Ggra5170.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra5170.t1
Unique Name	Ggra5170.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	605

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000069_pilon	contig	tig00000069_pilon:664424..666238 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3641.EOX96473
Preferred name	VAD1
PFAMs	DUF4782,GRAM
Max annot lvl	35493\|Streptophyta
GOs	GO:0001101,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006950,GO:0006952,GO:0008150,GO:0009605,GO:0009607,GO:0009617,GO:0009719,GO:0009723,GO:0009725,GO:0009751,GO:0010033,GO:0010941,GO:0012505,GO:0014070,GO:0042221,GO:0042493,GO:0042742,GO:0043067,GO:0043069,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0046677,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051704,GO:0051707,GO:0060548,GO:0065007,GO:0098542,GO:1901700
Evalue	6.2e-21
EggNOG OGs	KOG1032@1\|root,KOG1032@2759\|Eukaryota,37IJ8@33090\|Viridiplantae,3G8QF@35493\|Streptophyta
Description	GRAM domain-containing protein
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra5170	Ggra5170	Gracilaria gracilis GNS1m male	gene	tig00000069_pilon 664424..666238 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5170.t1.stop1	Ggra5170.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000069_pilon 664424..664426 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5170.t1.CDS1	Ggra5170.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000069_pilon 664424..666238 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5170.t1.exon1	Ggra5170.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000069_pilon 664424..666238 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5170.t1.start1	Ggra5170.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000069_pilon 666236..666238 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5170.t1	Ggra5170.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000069_pilon 664424..666238 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000069_pilon:664424..666238-
coding sequence from alignment at tig00000069_pilon:664424..666238-

mRNA sequence

>Ggra5170.t1 ID=Ggra5170.t1|Name=Ggra5170.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=605bp
MTVPSAEQSQDAQPDLFPASSIYVSTAAHDNTISQTTTDPVLSQSIPDTH
VKNESVVEVAKTRKQMREERAQRLAAEQAQWVRQKFSLANSEQLLASFSA
ALVKHIMLQGRIHITTTSLCFYAKIFGKVTKECYPFSSMARVKKRRGGFV
ANAIKIYFQDQTIQPVVIGSLNHRERAFETIQTRLREINPTAAEPTDADE
YGSSHSIGNSHAGDSEDQSFDDDESNSNELQSTTRTSRDDTQSPRAVSKS
VPTTPNFGAQLAASDSSDAESGREVETAPPRSSPASENNLVWRTQHDVVD
RVFGKTFEKKTERARGVLNASVMEVFNIIFVSDWLKHYHEASNNKEVTFT
EWARDEEGFMLREVNFQKPLGYKIGPKETRVKEKQRYSFTGHGGVVFELE
GHNLDVLYGDYFVCESFFELIPQGDGSRTLMILSISVHFVKSTMLRGKIE
AGALSETKVAFQRLYDLASRKVDEHVSSKGRRPQSRKRQENKKISKSKEA
IQKKASLPVPSPLDIGESARTTFRNDTKSALDNMQLSNSVRVEVKDSEST
KWLRIGALIALGAVCLLLMVVMMLLFRMRRDVAMLEKLIADAGMATKCEA
IAEA*

