Ggra5187.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5187.t1
Unique NameGgra5187.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length334
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:708156..709157 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog244447.XP_008323259.1
Preferred nameARHGAP1
PFAMsCRAL_TRIO_2,RhoGAP
Max annot lvl33208|Metazoa
KEGG koko:K18470,ko:K20633
GOsGO:0000041,GO:0001703,GO:0001726,GO:0002009,GO:0002165,GO:0003674,GO:0005070,GO:0005096,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0005829,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006826,GO:0007154,GO:0007165,GO:0007264,GO:0007265,GO:0007266,GO:0007275,GO:0007369,GO:0007370,GO:0007444,GO:0007478,GO:0007480,GO:0007552,GO:0007560,GO:0008047,GO:0008104,GO:0008150,GO:0008582,GO:0009653,GO:0009790,GO:0009791,GO:0009886,GO:0009887,GO:0009888,GO:0009966,GO:0009967,GO:0009987,GO:0010004,GO:0010008,GO:0010639,GO:0010646,GO:0010647,GO:0012505,GO:0015031,GO:0015682,GO:0015833,GO:0016020,GO:0016192,GO:0016197,GO:0017016,GO:0017137,GO:0019899,GO:0023051,GO:0023052,GO:0023056,GO:0030001,GO:0030234,GO:0030674,GO:0030695,GO:0031090,GO:0031252,GO:0031267,GO:0031410,GO:0031982,GO:0032231,GO:0032232,GO:0032386,GO:0032387,GO:0032501,GO:0032502,GO:0032879,GO:0032956,GO:0032970,GO:0033036,GO:0033043,GO:0033216,GO:0033572,GO:0034220,GO:0034755,GO:0035107,GO:0035114,GO:0035120,GO:0035218,GO:0035239,GO:0035295,GO:0035556,GO:0035591,GO:0040008,GO:0042886,GO:0042995,GO:0043085,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043547,GO:0044087,GO:0044089,GO:0044093,GO:0044422,GO:0044424,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045887,GO:0045927,GO:0046907,GO:0048471,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048563,GO:0048569,GO:0048583,GO:0048584,GO:0048598,GO:0048638,GO:0048639,GO:0048646,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048856,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050803,GO:0050807,GO:0050896,GO:0051020,GO:0051049,GO:0051051,GO:0051056,GO:0051094,GO:0051128,GO:0051129,GO:0051130,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051336,GO:0051345,GO:0051492,GO:0051493,GO:0051494,GO:0051497,GO:0051641,GO:0051649,GO:0051716,GO:0051960,GO:0051962,GO:0051963,GO:0051965,GO:0055037,GO:0055085,GO:0060090,GO:0060341,GO:0060429,GO:0060562,GO:0060589,GO:0060627,GO:0065007,GO:0065008,GO:0065009,GO:0071702,GO:0071705,GO:0071944,GO:0072512,GO:0097286,GO:0097708,GO:0098588,GO:0098655,GO:0098657,GO:0098659,GO:0098660,GO:0098662,GO:0098706,GO:0098711,GO:0098739,GO:0098772,GO:0098805,GO:0099587,GO:0110020,GO:0110053,GO:0120025,GO:1902531,GO:1902903,GO:1902904,GO:1904396,GO:1904398,GO:2000026,GO:2001135,GO:2001136
Evalue2.58e-06
EggNOG OGsKOG4406@1|root,KOG4406@2759|Eukaryota,38DDC@33154|Opisthokonta,3BCGA@33208|Metazoa,3CRHD@33213|Bilateria,482MN@7711|Chordata,492RD@7742|Vertebrata,49T4Y@7898|Actinopterygii
DescriptionRho GTPase activating protein 1
COG categoryT
