Ggra5187.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra5187.t1
Unique NameGgra5187.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length334
Homology
BLAST of Ggra5187.t1 vs. uniprot
Match: A0A2V3J7E4 (Rho GTPase-activating protein 22 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J7E4_9FLOR)

HSP 1 Score: 534 bits (1376), Expect = 1.450e-189
Identity = 274/341 (80.35%), Postives = 294/341 (86.22%), Query Frame = 0
Query:    1 MATAGLHTDA---LGEPAIVRQEDMMAGMMGGGGTGIVDNGTSLIARAEALNAFMRMQPAANQARQMPHSL-APTSLPPRPSSQYDPPVEPGCLCFGSSKPS-RRPPTRHVSSHVT--RPRREYYPDNLSVQPARHPWTPHMEWLILACIDFLELNGLGERTLFAVSAVDDLVRNMQVDLGANLPSNTDPHVAAGVIKAQIRHANEPLVAKDCLRAYIESQPSDDSQG-ASTLKTSASYRESHLARTVDATARLSSPKRAYILARFMRLLGRVSANVEVSKMNAHCLAKCVAPSMLHWDPNSSFALLMLGKITAFVMNMIEDARVYDENLCQKISELQSST 333
            MA AGLH      +GEPAI+ +EDMMAGMMGGGGTGIVDNGTSLIARAEALNAFMRMQPAANQAR  PH+  AP      PS  YDPP EPGCLCFGSSK S RRPP RHV +H++  RPRREYYPDNLSVQP RHPWTPHMEWLILACIDFLEL+GL ERTLFAVSAVDDLVRNM VD+G  LPSNTDPHVAAGVIKAQIRHANEPLVAKDCL+AYI SQP DD Q  A    T + YR+SHLARTVDAT R+SSP+RAYILARFMRLLGRVSANVEVSKMNAHCLAKCVAPSMLHWDPNSSFALLMLGKITAFVM MIEDARV+DE LCQKI++L++ +
Sbjct:    1 MAAAGLHRHQDPPIGEPAIIHKEDMMAGMMGGGGTGIVDNGTSLIARAEALNAFMRMQPAANQARHAPHTFSAPPPQQHIPSPHYDPPEEPGCLCFGSSKQSSRRPPARHVPNHISSARPRREYYPDNLSVQPERHPWTPHMEWLILACIDFLELHGLDERTLFAVSAVDDLVRNMHVDIGVKLPSNTDPHVAAGVIKAQIRHANEPLVAKDCLKAYIASQPPDDGQSTAPAASTPSIYRDSHLARTVDATERMSSPRRAYILARFMRLLGRVSANVEVSKMNAHCLAKCVAPSMLHWDPNSSFALLMLGKITAFVMTMIEDARVFDEKLCQKIADLEAKS 341          
BLAST of Ggra5187.t1 vs. uniprot
Match: R7QNW3 (Rho-GAP domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QNW3_CHOCR)

