Ggra5125.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra5125.t1
Unique NameGgra5125.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length304
Homology
BLAST of Ggra5125.t1 vs. uniprot
Match: A0A2V3J9E0 (Katanin p80 WD40 repeat-containing subunit B1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J9E0_9FLOR)

HSP 1 Score: 576 bits (1485), Expect = 2.490e-207
Identity = 279/303 (92.08%), Postives = 295/303 (97.36%), Query Frame = 0
Query:    1 MTSQITVKKRWQLSRYVDAVVSAGGGNAVAATSMLTGSVWDGRVHGLMGAGQIEAEIEVETGIADLCCLDEGQFIAGADDGSVRVVHSGGVLPLPGGHNSSVNSVAVSSSKKLVASGGRDRAVLCWNLNEPSNEPMRFEGHIDSVNSVDWNTAGDNLLTASSDGMACVWDERQNHWQAAVTIPTGLHVYSAVFAAAGSVLVMSTEMMEVMAFDLRAETKVLWREGGYTGVSHCLRASPHNQKVVAVASNCPAVTLLDVSNGNVLGKSFHHSDYVRSVAWDSQAEGRLFSGSWDKSVAELNVAL 303
            MTS+ITVKKRWQLSRYVDAVVSAGGGNAVAATS +TG VWDG VHGLMGAGQIEAEIEVETGIADLCCLDEGQFIAGADDGSVRVVHSGGVLPLPGGHNS+VNSVAVSSSKKLVASGG+D+AVLCWNLNEPSNEPMRFEGHIDSVNSVDWNT GDNLLTASSDGMACVWDERQNHWQAA+TIPTGL VYSAVFAA+G+ +VMSTEMM+V+AFDLRAETK LWR+GGYTG SHCLRASPHN+K+VAVASNCPAVTLLDVSNGNVLGKSFHH+DYVRSVAWDSQAEGRLFSGSWDKSVAELNV+L
Sbjct:    1 MTSKITVKKRWQLSRYVDAVVSAGGGNAVAATSQITGIVWDGCVHGLMGAGQIEAEIEVETGIADLCCLDEGQFIAGADDGSVRVVHSGGVLPLPGGHNSNVNSVAVSSSKKLVASGGQDKAVLCWNLNEPSNEPMRFEGHIDSVNSVDWNTTGDNLLTASSDGMACVWDERQNHWQAAITIPTGLDVYSAVFAASGTTMVMSTEMMDVVAFDLRAETKALWRKGGYTGASHCLRASPHNEKIVAVASNCPAVTLLDVSNGNVLGKSFHHTDYVRSVAWDSQAEGRLFSGSWDKSVAELNVSL 303          
BLAST of Ggra5125.t1 vs. uniprot
Match: A0A7S0ZGB4 (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZGB4_9RHOD)

HSP 1 Score: 295 bits (755), Expect = 2.130e-96
Identity = 145/296 (48.99%), Postives = 204/296 (68.92%), Query Frame = 0
Query:    5 ITVKKRWQLSRYVDAVVSAGGGNAVAATSMLTGSVWDGRVHGLMGAGQIEAEIEVETGIADLCCLDEGQFIAGADDGSVRVVHSGGVLPLPGGHNSSVNSVAVSSSKKLVASGGRDRAVLCWNLNEPSNEPMRFEGHIDSVNSVDWNTAGDNLLTASSDGMACVWDERQNH-WQAAVTIPTGLHVYSAVFAAAGSVLVMSTEMMEVMAFDLRAETKVLWREGGYTGVSHCLRASPHNQKVVAVASNCPAVTLLDVSNGNVLGKSFHHSDYVRSVAWDSQAEGRLFSGSWDKSVAEL 299
            ++V++ W++ R VDAVV+AGGGN VAATS LTGS+WDGRV GL G+G +EAEI VE G+ADLC + EGQ++A  DDG VR +HSGG + L GGHNS VNSV+++ +    A+ G DR +  ++L + S EP RFE H DSVNSVDW+  G+ LL+ASSDG  CVWD R     Q+++ +  G   Y AVF+  G  +++ TE  E++ +D+R+  + LW E G  G    L+ SPHN   VA  ++ P+V +++V +G +    +HH D+VR+++WD Q  GRL++GSWDK+V EL
Sbjct:    1 MSVQQEWKVKRCVDAVVAAGGGNVVAATSNLTGSIWDGRVFGLTGSGLVEAEILVECGMADLCAIGEGQYLAACDDGMVRAIHSGGAMVLGGGHNSVVNSVSITGTTG--ATAGADRVIQFYDLEKHSTEPTRFEAHADSVNSVDWS-GGNKLLSASSDGTVCVWDARNRPICQSSLAVHVGSVAYVAVFSMNGDRVLIGTEKNELLCYDIRSTMQPLWSEIGLKGPVRNLKQSPHNASQVAAGTDAPSVLIINVESGKIERTMYHHRDFVRALSWDKQVPGRLYTGSWDKTVVEL 293          
BLAST of Ggra5125.t1 vs. uniprot
Match: A0A5J4Z1R0 (Peroxisomal targeting signal 2 receptor n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z1R0_PORPP)

