMQMRKIAGELLKCDNPHTCPHGRPIFVD
LQVQELAKLFGRTWIPERSTGTPLRSGFLPTNSSSYLPSRVCKGTLKE*

mRNA from alignment at tig00000069_pilon:745823..747619+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra5202.t1 ID=Ggra5202.t1|Name=Ggra5202.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1797bp|location=Sequence derived from alignment at tig00000069_pilon:745823..747619+ (Gracilaria gracilis GNS1m male)
ATGGAAGTCGTCCAACGTATTGCATCTGGCGAAGTGATATGTGGATATGA
ATCAGTAGTACAAGAATTAGTTGAGAACGCCATTGATGCGCAGGCAACCA
AGGTGATGGTGGACATCAACATCCTCAATCGGTCAATCACTGTGGAAGAT
AACGGGGTTGGAATATCATTGTCCGAGGGATTGTTGGACGTTGCCAGATG
CAATGCGACAACTAAGCTTTCTTCCTTACAACAGTTAGAAAACGGCGTTG
ATACTCTGGGATTTAGAGGTCAAGGCTTATGGTCGATAGCAAGCACTTCG
AAGCTCCTGACCATATCCTCTCGATCTAAAGACAGTATCTGCGGCACAAC
CGTGTCGTTCGCACGTGACGGTGCGCCACAGATGGAATCCGTATCCGATA
TTCCAATGGACATTGGAACAATTGTTCGTGCGGTTGATTTACCATGGCAT
CTTAGTATCAATGAAAAGCGACGAATGATTAAGGATTGTAAGATATGGTT
AACTCGCGCTTCTCTGTGTCATCCACAAATCAGCTTCTACTTCTCTAGAG
ATGGTTCATCGAACTGGCACAGCGCAACAAAACTAGGAGAACCTCAACAA
CAACGAATGTGTTGTCTTGCTGCCCAATTTCAATGCTCGGTTTCGGAATT
TCGCAGCGCATCTGTATCCATCCCAGACATTGGGCACCTATCTCTGGTCG
TTGGTCTGCCCTCCGCACTTCACTCGTCTTCGCGTGCCTGGGTTGTCACG
GCTGTTAATGGAAGATGCGTAAATATGGATTGGCTAAAACGGGCTGCTTG
TGAGGCAATTCAAGTCCCACGAGGCCGATATCCAGTCGCATTCGTGCATT
TTGAAGTTGAACCTCAGAATGTAAACTGGAACATTTCCCCGAAGAAGACC
GCTATGCGTTTCAAGAATGACATAATCAAATCTAGCATAAAAGATGCGTG
CCTGGTCTTGATTAGAGAAGCCCTTCGATCAAACGTGCTCGCGAACAGTG
ACGAACAAACAGTTCCCGTCGATAGAGTTATCCGATCACGAGATCTAACG
GTTTCTGCGAAAGTCGGACGTTTCTTGGAAAGGTTGCACAGCCGAGACGT
ATCAAAACATCAAGCATACGAGCAAGATCCGCAGAGTCTGGCTCTATTGA
ATGCCAAAGTCATTGGTCAAGTGCTGAACACGTACATCTTGATCGAGTAC
AAGAGCGGGATTCTGCTCATCGAGCAGCATGTGGCCGACGAGCGCGCGAT
TTATGAGCGACTTCTTCGCTTATGGGATGAATCCCGCTTTGAAGCTCCTG
AACATGAAACTGTTCTTCCCAGTTCTACTAAAGAAGAACATATTTTTTCG
CTCACATCTCTCGGAATTGTTATCGACTCTTACGATGCCAACGGAACCAT
CATGGGGTACCATGTGAAGGCTGTTCCCGTACTGTTGGCTACACTTTCTT
CTTCCGAACTCGTTTCGATGCTTCTCAGGCTGGGTGCCGAGGCGCAGACA
CTGGCAGATGCTGCTGCATCGCTTTCTTGTCAATTGGCTGTAAAAAACGG
AAAGACGCTGAACAATATGCAGATGAGAAAGATCGCAGGAGAACTCTTGA
AATGTGATAATCCACACACCTGTCCCCATGGTCGACCGATTTTTGTTGAT
TTACAAGTGCAAGAACTAGCTAAACTATTTGGACGCACGTGGATTCCGGA
GCGGAGCACTGGTACGCCCCTGAGATCAGGTTTCTTGCCAACGAACTCAA
GTTCATATCTTCCGTCCCGAGTTTGTAAAGGCACACTGAAGGAATAG