spliced messenger RNA

>Ggra5170.t1 ID=Ggra5170.t1|Name=Ggra5170.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1815bp|location=Sequence derived from alignment at tig00000069_pilon:664424..666238- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGTACCCTCGGCAGAGCAGTCGCAAGATGCGCAACCGGACTTGTT
TCCGGCTTCTTCCATTTACGTTTCCACTGCCGCTCATGACAATACTATCT
CTCAGACAACCACCGACCCAGTTTTGTCGCAGAGCATTCCCGACACCCAC
GTGAAGAACGAGTCCGTTGTCGAGGTCGCCAAGACTAGAAAGCAAATGCG
CGAAGAAAGAGCCCAACGACTCGCAGCCGAGCAAGCTCAATGGGTTCGTC
AAAAGTTCTCGCTCGCCAACTCCGAGCAGCTCCTCGCATCATTTTCAGCC
GCGCTGGTCAAGCACATCATGCTTCAAGGTCGCATCCATATCACCACCAC
CTCTCTTTGCTTCTACGCAAAGATTTTCGGTAAGGTCACCAAGGAGTGCT
ATCCCTTTTCTTCCATGGCCAGGGTCAAGAAGCGACGCGGTGGTTTTGTC
GCCAATGCTATCAAGATTTATTTCCAGGACCAAACCATTCAGCCTGTTGT
TATCGGTTCTCTCAATCATCGCGAGCGAGCGTTTGAAACCATTCAGACCC
GTTTGCGAGAAATCAACCCCACTGCCGCGGAGCCTACTGACGCGGATGAG
TATGGTTCAAGCCATTCCATTGGCAATTCCCATGCAGGCGACTCGGAAGA
CCAATCGTTTGACGACGATGAGTCAAATTCCAACGAACTGCAATCTACCA
CGCGAACTTCACGCGATGACACACAATCACCACGCGCGGTGTCAAAGTCG
GTTCCCACCACCCCCAATTTTGGAGCACAACTTGCGGCATCCGACTCGAG
TGATGCTGAGTCTGGGAGAGAGGTGGAAACCGCGCCCCCACGTTCATCCC
CGGCTTCGGAGAATAATCTTGTTTGGAGAACTCAACATGATGTTGTTGAC
CGCGTCTTTGGAAAGACATTCGAGAAGAAAACCGAACGCGCCAGAGGCGT
GTTGAACGCTTCTGTCATGGAGGTGTTCAACATCATTTTTGTAAGCGACT
GGCTTAAACACTATCACGAAGCGAGCAACAACAAAGAAGTAACTTTCACC
GAATGGGCACGAGATGAGGAAGGGTTCATGTTGCGCGAGGTGAATTTCCA
AAAACCGTTGGGCTACAAGATTGGACCCAAAGAAACCCGTGTGAAGGAGA
AACAGCGTTACTCGTTCACGGGACACGGTGGTGTTGTCTTCGAATTGGAG
GGACACAATCTAGATGTTCTATATGGAGACTATTTTGTATGTGAGTCTTT
CTTTGAACTGATTCCTCAGGGTGATGGCTCCAGAACTTTGATGATCTTAA
GCATATCGGTACACTTTGTTAAGAGCACGATGCTGAGAGGCAAGATTGAA
GCAGGAGCGCTGTCCGAGACTAAGGTTGCTTTCCAAAGACTATATGACCT
GGCGAGCCGAAAGGTGGACGAACATGTATCATCGAAGGGCAGGCGACCGC
AGTCAAGAAAGAGGCAGGAGAACAAGAAAATTTCGAAGAGCAAAGAAGCA
ATTCAGAAGAAAGCTTCTCTGCCCGTGCCCTCGCCGCTGGATATTGGTGA
AAGTGCCAGAACCACGTTTAGAAACGATACTAAATCTGCGCTCGACAACA
TGCAATTGAGCAACTCGGTTAGAGTCGAGGTTAAGGATTCTGAGTCAACC
AAGTGGCTACGGATTGGTGCGCTGATAGCACTTGGTGCGGTTTGCCTGTT
GTTGATGGTTGTGATGATGTTATTGTTCCGCATGAGACGCGATGTGGCAA
TGCTGGAGAAGCTAATTGCAGATGCGGGGATGGCCACGAAATGTGAAGCA
ATCGCAGAGGCTTGA

protein sequence of Ggra5170.t1

>Ggra5170.t1 ID=Ggra5170.t1|Name=Ggra5170.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=605bp
MTVPSAEQSQDAQPDLFPASSIYVSTAAHDNTISQTTTDPVLSQSIPDTH
VKNESVVEVAKTRKQMREERAQRLAAEQAQWVRQKFSLANSEQLLASFSA
ALVKHIMLQGRIHITTTSLCFYAKIFGKVTKECYPFSSMARVKKRRGGFV
ANAIKIYFQDQTIQPVVIGSLNHRERAFETIQTRLREINPTAAEPTDADE
YGSSHSIGNSHAGDSEDQSFDDDESNSNELQSTTRTSRDDTQSPRAVSKS
VPTTPNFGAQLAASDSSDAESGREVETAPPRSSPASENNLVWRTQHDVVD
RVFGKTFEKKTERARGVLNASVMEVFNIIFVSDWLKHYHEASNNKEVTFT
EWARDEEGFMLREVNFQKPLGYKIGPKETRVKEKQRYSFTGHGGVVFELE
GHNLDVLYGDYFVCESFFELIPQGDGSRTLMILSISVHFVKSTMLRGKIE
AGALSETKVAFQRLYDLASRKVDEHVSSKGRRPQSRKRQENKKISKSKEA
IQKKASLPVPSPLDIGESARTTFRNDTKSALDNMQLSNSVRVEVKDSEST
KWLRIGALIALGAVCLLLMVVMMLLFRMRRDVAMLEKLIADAGMATKCEA
IAEA*