HSP 1 Score: 243 bits (621), Expect = 4.870e-76
Identity = 142/301 (47.18%), Postives = 182/301 (60.47%), Query Frame = 0
Query:    9 KRWQLSRYVDAVVSAGGG-NAVAATSMLTGSVWDGRVHGL-MGAGQIEAEIEVETGIADLCCLDEGQFIAGADDGSVRVVHSGGVLPLPGGHNSSVNSVAVSSSKKLVASGGRDRAVLCWNLNEPSN----EPMRFEGHIDSVNSVDWNTAGDNLLTASSDGMACVWDERQ-NHWQAAVTIPTGLHVYSAVFAAAGSVLVMSTEMMEVMAFDLRA-ETKVLWREGGYTGVSHCLRASPHNQKVVAVASNCPAVTLLDVSNGNVLGKSFHHSDYVRSVAWDSQAEGRLFSGSWDKSVAELNV 301
            K W+LS  VDAV +AG G N V ATS LTGSVW+G+V+G+ +GA Q  AEI +E  +ADLC + EGQF+AG DDG VR+VH G  +PL G HN  V +VA S      AS G DR VL  +L         E  R   H  +VNSVDW+  G  LLTAS DG   VWD R   + +   +   G   Y AVF   G  +V  TE  E++AFDLRA  T  LW E G+ G    ++A PHN  +VAVA++ P+V  + +  G V  + F+H D+VR++AWD    GRLFSGSWD++V E+ V
Sbjct:    5 KEWRLSMAVDAVAAAGDGKNIVVATSNLTGSVWEGKVYGIGLGASQPLAEIPIECSLADLCPIREGQFLAGCDDGYVRIVHEGAPIPLLGAHNGPVTAVATSGDT--AASAGTDRMVLLHDLVRLMELNGIEATRLTAHTSAVNSVDWS--GPMLLTASGDGTVRVWDTRNLANAKPTYSAAVGSMAYCAVFCRNGERIVAGTEAHELVAFDLRAGATTALWTEDGFRGPVRKIKACPHNPGLVAVATDTPSVATVLIDTGKVDKQIFNHRDFVRALAWDETTPGRLFSGSWDRTVCEIKV 301          
BLAST of Ggra5125.t1 vs. uniprot
Match: A0A6T6DDA3 (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A6T6DDA3_9RHOD)

HSP 1 Score: 241 bits (615), Expect = 8.560e-76
Identity = 119/253 (47.04%), Postives = 164/253 (64.82%), Query Frame = 0
Query:   48 MGAGQIEAEIEVETGIADLCCLDEGQFIAGADDGSVRVVHSGGVLPLPGGHNSSVNSVAVSSSKKLVASGGRDRAVLCWNLNEPSNEPMRFEGHIDSVNSVDWNTAGDNLLTASSDGMACVWDERQNHWQAAVTIPTGLHVYSAVFAAAGSVLVMSTEMMEVMAFDLRAETKV-LWREGGYTGVSHCLRASPHNQKVVAVASNCPAVTLLDVSNGNVLGKSF-HHSDYVRSVAWDSQAEGRLFSGSWDKSVAE 298
            M  G+IEAEIEV+ G+ADLC L+EGQF+A  DDG+VRV+HSGGVLPLP  H+    +VAVS  +K+VASGG D  +LCW+L+EP+N+P R EGH D V +VDW+  G+ LL++S DG  CVWD R   WQ    +  G    +A F   G  +++ TE +E+   DLR +    +WRE     V   +R  PHN  + A++ + PAV +L V NG+   K    H+D++R ++WD Q  G+L +GSWDK+V E
Sbjct:    1 MATGEIEAEIEVDCGVADLCGLEEGQFVAACDDGTVRVIHSGGVLPLPSCHDDMTITVAVSPERKMVASGGADGVILCWDLHEPANDPYRQEGHKDGVTAVDWS--GNILLSSSKDGRICVWDARNKPWQPVARVKVGSMALTAAFCRNGERILVGTENLEIHGHDLRGQAMTPMWREKVKAPVRK-IRPCPHNSNICAISMDLPAVHILQVDNGDEFDKPILGHTDFIRGLSWDPQYAGKLLTGSWDKTVKE 250          
BLAST of Ggra5125.t1 vs. uniprot
Match: A0A1X6NVM9 (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NVM9_PORUM)