Coding sequence (CDS) from alignment at tig00000069_pilon:745823..747619+

>Ggra5202.t1 ID=Ggra5202.t1|Name=Ggra5202.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1797bp|location=Sequence derived from alignment at tig00000069_pilon:745823..747619+ (Gracilaria gracilis GNS1m male)
ATGGAAGTCGTCCAACGTATTGCATCTGGCGAAGTGATATGTGGATATGA
ATCAGTAGTACAAGAATTAGTTGAGAACGCCATTGATGCGCAGGCAACCA
AGGTGATGGTGGACATCAACATCCTCAATCGGTCAATCACTGTGGAAGAT
AACGGGGTTGGAATATCATTGTCCGAGGGATTGTTGGACGTTGCCAGATG
CAATGCGACAACTAAGCTTTCTTCCTTACAACAGTTAGAAAACGGCGTTG
ATACTCTGGGATTTAGAGGTCAAGGCTTATGGTCGATAGCAAGCACTTCG
AAGCTCCTGACCATATCCTCTCGATCTAAAGACAGTATCTGCGGCACAAC
CGTGTCGTTCGCACGTGACGGTGCGCCACAGATGGAATCCGTATCCGATA
TTCCAATGGACATTGGAACAATTGTTCGTGCGGTTGATTTACCATGGCAT
CTTAGTATCAATGAAAAGCGACGAATGATTAAGGATTGTAAGATATGGTT
AACTCGCGCTTCTCTGTGTCATCCACAAATCAGCTTCTACTTCTCTAGAG
ATGGTTCATCGAACTGGCACAGCGCAACAAAACTAGGAGAACCTCAACAA
CAACGAATGTGTTGTCTTGCTGCCCAATTTCAATGCTCGGTTTCGGAATT
TCGCAGCGCATCTGTATCCATCCCAGACATTGGGCACCTATCTCTGGTCG
TTGGTCTGCCCTCCGCACTTCACTCGTCTTCGCGTGCCTGGGTTGTCACG
GCTGTTAATGGAAGATGCGTAAATATGGATTGGCTAAAACGGGCTGCTTG
TGAGGCAATTCAAGTCCCACGAGGCCGATATCCAGTCGCATTCGTGCATT
TTGAAGTTGAACCTCAGAATGTAAACTGGAACATTTCCCCGAAGAAGACC
GCTATGCGTTTCAAGAATGACATAATCAAATCTAGCATAAAAGATGCGTG
CCTGGTCTTGATTAGAGAAGCCCTTCGATCAAACGTGCTCGCGAACAGTG
ACGAACAAACAGTTCCCGTCGATAGAGTTATCCGATCACGAGATCTAACG
GTTTCTGCGAAAGTCGGACGTTTCTTGGAAAGGTTGCACAGCCGAGACGT
ATCAAAACATCAAGCATACGAGCAAGATCCGCAGAGTCTGGCTCTATTGA
ATGCCAAAGTCATTGGTCAAGTGCTGAACACGTACATCTTGATCGAGTAC
AAGAGCGGGATTCTGCTCATCGAGCAGCATGTGGCCGACGAGCGCGCGAT
TTATGAGCGACTTCTTCGCTTATGGGATGAATCCCGCTTTGAAGCTCCTG
AACATGAAACTGTTCTTCCCAGTTCTACTAAAGAAGAACATATTTTTTCG
CTCACATCTCTCGGAATTGTTATCGACTCTTACGATGCCAACGGAACCAT
CATGGGGTACCATGTGAAGGCTGTTCCCGTACTGTTGGCTACACTTTCTT
CTTCCGAACTCGTTTCGATGCTTCTCAGGCTGGGTGCCGAGGCGCAGACA
CTGGCAGATGCTGCTGCATCGCTTTCTTGTCAATTGGCTGTAAAAAACGG
AAAGACGCTGAACAATATGCAGATGAGAAAGATCGCAGGAGAACTCTTGA
AATGTGATAATCCACACACCTGTCCCCATGGTCGACCGATTTTTGTTGAT
TTACAAGTGCAAGAACTAGCTAAACTATTTGGACGCACGTGGATTCCGGA
GCGGAGCACTGGTACGCCCCTGAGATCAGGTTTCTTGCCAACGAACTCAA
GTTCATATCTTCCGTCCCGAGTTTGTAAAGGCACACTGAAGGAATAG