HSP 1 Score: 335 bits (858), Expect = 4.980e-112
Identity = 181/276 (65.58%), Postives = 202/276 (73.19%), Query Frame = 0
Query:   54 MQPAANQARQMPHSLAPTSLPPRPSSQYDPPVEPGCLCFGSSKPSRRPPTRHVSSHVTRPRREYYPDNLSVQPARHPWTPHMEWLILACIDFLELNGLGERTLFAVSAVDDLVRNMQVDLGANLPSNTDPHVAAGVIKAQIRHANEPLVAKDCLRAYIESQPSDDSQGASTLKTSASYRESHLARTVDATARLSSPKRAYILARFMRLLGRVSANVEVSKMNAHCLAKCVAPSMLHWDPNSSFALLMLGKITAFVMNMIEDARVYDENLCQKISEL 329
            MQP ANQAR    S +PT     P+         GC C GS    +  P+R V+    R +REYYPDNLS+QP RH W   MEWLI+AC+DFLE  GL ER +FAVSAVDDLVRNM V+ G  L  NTDP+VAAGVIKAQIRHA+E LV K+CLR YIE Q + +  G S      SY ESHLARTVD T R+S  +RAY+LAR MRLLGRVSAN EVS+MNAHCLAKCVAPSMLHWDPNS FALLMLGKITAFVM MIEDARV+DENLCQKI EL
Sbjct:    1 MQPVANQARHQ--STSPTIPSEEPA---------GCFCLGSRTVHQ--PSREVAH---RTKREYYPDNLSIQPNRHKWGRRMEWLIVACVDFLEKEGLDERNIFAVSAVDDLVRNMTVEEGEELAKNTDPNVAAGVIKAQIRHADEALVGKECLRTYIELQQAREGDG-SPGDGLRSYEESHLARTVDDTKRISGARRAYVLARIMRLLGRVSANEEVSRMNAHCLAKCVAPSMLHWDPNSGFALLMLGKITAFVMTMIEDARVFDENLCQKIDEL 259          
BLAST of Ggra5187.t1 vs. uniprot
Match: A0A7S1TMH3 (Hypothetical protein (Fragment) n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1TMH3_9RHOD)

HSP 1 Score: 161 bits (408), Expect = 1.750e-43
Identity = 111/334 (33.23%), Postives = 168/334 (50.30%), Query Frame = 0
Query:   15 AIVRQEDMMAGMMGGGGTGIVDNGTSLIARAEALNAFMRMQPA-------ANQARQMPHSLAPTSLPPRPSSQYDPPVEPGCLCFGSSKPSRRPPTRHVSSHVTRPRREYYPDNLSVQPARHPWTPHMEWLILACIDFLELNGLGERTLFAVSAVDDLVRNMQVDLGANLPSNTDPHVAAGVIKAQIRHANEPLVAKDCLRAYIESQPS-------------------DDSQGASTLKTSASYRESHLARTVDATARLSSPKRAYILARFMRLLGRVSANVEVSKMNAHCLAKCVAPSMLHWDPNSSFALLMLGKITAFVMNMIEDARVYDENL 322
            A++ Q++++AG         V+  T LIAR EAL  F + Q         A  A Q P++ +  +        +   V     CFG+   +        S+    P        L VQ  +  W    E  +L CID L   G+ E+ LFAVSA  D V  ++V LG  LP N D HVAA  IK ++RHA EP +    L+ ++E + S                    D Q A+    S S+ +S + +T++      SPKRAY+ ARF+ LLG +++ +E ++MN+H LA C+ PS+L WD N+  ALL+L ++TAFV+ +I+DA++Y E +
Sbjct:    9 AVMGQQELLAGT--------VEKETLLIARPEALGHFEQQQAXXXXXXXRAAHAVQTPNAASANNSNSNSKQGFFSKV----FCFGADNSTATAAPSSGSARAAAPANL----ELEVQRKKFEWNELTEHTLLVCIDHLFKYGIREQRLFAVSADQDDVDALRVQLGMPLPENVDLHVAAATIKDRMRHAKEPFMPIAALKPWLEKKRSAAAETEHMSPPHSGRSSSFSDDQCAAL--ASGSFEDSVIKQTLEIMRNEVSPKRAYLCARFLLLLGYIASGIETTQMNSHNLALCITPSLLQWDNNAKQALLILSRMTAFVIQLIDDAQLYSEKV 324          
BLAST of Ggra5187.t1 vs. uniprot
Match: A0A1X6PAA0 (Rho-GAP domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PAA0_PORUM)