HSP 1 Score: 208 bits (529), Expect = 3.740e-61
Identity = 141/379 (37.20%), Postives = 191/379 (50.40%), Query Frame = 0
Query:    6 TVKKRWQLSRYVDAVVSAGGGNAVAATSMLTGSVWDGRVHGLMGAGQIEAEIEVETGIADLCCLDEGQFIAGADDGSVRVVHSGGVLPLPGGHN--SSVNSVAVSSSK-------------------------------KLVASGGRDRAVLCWNLNEPSNEPMRFEGHIDSVNSVDWN-------TAGDNLLTASSDGMACVWDERQNHWQAA---------------------------------------------------VTIP-TGLHVYSAVFAAAGSVLVMSTEMMEVMAFDLRAETK-VLW-REGGYTGVSHCLRASPHNQKVVAVASNCPAVTLLDVSNGNVLGKSFHHSDYVRSVAWDSQAEGRLFSG 290
            TV   W+L R+VDAV+ AG GNAVAATS LTG+VWDGRV GL+  GQ EA++EVE G++ L  L EGQFIAG DDG VRVVHSGG+LPLPGGH+  SS+   A+SSS                                + VASGG D   L W++  P+  P R  GH  +V +VD+        + G  LLTAS DG A VWD+R     AA                                                   + +P TG  V +A +A  G+ ++++T+  +V  +D+RA ++  +W  +  +  V      +     VVA  S+CPAVT+L + +G++ G+SFHH+D+VR VAWD       F G
Sbjct:   10 TVGTVWRLDRHVDAVIYAGDGNAVAATSSLTGAVWDGRVIGLIRGGQTEAQLEVEVGLSSLATLAEGQFIAGGDDGVVRVVHSGGILPLPGGHDGGSSICVAALSSSPLTSPGGDAXXXXXXXXXXXXXXXXXXDAGTVQRVASGGSDGVALVWDVASPAAAPSRIIGHSCAVTAVDFPPPSSLVASRGGGLLTASQDGRAAVWDDRFGASDAAGGGGDSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATPASASRLPAMVLPLTGDAVTAAAYAPDGTGVLVATDRCDVALWDVRAASRGAVWVTDAFWRPVRAIAPTAAVGGGVVACGSDCPAVTVLQLGDGSLGGRSFHHADFVRGVAWDKTVAELQFEG 388          
BLAST of Ggra5125.t1 vs. uniprot
Match: A0A1B6DLS7 (Uncharacterized protein n=2 Tax=Clastoptera arizonana TaxID=38151 RepID=A0A1B6DLS7_9HEMI)

HSP 1 Score: 70.1 bits (170), Expect = 4.990e-10
Identity = 73/259 (28.19%), Postives = 111/259 (42.86%), Query Frame = 0
Query:   58 EVETGIADLCCLDEGQ-FIAGADDGSVRVV--------HSGGVLP--LPGGHNSSVNSVAVSSSKKLVASGGRDRAVLCWNLNEPSNEPMRFEGHIDSVNSVDWNTAGDNLLTASS--DGMACVWDERQNHWQAAVTIPTGLHVYSAVF--AAAGSVLVMSTEMMEVMAFDLRAETKVLWREGGYTGVSHCLRASPHNQKVVAVASNCPAVTLLDVSNGNVLGKSFHHSDYVRSVAWDSQAEGRLFSGSWDKSVAELNV 301
            + +T ++D   LD  Q  I G D G+V V         HS  ++       H+++V ++AVSS KK VASGG D  +  WN  +   +      H   V ++ +     N   ASS  DG   +WD RQ    A V   T     SA+   +   +VL + + +  +   DLR  + V+     +    H L     N       S+   V        N++     H+D+VR +AW  + +  LFS  WDK V + NV
Sbjct:   73 DCKTSVSDGKFLDSKQKIIVGEDSGAVTVYTLTELEDDHSFHLVSESTRNDHDNTVLTIAVSSDKKQVASGGMDLCIKIWNTEDLLIKNNYQLAHCHHVTNLAFRPQDSNYTFASSSLDGTVLLWDSRQFE-PATVLRDTPNEGLSALAWNSVDDNVLAVGSVIGNIDLIDLRTVSNVM-ESRPFNRAIHKLLYINSNSLAAVAESHEVKVVQHSSDKLNIVYNDERHNDFVRGLAWHPKMKC-LFSCGWDKQVIKHNV 328          
BLAST of Ggra5125.t1 vs. uniprot
Match: telomerase protein component 1 n=1 Tax=Nanorana parkeri TaxID=125878 RepID=UPI000854A1BC (telomerase protein component 1 n=1 Tax=Nanorana parkeri TaxID=125878 RepID=UPI000854A1BC)