mRNA from alignment at tig00000069_pilon:664424..666238-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra5170.t1 ID=Ggra5170.t1|Name=Ggra5170.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1815bp|location=Sequence derived from alignment at tig00000069_pilon:664424..666238- (Gracilaria gracilis GNS1m male)
ATGACTGTACCCTCGGCAGAGCAGTCGCAAGATGCGCAACCGGACTTGTT
TCCGGCTTCTTCCATTTACGTTTCCACTGCCGCTCATGACAATACTATCT
CTCAGACAACCACCGACCCAGTTTTGTCGCAGAGCATTCCCGACACCCAC
GTGAAGAACGAGTCCGTTGTCGAGGTCGCCAAGACTAGAAAGCAAATGCG
CGAAGAAAGAGCCCAACGACTCGCAGCCGAGCAAGCTCAATGGGTTCGTC
AAAAGTTCTCGCTCGCCAACTCCGAGCAGCTCCTCGCATCATTTTCAGCC
GCGCTGGTCAAGCACATCATGCTTCAAGGTCGCATCCATATCACCACCAC
CTCTCTTTGCTTCTACGCAAAGATTTTCGGTAAGGTCACCAAGGAGTGCT
ATCCCTTTTCTTCCATGGCCAGGGTCAAGAAGCGACGCGGTGGTTTTGTC
GCCAATGCTATCAAGATTTATTTCCAGGACCAAACCATTCAGCCTGTTGT
TATCGGTTCTCTCAATCATCGCGAGCGAGCGTTTGAAACCATTCAGACCC
GTTTGCGAGAAATCAACCCCACTGCCGCGGAGCCTACTGACGCGGATGAG
TATGGTTCAAGCCATTCCATTGGCAATTCCCATGCAGGCGACTCGGAAGA
CCAATCGTTTGACGACGATGAGTCAAATTCCAACGAACTGCAATCTACCA
CGCGAACTTCACGCGATGACACACAATCACCACGCGCGGTGTCAAAGTCG
GTTCCCACCACCCCCAATTTTGGAGCACAACTTGCGGCATCCGACTCGAG
TGATGCTGAGTCTGGGAGAGAGGTGGAAACCGCGCCCCCACGTTCATCCC
CGGCTTCGGAGAATAATCTTGTTTGGAGAACTCAACATGATGTTGTTGAC
CGCGTCTTTGGAAAGACATTCGAGAAGAAAACCGAACGCGCCAGAGGCGT
GTTGAACGCTTCTGTCATGGAGGTGTTCAACATCATTTTTGTAAGCGACT
GGCTTAAACACTATCACGAAGCGAGCAACAACAAAGAAGTAACTTTCACC
GAATGGGCACGAGATGAGGAAGGGTTCATGTTGCGCGAGGTGAATTTCCA
AAAACCGTTGGGCTACAAGATTGGACCCAAAGAAACCCGTGTGAAGGAGA
AACAGCGTTACTCGTTCACGGGACACGGTGGTGTTGTCTTCGAATTGGAG
GGACACAATCTAGATGTTCTATATGGAGACTATTTTGTATGTGAGTCTTT
CTTTGAACTGATTCCTCAGGGTGATGGCTCCAGAACTTTGATGATCTTAA
GCATATCGGTACACTTTGTTAAGAGCACGATGCTGAGAGGCAAGATTGAA
GCAGGAGCGCTGTCCGAGACTAAGGTTGCTTTCCAAAGACTATATGACCT
GGCGAGCCGAAAGGTGGACGAACATGTATCATCGAAGGGCAGGCGACCGC
AGTCAAGAAAGAGGCAGGAGAACAAGAAAATTTCGAAGAGCAAAGAAGCA
ATTCAGAAGAAAGCTTCTCTGCCCGTGCCCTCGCCGCTGGATATTGGTGA
AAGTGCCAGAACCACGTTTAGAAACGATACTAAATCTGCGCTCGACAACA
TGCAATTGAGCAACTCGGTTAGAGTCGAGGTTAAGGATTCTGAGTCAACC
AAGTGGCTACGGATTGGTGCGCTGATAGCACTTGGTGCGGTTTGCCTGTT
GTTGATGGTTGTGATGATGTTATTGTTCCGCATGAGACGCGATGTGGCAA
TGCTGGAGAAGCTAATTGCAGATGCGGGGATGGCCACGAAATGTGAAGCA
ATCGCAGAGGCTTGA

