Ggra5115.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra5115.t1
Unique Name	Ggra5115.t1
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	233

Homology

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BLAST of Ggra5115.t1 vs. uniprot
Match: A0A2V3J6W1 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6W1_9FLOR)

HSP 1 Score: 288 bits (737), Expect = 8.050e-96
Identity = 144/205 (70.24%), Postives = 165/205 (80.49%), Query Frame = 0

Query:   22 KVKSIRDAFRRLEPGETPPKAPESLRTWCAQTTYGVIGGMLFGGYRGLQQARNKNIPSPVPTTSAQHRVAVFFVRDGILTGSRIGVFVSLFSATALLVGNSGLTKRVDHPANYAAAGAFTCGLFAAAVGGWVPAGPAAAFGAAISGAAATAQQSLEQLVAQSNGRLDIVQAQEPEASVGRVIRTLEENLASHPLRAASREDPVGS 226
            ++ SIRDAFRR+EPGETPP+APESLR WC+QTTYG++GGMLFGGYRGL QARNK+IPSPVPT S QHR AVFFVR+ ILTGSRIGVFVS+FSATAL +GNSG T  VDHP NYAAAGA TCGLFAAAVGGW PA PAA FGA  +GAAA A QSL+  VA S   +D+ Q ++ + SV RVI T E+NLA HPLR  +R   + S
Sbjct:   21 RISSIRDAFRRVEPGETPPEAPESLRIWCSQTTYGLLGGMLFGGYRGLLQARNKSIPSPVPTNSIQHRTAVFFVRESILTGSRIGVFVSVFSATALAIGNSGFTAGVDHPTNYAAAGALTCGLFAAAVGGWAPAAPAAVFGAGTAGAAAMANQSLQHAVASSLVSIDVPQVRDEDGSVARVIHTFEQNLAKHPLRTMNRSSSMES 225

[Close]

BLAST of Ggra5115.t1 vs. uniprot
Match: R7QG76 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QG76_CHOCR)

HSP 1 Score: 182 bits (461), Expect = 3.550e-54
Identity = 108/202 (53.47%), Postives = 130/202 (64.36%), Query Frame = 0

Query:   27 RDAFRRLEPGETPPKAPESLRTWCAQTTYGVIGGMLFGGYRGLQQARNKNIPSPVPTTSAQHRVAVFFVRDGILTGSRIGVFVSLFSATALLVGNS-GLTKRVDHPANYAAAGAFTCGLFAAAVGGWVPAGPAAAFGAAISGAAATAQQSLEQLV------AQSNGRLDIVQAQEPEASVGRVIRTLEENLASHPLRAASRE 221
            RDAF R+EPG   P  PESLRTW +QTTYG++GGM+FGGYRGL QAR    PSP PTTSA+HR+AVFFVR+ ILTG+R+G+F S+FSA +L    S G T     P  +AAAGA TCGLF +A  G V    AA FGA  +GA   AQ SLE         AQ    ++  Q  E + SV  VI  LEE+L +HP+  A RE
Sbjct:    4 RDAFTRVEPGSPRPAPPESLRTWTSQTTYGLLGGMVFGGYRGLLQARTST-PSPTPTTSARHRLAVFFVRESILTGARVGLFASVFSAVSLAAHASYGDTT----PGTFAAAGALTCGLFGSAAAGRVAVPAAAGFGAVAAGALGVAQASLEDAYQIKAGEAQGEDLVETAQEGEEQGSVAIVINRLEESLKAHPVAMARRE 200

The following BLAST results are available for this feature:

BLAST of Ggra5115.t1 vs. uniprot

BLAST of Ggra5115.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A2V3J6W1	8.050e-96	70.24	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]
R7QG76	3.550e-54	53.47	Uncharacterized protein n=1 Tax=Chondrus crispus T...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..38
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 211..232
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..41
None	No IPR available	TMHMM	TMhelix		coord: 134..156
None	No IPR available	TMHMM	TMhelix		coord: 105..124

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000069_pilon	contig	tig00000069_pilon:502462..503160 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra5115.t1	Ggra5115.t1	Gracilaria gracilis GNS1m male	mRNA	tig00000069_pilon 502462..503160 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra5115.t1 ID=Ggra5115.t1|Name=Ggra5115.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=233bp
MSSDRENVDISKNGPVKGHSEKVKSIRDAFRRLEPGETPPKAPESLRTWC
AQTTYGVIGGMLFGGYRGLQQARNKNIPSPVPTTSAQHRVAVFFVRDGIL
TGSRIGVFVSLFSATALLVGNSGLTKRVDHPANYAAAGAFTCGLFAAAVG
GWVPAGPAAAFGAAISGAAATAQQSLEQLVAQSNGRLDIVQAQEPEASVG
RVIRTLEENLASHPLRAASREDPVGSPDGPQT*