Ggra5146.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5146.t1
Unique NameGgra5146.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length345
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:595052..596086 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog378806.STAUR_2848
PFAMsMethyltrans_RNA
Max annot lvl28221|Deltaproteobacteria
Evalue2.26e-11
EggNOG OGsCOG1385@1|root,COG1385@2|Bacteria,1MZBG@1224|Proteobacteria,42UAY@68525|delta/epsilon subdivisions,2X5BX@28221|Deltaproteobacteria,2YV3H@29|Myxococcales
DescriptionSpecifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit
COG categoryJ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5146Ggra5146Gracilaria gracilis GNS1m malegenetig00000069_pilon 595052..596086 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5146.t1.start1Ggra5146.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000069_pilon 595052..595054 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5146.t1.CDS1Ggra5146.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000069_pilon 595052..596086 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5146.t1.exon1Ggra5146.t1.exon1Gracilaria gracilis GNS1m maleexontig00000069_pilon 595052..596086 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5146.t1.stop1Ggra5146.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000069_pilon 596084..596086 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5146.t1Ggra5146.t1Gracilaria gracilis GNS1m malepolypeptidetig00000069_pilon 595052..596086 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5146.t1 ID=Ggra5146.t1|Name=Ggra5146.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=345bp
MGLGALNRVLLTARDLQRDGTAYLRSDDARARHIRALLSGGQSQCRLRVA
VEDGYLHDDALCELQRDGGYTLRMCERGRRQRDGAARVTLLLAMQRPKAT
ARILRAVAGVGVRRVVLVHAAKTERTYWQSRLLRPAPACDAEAPQPQRGD
TQQPQPQPQPQPQPQPQPQPQPQQQQQQQSDDDDADVRDVSEAPQVRRLL
IEGVQQGAHDASVPQVVVDRRALQQVAAHYGGATTTALFAHPRGGGEEEE
VEEEEEEDDDDAAQSVVAAVARGAGEVVLAIGPEGGWSDDEVARFRRDGF
RHVRFGERVLRSETAVVVAMALVHEGLRWRRSRWTVLTDGADAP*
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spliced messenger RNA

>Ggra5146.t1 ID=Ggra5146.t1|Name=Ggra5146.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1035bp|location=Sequence derived from alignment at tig00000069_pilon:595052..596086+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCCTGGGCGCTCTCAACCGCGTGCTGCTGACGGCGCGCGATCTGCA
GCGCGACGGCACGGCGTATCTGCGGAGCGACGACGCGCGCGCGCGGCACA
TCCGCGCGCTGCTGAGCGGCGGGCAGTCGCAATGTCGGCTGCGCGTGGCC
GTGGAGGACGGCTACCTGCACGACGACGCGCTGTGCGAGCTGCAGCGCGA
CGGCGGCTACACGCTGCGCATGTGCGAGCGCGGCCGACGCCAGCGCGATG
GCGCCGCGCGCGTGACGCTGCTGCTCGCCATGCAGCGACCCAAGGCGACG
GCGCGCATCCTGCGCGCCGTGGCTGGCGTGGGCGTAAGACGCGTGGTGCT
GGTGCATGCCGCCAAGACCGAGCGCACGTACTggcagagccggctgctgc
ggccggcgccggcgtgcgacgcggaggcgccgcagccgcagcggggcgAC
ACGCAgcagccacagccgcagccgcagccgcagccgcagccgcagccgca
gccgcagccgcagccgcagcagcagcagcagcagcagAGCGACGACGACG
ACGCAGACGTGCGCGACGTGAGTGAGGCGCCTCAGGTCCGACGGCTGTTG
ATCGAGGGCGTGCAGCAGGGCGCGCACGACGCGAGCGTACCGCAGGTAGT
AGTGGACCGGCGCGCGCTGCAGCAAGTGGCGGCGCACTACGGCGGCGCGA
CGACGACGGCGCTGTTCGCGCACCCGCGCGGCGGCGGggaggaggaggag
gtggaggaggaggaggaggaggaCGACGACGACgcggcgcagtcggtggt
ggcggcggtggcgcgcggcgcgggcgAGGTGGTGCTGGCCATCGGGCCGG
AGGGCGGGTGGAGCGACGACGAGGTGGCGCGCTTTCGGCGCGACGGCTTC
CGCCACGTGCGCTTTGGCGAGCGCGTGCTGCGCTCCGAGACGGCCGTGGT
GGTGGCCATGGCGCTGGTGCACGAGGGGCTGCGGTGGCGCCGCAGCCGGT
GGACGGTGCTCACTGATGGCGCCGATGCGCCTTGA
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protein sequence of Ggra5146.t1