Coding sequence (CDS) from alignment at tig00000069_pilon:664424..666238-

>Ggra5170.t1 ID=Ggra5170.t1|Name=Ggra5170.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1815bp|location=Sequence derived from alignment at tig00000069_pilon:664424..666238- (Gracilaria gracilis GNS1m male)
ATGACTGTACCCTCGGCAGAGCAGTCGCAAGATGCGCAACCGGACTTGTT
TCCGGCTTCTTCCATTTACGTTTCCACTGCCGCTCATGACAATACTATCT
CTCAGACAACCACCGACCCAGTTTTGTCGCAGAGCATTCCCGACACCCAC
GTGAAGAACGAGTCCGTTGTCGAGGTCGCCAAGACTAGAAAGCAAATGCG
CGAAGAAAGAGCCCAACGACTCGCAGCCGAGCAAGCTCAATGGGTTCGTC
AAAAGTTCTCGCTCGCCAACTCCGAGCAGCTCCTCGCATCATTTTCAGCC
GCGCTGGTCAAGCACATCATGCTTCAAGGTCGCATCCATATCACCACCAC
CTCTCTTTGCTTCTACGCAAAGATTTTCGGTAAGGTCACCAAGGAGTGCT
ATCCCTTTTCTTCCATGGCCAGGGTCAAGAAGCGACGCGGTGGTTTTGTC
GCCAATGCTATCAAGATTTATTTCCAGGACCAAACCATTCAGCCTGTTGT
TATCGGTTCTCTCAATCATCGCGAGCGAGCGTTTGAAACCATTCAGACCC
GTTTGCGAGAAATCAACCCCACTGCCGCGGAGCCTACTGACGCGGATGAG
TATGGTTCAAGCCATTCCATTGGCAATTCCCATGCAGGCGACTCGGAAGA
CCAATCGTTTGACGACGATGAGTCAAATTCCAACGAACTGCAATCTACCA
CGCGAACTTCACGCGATGACACACAATCACCACGCGCGGTGTCAAAGTCG
GTTCCCACCACCCCCAATTTTGGAGCACAACTTGCGGCATCCGACTCGAG
TGATGCTGAGTCTGGGAGAGAGGTGGAAACCGCGCCCCCACGTTCATCCC
CGGCTTCGGAGAATAATCTTGTTTGGAGAACTCAACATGATGTTGTTGAC
CGCGTCTTTGGAAAGACATTCGAGAAGAAAACCGAACGCGCCAGAGGCGT
GTTGAACGCTTCTGTCATGGAGGTGTTCAACATCATTTTTGTAAGCGACT
GGCTTAAACACTATCACGAAGCGAGCAACAACAAAGAAGTAACTTTCACC
GAATGGGCACGAGATGAGGAAGGGTTCATGTTGCGCGAGGTGAATTTCCA
AAAACCGTTGGGCTACAAGATTGGACCCAAAGAAACCCGTGTGAAGGAGA
AACAGCGTTACTCGTTCACGGGACACGGTGGTGTTGTCTTCGAATTGGAG
GGACACAATCTAGATGTTCTATATGGAGACTATTTTGTATGTGAGTCTTT
CTTTGAACTGATTCCTCAGGGTGATGGCTCCAGAACTTTGATGATCTTAA
GCATATCGGTACACTTTGTTAAGAGCACGATGCTGAGAGGCAAGATTGAA
GCAGGAGCGCTGTCCGAGACTAAGGTTGCTTTCCAAAGACTATATGACCT
GGCGAGCCGAAAGGTGGACGAACATGTATCATCGAAGGGCAGGCGACCGC
AGTCAAGAAAGAGGCAGGAGAACAAGAAAATTTCGAAGAGCAAAGAAGCA
ATTCAGAAGAAAGCTTCTCTGCCCGTGCCCTCGCCGCTGGATATTGGTGA
AAGTGCCAGAACCACGTTTAGAAACGATACTAAATCTGCGCTCGACAACA
TGCAATTGAGCAACTCGGTTAGAGTCGAGGTTAAGGATTCTGAGTCAACC
AAGTGGCTACGGATTGGTGCGCTGATAGCACTTGGTGCGGTTTGCCTGTT
GTTGATGGTTGTGATGATGTTATTGTTCCGCATGAGACGCGATGTGGCAA
TGCTGGAGAAGCTAATTGCAGATGCGGGGATGGCCACGAAATGTGAAGCA
ATCGCAGAGGCTTGA