HSP 1 Score: 58.5 bits (140), Expect = 7.880e-6
Identity = 29/76 (38.16%), Postives = 43/76 (56.58%), Query Frame = 0
Query:   97 GHNSSVNSVAVSSSKKLVASGGRDRAVLCWNL--NEPSNEPMRFEGHIDSVNSVDWNTAGDNLLTASSDGMACVWD 170
            GH ++V   + SS  +L+A+GG+DR+VLCW++  N P         H D V    W  +G  L++ S DG  C+WD
Sbjct: 1982 GHTAAVTCCSFSSDGRLLATGGQDRSVLCWDVSVNPPILSCTLLSCHKDWVTGCSWTDSG-MLISGSGDGALCLWD 2056          
The following BLAST results are available for this feature:
BLAST of Ggra5125.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A2V3J9E02.490e-20792.08Katanin p80 WD40 repeat-containing subunit B1 n=1 ... [more]
A0A7S0ZGB42.130e-9648.99Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A5J4Z1R04.870e-7647.18Peroxisomal targeting signal 2 receptor n=1 Tax=Po... [more]
A0A6T6DDA38.560e-7647.04Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A1X6NVM93.740e-6137.20Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A1B6DLS74.990e-1028.19Uncharacterized protein n=2 Tax=Clastoptera arizon... [more]
telomerase protein component 1 n=1 Tax=Nanorana parkeri TaxID=125878 RepID=UPI000854A1BC7.880e-638.16telomerase protein component 1 n=1 Tax=Nanorana pa... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 131..170
e-value: 3.4E-7
score: 39.9
coord: 50..87
e-value: 25.0
score: 8.2
coord: 261..300
e-value: 0.25
score: 20.4
coord: 88..127
e-value: 0.0011
score: 28.3
IPR001680WD40 repeatPFAMPF00400WD40coord: 96..127
e-value: 2.1E-5
score: 25.2
coord: 138..170
e-value: 1.5E-4
score: 22.4
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 138..170
score: 13.11507
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 95..136
score: 11.64467
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 10..302
e-value: 2.0E-46
score: 160.3
NoneNo IPR availablePANTHERPTHR46853METHYLOSOME PROTEIN 50coord: 12..299
NoneNo IPR availablePROSITEPS50294WD_REPEATS_REGIONcoord: 138..170
score: 10.891048
NoneNo IPR availablePROSITEPS50294WD_REPEATS_REGIONcoord: 95..129
score: 9.678328
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 62..297

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:529675..530586 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5125.t1Ggra5125.t1Gracilaria gracilis GNS1m malemRNAtig00000069_pilon 529675..530586 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra5125.t1 ID=Ggra5125.t1|Name=Ggra5125.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=304bp
MTSQITVKKRWQLSRYVDAVVSAGGGNAVAATSMLTGSVWDGRVHGLMGA
GQIEAEIEVETGIADLCCLDEGQFIAGADDGSVRVVHSGGVLPLPGGHNS
SVNSVAVSSSKKLVASGGRDRAVLCWNLNEPSNEPMRFEGHIDSVNSVDW
NTAGDNLLTASSDGMACVWDERQNHWQAAVTIPTGLHVYSAVFAAAGSVL
VMSTEMMEVMAFDLRAETKVLWREGGYTGVSHCLRASPHNQKVVAVASNC
PAVTLLDVSNGNVLGKSFHHSDYVRSVAWDSQAEGRLFSGSWDKSVAELN
VAL*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR036322WD40_repeat_dom_sf