BRITEko00000,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5187Ggra5187Gracilaria gracilis GNS1m malegenetig00000069_pilon 708156..709157 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5187.t1.stop1Ggra5187.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000069_pilon 708156..708158 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5187.t1.CDS1Ggra5187.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000069_pilon 708156..709157 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5187.t1.exon1Ggra5187.t1.exon1Gracilaria gracilis GNS1m maleexontig00000069_pilon 708156..709157 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5187.t1.start1Ggra5187.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000069_pilon 709155..709157 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5187.t1Ggra5187.t1Gracilaria gracilis GNS1m malepolypeptidetig00000069_pilon 708156..709157 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5187.t1 ID=Ggra5187.t1|Name=Ggra5187.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=334bp
MATAGLHTDALGEPAIVRQEDMMAGMMGGGGTGIVDNGTSLIARAEALNA
FMRMQPAANQARQMPHSLAPTSLPPRPSSQYDPPVEPGCLCFGSSKPSRR
PPTRHVSSHVTRPRREYYPDNLSVQPARHPWTPHMEWLILACIDFLELNG
LGERTLFAVSAVDDLVRNMQVDLGANLPSNTDPHVAAGVIKAQIRHANEP
LVAKDCLRAYIESQPSDDSQGASTLKTSASYRESHLARTVDATARLSSPK
RAYILARFMRLLGRVSANVEVSKMNAHCLAKCVAPSMLHWDPNSSFALLM
LGKITAFVMNMIEDARVYDENLCQKISELQSST*
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spliced messenger RNA

>Ggra5187.t1 ID=Ggra5187.t1|Name=Ggra5187.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1002bp|location=Sequence derived from alignment at tig00000069_pilon:708156..709157- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTACCGCCGGCCTGCACACCGACGCCCTCGGCGAGCCTGCCATCGT
GCGGCAGGAGGATATGATGGCAGGGATGATGGGCGGCGGTGGCACCGGTA
TAGTCGACAATGGAACAAGTCTCATCGCGCGTGCTGAGGCGCTCAACGCC
TTTATGAGGATGCAACCGGCAGCCAATCAGGCCAGGCAGATGCCACACTC
GCTCGCTCCAACTTCCTTGCCGCCCCGCCCCTCCTCGCAGTATGACCCAC
CCGTCGAGCCTGGCTGCCTGTGTTTCGGCTCTTCAAAGCCGTCACGACGT
CCTCCAACTCGGCATGTCTCCAGTCATGTAACGCGCCCGAGACGCGAGTA
TTATCCTGATAATCTTTCTGTCCAGCCTGCACGCCATCCGTGGACGCCGC
ACATGGAATGGCTCATTCTCGCTTGTATCGATTTTCTCGAGCTCAATGGG
CTGGGTGAACGCACCTTGTTCGCCGTCAGTGCCGTAGATGATCTAGTTCG
AAACATGCAGGTTGATCTTGGCGCCAATCTTCCGTCAAACACTGATCCGC
ACGTTGCGGCTGGCGTCATCAAGGCGCAGATTCGGCATGCGAATGAGCCG
CTCGTGGCAAAGGACTGTCTGCGAGCCTACATTGAATCACAGCCCTCTGA
CGATTCTCAGGGCGCTTCTACACTCAAGACATCAGCAAGCTATCGCGAGT
CACACCTTGCACGAACCGTGGACGCCACCGCGCGCCTTTCATCACCGAAG
CGCGCGTACATTTTGGCTAGATTTATGAGGTTGTTAGGGCGTGTCTCGGC
TAATGTTGAGGTATCTAAGATGAATGCTCATTGCCTAGCCAAGTGCGTGG
CGCCTTCTATGCTGCACTGGGACCCGAATTCCAGCTTTGCTTTGCTCATG
CTAGGAAAGATTACCGCGTTTGTCATGAACATGATTGAGGATGCAAGGGT
CTATGACGAGAATCTGTGTCAAAAGATATCGGAGCTACAATCGAGCACTT
AA
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protein sequence of Ggra5187.t1

>Ggra5187.t1 ID=Ggra5187.t1|Name=Ggra5187.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=334bp
MATAGLHTDALGEPAIVRQEDMMAGMMGGGGTGIVDNGTSLIARAEALNA
FMRMQPAANQARQMPHSLAPTSLPPRPSSQYDPPVEPGCLCFGSSKPSRR
PPTRHVSSHVTRPRREYYPDNLSVQPARHPWTPHMEWLILACIDFLELNG