>Ggra5146.t1 ID=Ggra5146.t1|Name=Ggra5146.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=345bp
MGLGALNRVLLTARDLQRDGTAYLRSDDARARHIRALLSGGQSQCRLRVA
VEDGYLHDDALCELQRDGGYTLRMCERGRRQRDGAARVTLLLAMQRPKAT
ARILRAVAGVGVRRVVLVHAAKTERTYWQSRLLRPAPACDAEAPQPQRGD
TQQPQPQPQPQPQPQPQPQPQPQQQQQQQSDDDDADVRDVSEAPQVRRLL
IEGVQQGAHDASVPQVVVDRRALQQVAAHYGGATTTALFAHPRGGGEEEE
VEEEEEEDDDDAAQSVVAAVARGAGEVVLAIGPEGGWSDDEVARFRRDGF
RHVRFGERVLRSETAVVVAMALVHEGLRWRRSRWTVLTDGADAP*
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mRNA from alignment at tig00000069_pilon:595052..596086+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5146.t1 ID=Ggra5146.t1|Name=Ggra5146.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1035bp|location=Sequence derived from alignment at tig00000069_pilon:595052..596086+ (Gracilaria gracilis GNS1m male)
ATGGGCCTGGGCGCTCTCAACCGCGTGCTGCTGACGGCGCGCGATCTGCA
GCGCGACGGCACGGCGTATCTGCGGAGCGACGACGCGCGCGCGCGGCACA
TCCGCGCGCTGCTGAGCGGCGGGCAGTCGCAATGTCGGCTGCGCGTGGCC
GTGGAGGACGGCTACCTGCACGACGACGCGCTGTGCGAGCTGCAGCGCGA
CGGCGGCTACACGCTGCGCATGTGCGAGCGCGGCCGACGCCAGCGCGATG
GCGCCGCGCGCGTGACGCTGCTGCTCGCCATGCAGCGACCCAAGGCGACG
GCGCGCATCCTGCGCGCCGTGGCTGGCGTGGGCGTAAGACGCGTGGTGCT
GGTGCATGCCGCCAAGACCGAGCGCACGTACTggcagagccggctgctgc
ggccggcgccggcgtgcgacgcggaggcgccgcagccgcagcggggcgAC
ACGCAgcagccacagccgcagccgcagccgcagccgcagccgcagccgca
gccgcagccgcagccgcagcagcagcagcagcagcagAGCGACGACGACG
ACGCAGACGTGCGCGACGTGAGTGAGGCGCCTCAGGTCCGACGGCTGTTG
ATCGAGGGCGTGCAGCAGGGCGCGCACGACGCGAGCGTACCGCAGGTAGT
AGTGGACCGGCGCGCGCTGCAGCAAGTGGCGGCGCACTACGGCGGCGCGA
CGACGACGGCGCTGTTCGCGCACCCGCGCGGCGGCGGggaggaggaggag
gtggaggaggaggaggaggaggaCGACGACGACgcggcgcagtcggtggt
ggcggcggtggcgcgcggcgcgggcgAGGTGGTGCTGGCCATCGGGCCGG
AGGGCGGGTGGAGCGACGACGAGGTGGCGCGCTTTCGGCGCGACGGCTTC
CGCCACGTGCGCTTTGGCGAGCGCGTGCTGCGCTCCGAGACGGCCGTGGT
GGTGGCCATGGCGCTGGTGCACGAGGGGCTGCGGTGGCGCCGCAGCCGGT
GGACGGTGCTCACTGATGGCGCCGATGCGCCTTGA
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Coding sequence (CDS) from alignment at tig00000069_pilon:595052..596086+

>Ggra5146.t1 ID=Ggra5146.t1|Name=Ggra5146.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1035bp|location=Sequence derived from alignment at tig00000069_pilon:595052..596086+ (Gracilaria gracilis GNS1m male)
ATGGGCCTGGGCGCTCTCAACCGCGTGCTGCTGACGGCGCGCGATCTGCA
GCGCGACGGCACGGCGTATCTGCGGAGCGACGACGCGCGCGCGCGGCACA
TCCGCGCGCTGCTGAGCGGCGGGCAGTCGCAATGTCGGCTGCGCGTGGCC
GTGGAGGACGGCTACCTGCACGACGACGCGCTGTGCGAGCTGCAGCGCGA
CGGCGGCTACACGCTGCGCATGTGCGAGCGCGGCCGACGCCAGCGCGATG
GCGCCGCGCGCGTGACGCTGCTGCTCGCCATGCAGCGACCCAAGGCGACG
GCGCGCATCCTGCGCGCCGTGGCTGGCGTGGGCGTAAGACGCGTGGTGCT
GGTGCATGCCGCCAAGACCGAGCGCACGTACTggcagagccggctgctgc
ggccggcgccggcgtgcgacgcggaggcgccgcagccgcagcggggcgAC
ACGCAgcagccacagccgcagccgcagccgcagccgcagccgcagccgca
gccgcagccgcagccgcagcagcagcagcagcagcagAGCGACGACGACG
ACGCAGACGTGCGCGACGTGAGTGAGGCGCCTCAGGTCCGACGGCTGTTG
ATCGAGGGCGTGCAGCAGGGCGCGCACGACGCGAGCGTACCGCAGGTAGT
AGTGGACCGGCGCGCGCTGCAGCAAGTGGCGGCGCACTACGGCGGCGCGA
CGACGACGGCGCTGTTCGCGCACCCGCGCGGCGGCGGggaggaggaggag
gtggaggaggaggaggaggaggaCGACGACGACgcggcgcagtcggtggt
ggcggcggtggcgcgcggcgcgggcgAGGTGGTGCTGGCCATCGGGCCGG
AGGGCGGGTGGAGCGACGACGAGGTGGCGCGCTTTCGGCGCGACGGCTTC
CGCCACGTGCGCTTTGGCGAGCGCGTGCTGCGCTCCGAGACGGCCGTGGT
GGTGGCCATGGCGCTGGTGCACGAGGGGCTGCGGTGGCGCCGCAGCCGGT
GGACGGTGCTCACTGATGGCGCCGATGCGCCTTGA
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