HSP 1 Score: 108 bits (269), Expect = 2.030e-23
Identity = 74/197 (37.56%), Postives = 96/197 (48.73%), Query Frame = 0
Query:   42 IARAEALNAFMRMQPAANQA--RQMPHSLA----PTSLPPRPSSQYDPP---------------------VEPGCLCFGSSKPSRRPPTRHVSSHVTRPRREYYPDNLSVQPARHPWTPHMEWLILACIDFLELNGLGERTLFAVSAVDDLVRNMQVDLGANLPSNTDPHVAAGVIKAQIRHANEPLVAKDCLRAYI 211
            IAR EA+N F++MQP A++A  R +  + A     T +  RPS   +                       + P   C G ++  R P                       +P R PWTP  EW I+AC++ L+  GL E  LFAVSAVD  VR ++V +GA LP  TDPHVA G IKA IR A+EPLV    L+AYI
Sbjct:   33 IARPEAMNVFIQMQPEASKALNRNLAAAAARQARSTDVDARPSGSRERNQTTRXXXXXXXXXXXXXXXLLLRPQRRCRGLARGGRAPXXXXXXXXXXX---XXXXXXXXXEPPRLPWTPDTEWQIVACVELLQREGLDEPNLFAVSAVDAHVRRLRVRVGAPLPGGTDPHVATGAIKAHIRAADEPLVPAASLQAYI 226          
The following BLAST results are available for this feature:
BLAST of Ggra5187.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3J7E41.450e-18980.35Rho GTPase-activating protein 22 n=1 Tax=Gracilari... [more]
R7QNW34.980e-11265.58Rho-GAP domain-containing protein n=1 Tax=Chondrus... [more]
A0A7S1TMH31.750e-4333.23Hypothetical protein (Fragment) n=1 Tax=Erythrolob... [more]
A0A1X6PAA02.030e-2337.56Rho-GAP domain-containing protein n=1 Tax=Porphyra... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000198Rho GTPase-activating protein domainSMARTSM00324RhoGAP_3coord: 133..316
e-value: 2.1E-5
score: 22.7
IPR000198Rho GTPase-activating protein domainPFAMPF00620RhoGAPcoord: 139..291
e-value: 2.3E-15
score: 56.7
IPR000198Rho GTPase-activating protein domainPROSITEPS50238RHOGAPcoord: 120..319
score: 15.777079
IPR008936Rho GTPase activation proteinGENE3D1.10.555.10Rho GTPase activation proteincoord: 135..324
e-value: 4.1E-22
score: 80.5
IPR008936Rho GTPase activation proteinSUPERFAMILY48350GTPase activation domain, GAPcoord: 138..316
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 56..81
NoneNo IPR availablePANTHERPTHR45808:SF2RHO GTPASE-ACTIVATING PROTEIN 68Fcoord: 138..315
NoneNo IPR availablePANTHERPTHR45808RHO GTPASE-ACTIVATING PROTEIN 68Fcoord: 138..315
NoneNo IPR availableCDDcd00159RhoGAPcoord: 138..314
e-value: 3.65981E-22
score: 89.6684

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:708156..709157 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5187.t1Ggra5187.t1Gracilaria gracilis GNS1m malemRNAtig00000069_pilon 708156..709157 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra5187.t1 ID=Ggra5187.t1|Name=Ggra5187.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=334bp
MATAGLHTDALGEPAIVRQEDMMAGMMGGGGTGIVDNGTSLIARAEALNA
FMRMQPAANQARQMPHSLAPTSLPPRPSSQYDPPVEPGCLCFGSSKPSRR
PPTRHVSSHVTRPRREYYPDNLSVQPARHPWTPHMEWLILACIDFLELNG
LGERTLFAVSAVDDLVRNMQVDLGANLPSNTDPHVAAGVIKAQIRHANEP
LVAKDCLRAYIESQPSDDSQGASTLKTSASYRESHLARTVDATARLSSPK
RAYILARFMRLLGRVSANVEVSKMNAHCLAKCVAPSMLHWDPNSSFALLM
LGKITAFVMNMIEDARVYDENLCQKISELQSST*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000198RhoGAP_dom
IPR008936Rho_GTPase_activation_prot