LGERTLFAVSAVDDLVRNMQVDLGANLPSNTDPHVAAGVIKAQIRHANEP
LVAKDCLRAYIESQPSDDSQGASTLKTSASYRESHLARTVDATARLSSPK
RAYILARFMRLLGRVSANVEVSKMNAHCLAKCVAPSMLHWDPNSSFALLM
LGKITAFVMNMIEDARVYDENLCQKISELQSST*
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mRNA from alignment at tig00000069_pilon:708156..709157-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5187.t1 ID=Ggra5187.t1|Name=Ggra5187.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1002bp|location=Sequence derived from alignment at tig00000069_pilon:708156..709157- (Gracilaria gracilis GNS1m male)
ATGGCTACCGCCGGCCTGCACACCGACGCCCTCGGCGAGCCTGCCATCGT
GCGGCAGGAGGATATGATGGCAGGGATGATGGGCGGCGGTGGCACCGGTA
TAGTCGACAATGGAACAAGTCTCATCGCGCGTGCTGAGGCGCTCAACGCC
TTTATGAGGATGCAACCGGCAGCCAATCAGGCCAGGCAGATGCCACACTC
GCTCGCTCCAACTTCCTTGCCGCCCCGCCCCTCCTCGCAGTATGACCCAC
CCGTCGAGCCTGGCTGCCTGTGTTTCGGCTCTTCAAAGCCGTCACGACGT
CCTCCAACTCGGCATGTCTCCAGTCATGTAACGCGCCCGAGACGCGAGTA
TTATCCTGATAATCTTTCTGTCCAGCCTGCACGCCATCCGTGGACGCCGC
ACATGGAATGGCTCATTCTCGCTTGTATCGATTTTCTCGAGCTCAATGGG
CTGGGTGAACGCACCTTGTTCGCCGTCAGTGCCGTAGATGATCTAGTTCG
AAACATGCAGGTTGATCTTGGCGCCAATCTTCCGTCAAACACTGATCCGC
ACGTTGCGGCTGGCGTCATCAAGGCGCAGATTCGGCATGCGAATGAGCCG
CTCGTGGCAAAGGACTGTCTGCGAGCCTACATTGAATCACAGCCCTCTGA
CGATTCTCAGGGCGCTTCTACACTCAAGACATCAGCAAGCTATCGCGAGT
CACACCTTGCACGAACCGTGGACGCCACCGCGCGCCTTTCATCACCGAAG
CGCGCGTACATTTTGGCTAGATTTATGAGGTTGTTAGGGCGTGTCTCGGC
TAATGTTGAGGTATCTAAGATGAATGCTCATTGCCTAGCCAAGTGCGTGG
CGCCTTCTATGCTGCACTGGGACCCGAATTCCAGCTTTGCTTTGCTCATG
CTAGGAAAGATTACCGCGTTTGTCATGAACATGATTGAGGATGCAAGGGT
CTATGACGAGAATCTGTGTCAAAAGATATCGGAGCTACAATCGAGCACTT
AA
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Coding sequence (CDS) from alignment at tig00000069_pilon:708156..709157-

>Ggra5187.t1 ID=Ggra5187.t1|Name=Ggra5187.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1002bp|location=Sequence derived from alignment at tig00000069_pilon:708156..709157- (Gracilaria gracilis GNS1m male)
ATGGCTACCGCCGGCCTGCACACCGACGCCCTCGGCGAGCCTGCCATCGT
GCGGCAGGAGGATATGATGGCAGGGATGATGGGCGGCGGTGGCACCGGTA
TAGTCGACAATGGAACAAGTCTCATCGCGCGTGCTGAGGCGCTCAACGCC
TTTATGAGGATGCAACCGGCAGCCAATCAGGCCAGGCAGATGCCACACTC
GCTCGCTCCAACTTCCTTGCCGCCCCGCCCCTCCTCGCAGTATGACCCAC
CCGTCGAGCCTGGCTGCCTGTGTTTCGGCTCTTCAAAGCCGTCACGACGT
CCTCCAACTCGGCATGTCTCCAGTCATGTAACGCGCCCGAGACGCGAGTA
TTATCCTGATAATCTTTCTGTCCAGCCTGCACGCCATCCGTGGACGCCGC
ACATGGAATGGCTCATTCTCGCTTGTATCGATTTTCTCGAGCTCAATGGG
CTGGGTGAACGCACCTTGTTCGCCGTCAGTGCCGTAGATGATCTAGTTCG
AAACATGCAGGTTGATCTTGGCGCCAATCTTCCGTCAAACACTGATCCGC
ACGTTGCGGCTGGCGTCATCAAGGCGCAGATTCGGCATGCGAATGAGCCG
CTCGTGGCAAAGGACTGTCTGCGAGCCTACATTGAATCACAGCCCTCTGA
CGATTCTCAGGGCGCTTCTACACTCAAGACATCAGCAAGCTATCGCGAGT
CACACCTTGCACGAACCGTGGACGCCACCGCGCGCCTTTCATCACCGAAG
CGCGCGTACATTTTGGCTAGATTTATGAGGTTGTTAGGGCGTGTCTCGGC
TAATGTTGAGGTATCTAAGATGAATGCTCATTGCCTAGCCAAGTGCGTGG
CGCCTTCTATGCTGCACTGGGACCCGAATTCCAGCTTTGCTTTGCTCATG
CTAGGAAAGATTACCGCGTTTGTCATGAACATGATTGAGGATGCAAGGGT
CTATGACGAGAATCTGTGTCAAAAGATATCGGAGCTACAATCGAGCACTT
AA
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